Chitiniphilus shinanonensis gen. nov., sp. nov., a novel chitin-degrading bacterium belonging to Betaproteobacteria
A bacterial strain capable of degrading chitin, strain SAY3T, was isolated from moat water of Ueda Castle in Nagano Prefecture, Japan. The strain was gram-negative, curved rod-shaped, facultatively anaerobic, and motile with a single polar flagellum. It grew well with chitin as a sole carbon source....
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| Veröffentlicht in: | Journal of general and applied microbiology 2009, Vol.55(2), pp.147-153 |
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| creator | Sato, Kazuaki Kato, Yuichi Taguchi, Goro Nogawa, Masahiro Yokota, Akira Shimosaka, Makoto |
| description | A bacterial strain capable of degrading chitin, strain SAY3T, was isolated from moat water of Ueda Castle in Nagano Prefecture, Japan. The strain was gram-negative, curved rod-shaped, facultatively anaerobic, and motile with a single polar flagellum. It grew well with chitin as a sole carbon source. The cellular fatty acids profiles showed the presence of C16:1 ω7c and C16:0 as the major components. The G+C content of DNA was 67.6 mol% and Q-8 was the major respiratory quinone. A 16S rRNA gene sequence-based phylogenetic analysis showed the strain belonged to the family Neisseriaceae but was distantly related (＜94% identity) to any previously known species. Since the strain was clearly distinct from closely related genera in phenotypic and chemotaxonomic characteristics, it should be classified under a new genus and a new species. We propose the name Chitiniphilus shinanonensis gen. nov., sp. nov. The type strain is SAY3T (=NBRC 104970T=NICMB 14509T). |
| doi_str_mv | 10.2323/jgam.55.147 |
| format | Article |
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The strain was gram-negative, curved rod-shaped, facultatively anaerobic, and motile with a single polar flagellum. It grew well with chitin as a sole carbon source. The cellular fatty acids profiles showed the presence of C16:1 ω7c and C16:0 as the major components. The G+C content of DNA was 67.6 mol% and Q-8 was the major respiratory quinone. A 16S rRNA gene sequence-based phylogenetic analysis showed the strain belonged to the family Neisseriaceae but was distantly related (＜94% identity) to any previously known species. Since the strain was clearly distinct from closely related genera in phenotypic and chemotaxonomic characteristics, it should be classified under a new genus and a new species. We propose the name Chitiniphilus shinanonensis gen. nov., sp. nov. The type strain is SAY3T (=NBRC 104970T=NICMB 14509T).</description><identifier>ISSN: 0022-1260</identifier><identifier>EISSN: 1349-8037</identifier><identifier>DOI: 10.2323/jgam.55.147</identifier><identifier>PMID: 19436131</identifier><identifier>CODEN: JGAMA9</identifier><language>eng</language><publisher>Tokyo: Applied Microbiology, Molecular and Cellular Biosciences Research Foundation</publisher><subject>16S rRNA gene sequence ; Bacteria ; Betaproteobacteria ; Biological and medical sciences ; Chemotaxis ; chitin ; Chitin - metabolism ; Chitiniphilus shinanonensis gen. nov., sp. nov ; chitinolytic bacterium ; Fundamental and applied biological sciences. Psychology ; Microbiology ; Microscopy, Electron, Transmission ; Molecular Sequence Data ; Neisseriaceae ; Neisseriaceae - classification ; Neisseriaceae - enzymology ; Neisseriaceae - genetics ; Neisseriaceae - metabolism ; Neisseriaceae - ultrastructure ; Phylogeny ; RNA, Ribosomal, 16S - genetics ; Water Microbiology</subject><ispartof>The Journal of General and Applied Microbiology, 2009, Vol.55(2), pp.147-153</ispartof><rights>2009 