IMGT unique numbering for immunoglobulin and T cell receptor constant domains and Ig superfamily C-like domains
IMGT, the international ImMunoGeneTics information system ® ( http://imgt.cines.fr) provides a common access to expertly annotated data on the genome, proteome, genetics and structure of immunoglobulins (IG), T cell receptors (TR), major histocompatibility complex (MHC), and related proteins of the...
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| Veröffentlicht in: | Developmental and comparative immunology 2005, Vol.29 (3), p.185-203 |
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| creator | Lefranc, Marie-Paule Pommié, Christelle Kaas, Quentin Duprat, Elodie Bosc, Nathalie Guiraudou, Delphine Jean, Christelle Ruiz, Manuel Da Piédade, Isabelle Rouard, Mathieu Foulquier, Elodie Thouvenin, Valérie Lefranc, Gérard |
| description | IMGT, the international ImMunoGeneTics information system
® (
http://imgt.cines.fr) provides a common access to expertly annotated data on the genome, proteome, genetics and structure of immunoglobulins (IG), T cell receptors (TR), major histocompatibility complex (MHC), and related proteins of the immune system (RPI) of human and other vertebrates. The NUMEROTATION concept of IMGT-ONTOLOGY has allowed to define a unique numbering for the variable domains (V-DOMAINs) and for the V-LIKE-DOMAINs. In this paper, this standardized characterization is extended to the constant domains (C-DOMAINs), and to the C-LIKE-DOMAINs, leading, for the first time, to their standardized description of mutations, allelic polymorphisms, two-dimensional (2D) representations and tridimensional (3D) structures. The IMGT unique numbering is, therefore, highly valuable for the comparative, structural or evolutionary studies of the immunoglobulin superfamily (IgSF) domains, V-DOMAINs and C-DOMAINs of IG and TR in vertebrates, and V-LIKE-DOMAINs and C-LIKE-DOMAINs of proteins other than IG and TR, in any species. |
| doi_str_mv | 10.1016/j.dci.2004.07.003 |
| format | Article |
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® (
http://imgt.cines.fr) provides a common access to expertly annotated data on the genome, proteome, genetics and structure of immunoglobulins (IG), T cell receptors (TR), major histocompatibility complex (MHC), and related proteins of the immune system (RPI) of human and other vertebrates. The NUMEROTATION concept of IMGT-ONTOLOGY has allowed to define a unique numbering for the variable domains (V-DOMAINs) and for the V-LIKE-DOMAINs. In this paper, this standardized characterization is extended to the constant domains (C-DOMAINs), and to the C-LIKE-DOMAINs, leading, for the first time, to their standardized description of mutations, allelic polymorphisms, two-dimensional (2D) representations and tridimensional (3D) structures. The IMGT unique numbering is, therefore, highly valuable for the comparative, structural or evolutionary studies of the immunoglobulin superfamily (IgSF) domains, V-DOMAINs and C-DOMAINs of IG and TR in vertebrates, and V-LIKE-DOMAINs and C-LIKE-DOMAINs of proteins other than IG and TR, in any species.</description><identifier>ISSN: 0145-305X</identifier><identifier>EISSN: 1879-0089</identifier><identifier>DOI: 10.1016/j.dci.2004.07.003</identifier><identifier>PMID: 15572068</identifier><language>eng</language><publisher>United States: Elsevier Ltd</publisher><subject>Amino Acid Sequence ; C-set ; Colliers de Perles ; Constant domain ; Humans ; IMGT ; Immunoglobulin ; Immunoglobulin superfamily ; Immunoglobulins ; Internet ; Molecular Sequence Data ; Protein Structure, Secondary ; Protein Structure, Tertiary ; Receptors, Antigen, T-Cell ; Sequence Analysis, DNA ; Sequence Analysis, Protein ; T cell receptor ; Terminology as Topic ; V-set</subject><ispartof>Developmental and comparative immunology, 2005, Vol.29 (3), p.185-203</ispartof><rights>2004 Elsevier Ltd</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c349t-1de0e2e11790077699729341c7f630831f1e788f70a22607c123adce5b8af6c33</citedby><cites>FETCH-LOGICAL-c349t-1de0e2e11790077699729341c7f630831f1e788f70a22607c123adce5b8af6c33</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.dci.2004.07.003$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>315,781,785,3551,4025,27928,27929,27930,46000</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/15572068$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Lefranc, Marie-Paule</creatorcontrib><creatorcontrib>Pommié, Christelle</creatorcontrib><creatorcontrib>Kaas, Quentin</creatorcontrib><creatorcontrib>Duprat, Elodie</creatorcontrib><creatorcontrib>Bosc, Nathalie</creatorcontrib><creatorcontrib>Guiraudou, Delphine</creatorcontrib><creatorcontrib>Jean, Christelle</creatorcontrib><creatorcontrib>Ruiz, Manuel</creatorcontrib><creatorcontrib>Da Piédade, Isabelle</creatorcontrib><creatorcontrib>Rouard, Mathieu</creatorcontrib><creatorcontrib>Foulquier, Elodie</creatorcontrib><creatorcontrib>Thouvenin, Valérie</creatorcontrib><creatorcontrib>Lefranc, Gérard</creatorcontrib><title>IMGT unique numbering for immunoglobulin and T cell receptor constant domains and Ig superfamily C-like domains</title><title>Developmental and comparative immunology</title><addtitle>Dev Comp Immunol</addtitle><description>IMGT, the international ImMunoGeneTics information system
® (
http://imgt.cines.fr) provides a common access to expertly annotated data on the genome, proteome, genetics and structure of immunoglobulins (IG), T cell receptors (TR), major histocompatibility complex (MHC), and related proteins of the immune system (RPI) of human and other vertebrates. The NUMEROTATION concept of IMGT-ONTOLOGY has allowed to define a unique numbering for the variable domains (V-DOMAINs) and for the V-LIKE-DOMAINs. In this paper, this standardized characterization is extended to the constant domains (C-DOMAINs), and to the C-LIKE-DOMAINs, leading, for the first time, to their standardized description of mutations, allelic polymorphisms, two-dimensional (2D) representations and tridimensional (3D) structures. The IMGT unique numbering is, therefore, highly valuable for the comparative, structural or evolutionary studies of the immunoglobulin superfamily (IgSF) domains, V-DOMAINs and C-DOMAINs of IG and TR in vertebrates, and V-LIKE-DOMAINs and C-LIKE-DOMAINs of proteins other than IG and TR, in any species.</description><subject>Amino Acid Sequence</subject><subject>C-set</subject><subject>Colliers de Perles</subject><subject>Constant domain</subject><subject>Humans</subject><subject>IMGT</subject><subject>Immunoglobulin</subject><subject>Immunoglobulin superfamily</subject><subject>Immunoglobulins</subject><subject>Internet</subject><subject>Molecular Sequence Data</subject><subject>Protein Structure, Secondary</subject><subject>Protein Structure, Tertiary</subject><subject>Receptors, Antigen, T-Cell</subject><subject>Sequence Analysis, DNA</subject><subject>Sequence Analysis, Protein</subject><subject>T cell receptor</subject><subject>Terminology as Topic</subject><subject>V-set</subject><issn>0145-305X</issn><issn>1879-0089</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2005</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kD1PwzAQhi0EouXjB7AgT2wJ57iJEzGhio9KRSxFYrNc51K5JHaxE6T-e1xaxMYttzzvq7uHkCsGKQNW3K7TWps0A5ikIFIAfkTGrBRVAlBWx2QMbJInHPL3ETkLYQ1xSganZMTyXGRQlGPiZi9PCzpY8zkgtUO3RG_sijbOU9N1g3Wr1i2H1liqbE0XVGPbUo8aN31EtLOhV7anteuUseEHmq1oGDboG9WZdkunSWs-8Je4ICeNagNeHvY5eXt8WEyfk_nr02x6P080n1R9wmoEzJAxUQEIUVSVyCo-YVo0BYeSs4ahKMtGgMqyAoRmGVe1xnxZqqbQnJ-Tm33vxrv4WuhlZ8LueGXRDUEWgvOcV0UE2R7U3oXgsZEbbzrlt5KB3FmWaxkty51lCUJGyzFzfSgflh3Wf4mD1gjc7QGML34Z9DJog1ZjbaK7XtbO_FP_Dc6YjUE</recordid><startdate>2005</startdate><enddate>2005</enddate><creator>Lefranc, Marie-Paule</creator><creator>Pommié, Christelle</creator><creator>Kaas, Quentin</creator><creator>Duprat, Elodie</creator><creator>Bosc, Nathalie</creator><creator>Guiraudou, Delphine</creator><creator>Jean, Christelle</creator><creator>Ruiz, Manuel</creator><creator>Da Piédade, Isabelle</creator><creator>Rouard, Mathieu</creator><creator>Foulquier, Elodie</creator><creator>Thouvenin, Valérie</creator><creator>Lefranc, Gérard</creator><general>Elsevier Ltd</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>2005</creationdate><title>IMGT unique numbering for immunoglobulin and T cell receptor constant domains and Ig superfamily C-like domains</title><author>Lefranc, Marie-Paule ; Pommié, Christelle ; Kaas, Quentin ; Duprat, Elodie ; Bosc, Nathalie ; Guiraudou, Delphine ; Jean, Christelle ; Ruiz, Manuel ; Da Piédade, Isabelle ; Rouard, Mathieu ; Foulquier, Elodie ; Thouvenin, Valérie ; Lefranc, Gérard</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c349t-1de0e2e11790077699729341c7f630831f1e788f70a22607c123adce5b8af6c33</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2005</creationdate><topic>Amino Acid Sequence</topic><topic>C-set</topic><topic>Colliers de Perles</topic><topic>Constant domain</topic><topic>Humans</topic><topic>IMGT</topic><topic>Immunoglobulin</topic><topic>Immunoglobulin superfamily</topic><topic>Immunoglobulins</topic><topic>Internet</topic><topic>Molecular Sequence Data</topic><topic>Protein Structure, Secondary</topic><topic>Protein Structure, Tertiary</topic><topic>Receptors, Antigen, T-Cell</topic><topic>Sequence Analysis, DNA</topic><topic>Sequence Analysis, Protein</topic><topic>T cell receptor</topic><topic>Terminology as Topic</topic><topic>V-set</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Lefranc, Marie-Paule</creatorcontrib><creatorcontrib>Pommié, Christelle</creatorcontrib><creatorcontrib>Kaas, Quentin</creatorcontrib><creatorcontrib>Duprat, Elodie</creatorcontrib><creatorcontrib>Bosc, Nathalie</creatorcontrib><creatorcontrib>Guiraudou, Delphine</creatorcontrib><creatorcontrib>Jean, Christelle</creatorcontrib><creatorcontrib>Ruiz, Manuel</creatorcontrib><creatorcontrib>Da Piédade, Isabelle</creatorcontrib><creatorcontrib>Rouard, Mathieu</creatorcontrib><creatorcontrib>Foulquier, Elodie</creatorcontrib><creatorcontrib>Thouvenin, Valérie</creatorcontrib><creatorcontrib>Lefranc, Gérard</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Developmental and comparative immunology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Lefranc, Marie-Paule</au><au>Pommié, Christelle</au><au>Kaas, Quentin</au><au>Duprat, Elodie</au><au>Bosc, Nathalie</au><au>Guiraudou, Delphine</au><au>Jean, Christelle</au><au>Ruiz, Manuel</au><au>Da Piédade, Isabelle</au><au>Rouard, Mathieu</au><au>Foulquier, Elodie</au><au>Thouvenin, Valérie</au><au>Lefranc, Gérard</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>IMGT unique numbering for immunoglobulin and T cell receptor constant domains and Ig superfamily C-like domains</atitle><jtitle>Developmental and comparative immunology</jtitle><addtitle>Dev Comp Immunol</addtitle><date>2005</date><risdate>2005</risdate><volume>29</volume><issue>3</issue><spage>185</spage><epage>203</epage><pages>185-203</pages><issn>0145-305X</issn><eissn>1879-0089</eissn><abstract>IMGT, the international ImMunoGeneTics information system
® (
http://imgt.cines.fr) provides a common access to expertly annotated data on the genome, proteome, genetics and structure of immunoglobulins (IG), T cell receptors (TR), major histocompatibility complex (MHC), and related proteins of the immune system (RPI) of human and other vertebrates. The NUMEROTATION concept of IMGT-ONTOLOGY has allowed to define a unique numbering for the variable domains (V-DOMAINs) and for the V-LIKE-DOMAINs. In this paper, this standardized characterization is extended to the constant domains (C-DOMAINs), and to the C-LIKE-DOMAINs, leading, for the first time, to their standardized description of mutations, allelic polymorphisms, two-dimensional (2D) representations and tridimensional (3D) structures. The IMGT unique numbering is, therefore, highly valuable for the comparative, structural or evolutionary studies of the immunoglobulin superfamily (IgSF) domains, V-DOMAINs and C-DOMAINs of IG and TR in vertebrates, and V-LIKE-DOMAINs and C-LIKE-DOMAINs of proteins other than IG and TR, in any species.</abstract><cop>United States</cop><pub>Elsevier Ltd</pub><pmid>15572068</pmid><doi>10.1016/j.dci.2004.07.003</doi><tpages>19</tpages></addata></record> |
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| ispartof | Developmental and comparative immunology, 2005, Vol.29 (3), p.185-203 |
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| language | eng |
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| source | MEDLINE; Access via ScienceDirect (Elsevier) |
| subjects | Amino Acid Sequence C-set Colliers de Perles Constant domain Humans IMGT Immunoglobulin Immunoglobulin superfamily Immunoglobulins Internet Molecular Sequence Data Protein Structure, Secondary Protein Structure, Tertiary Receptors, Antigen, T-Cell Sequence Analysis, DNA Sequence Analysis, Protein T cell receptor Terminology as Topic V-set |
| title | IMGT unique numbering for immunoglobulin and T cell receptor constant domains and Ig superfamily C-like domains |
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