by The Applied Microbiology, Molecular and Cellular Biosciences Research Foundation</rights><rights>2009 INIST-CNRS</rights><rights>Copyright Japan Science and Technology Agency 2009</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c637t-7a56897f797e737624effa96ff37963077f75c9b4d865812b0502c0fe13f3b103</citedby><cites>FETCH-LOGICAL-c637t-7a56897f797e737624effa96ff37963077f75c9b4d865812b0502c0fe13f3b103</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,1877,4010,27900,27901,27902</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=21549901$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/19436131$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Sato, Kazuaki</creatorcontrib><creatorcontrib>Kato, Yuichi</creatorcontrib><creatorcontrib>Taguchi, Goro</creatorcontrib><creatorcontrib>Nogawa, Masahiro</creatorcontrib><creatorcontrib>Yokota, Akira</creatorcontrib><creatorcontrib>Shimosaka, Makoto</creatorcontrib><title>Chitiniphilus shinanonensis gen. nov., sp. nov., a novel chitin-degrading bacterium belonging to Betaproteobacteria</title><title>Journal of general and applied microbiology</title><addtitle>J. Gen. Appl. Microbiol.</addtitle><description>A bacterial strain capable of degrading chitin, strain SAY3T, was isolated from moat water of Ueda Castle in Nagano Prefecture, Japan. The strain was gram-negative, curved rod-shaped, facultatively anaerobic, and motile with a single polar flagellum. It grew well with chitin as a sole carbon source. The cellular fatty acids profiles showed the presence of C16:1 ω7c and C16:0 as the major components. The G+C content of DNA was 67.6 mol% and Q-8 was the major respiratory quinone. A 16S rRNA gene sequence-based phylogenetic analysis showed the strain belonged to the family Neisseriaceae but was distantly related (＜94% identity) to any previously known species. Since the strain was clearly distinct from closely related genera in phenotypic and chemotaxonomic characteristics, it should be classified under a new genus and a new species. We propose the name Chitiniphilus shinanonensis gen. nov., sp. nov. The type strain is SAY3T (=NBRC 104970T=NICMB 14509T).</description><subject>16S rRNA gene sequence</subject><subject>Bacteria</subject><subject>Betaproteobacteria</subject><subject>Biological and medical sciences</subject><subject>Chemotaxis</subject><subject>chitin</subject><subject>Chitin - metabolism</subject><subject>Chitiniphilus shinanonensis gen. nov., sp. nov</subject><subject>chitinolytic bacterium</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Microbiology</subject><subject>Microscopy, Electron, Transmission</subject><subject>Molecular Sequence Data</subject><subject>Neisseriaceae</subject><subject>Neisseriaceae - classification</subject><subject>Neisseriaceae - enzymology</subject><subject>Neisseriaceae - genetics</subject><subject>Neisseriaceae - metabolism</subject><subject>Neisseriaceae - ultrastructure</subject><subject>Phylogeny</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Water Microbiology</subject><issn>0022-1260</issn><issn>1349-8037</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2009</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqF0c2L1DAUAPAgiju7evIuBdGLtuY7zW11UHdhwYueS5p56WRo0zFJhf3vbXfqCF72khfyfu89wkPoFcEVZZR9PHRmqISoCFdP0IYwrssaM_UUbTCmtCRU4gt0mdIBYyZpzZ-jC6I5k4SRDUrbvc8--OPe91Mq0t4HE8YAIflUdBCqIoy_qw9FOv69mSVCX9iHwnIHXTQ7H7qiNTZD9NNQtNCPoVve8lh8hmyOccwwrsC8QM-c6RO8XOMV-vn1y4_tTXn3_dvt9tNdaSVTuVRGyForp7QCxZSkHJwzWjrHlJYMqzklrG75rpaiJrTFAlOLHRDmWEswu0LvTn3n8b8mSLkZfLLQ9ybAOKVGKspxreSjkGLFhaB6hm_-g4dximH-REO4xoIJTtSs3p-UjWNKEVxzjH4w8b4huFlW1iwra4SYixb9eu05tQPs_tl1RzN4uwKTrOldNMH6dHaUCK41Xtz1yR1SNh2cgYnZ2x7OQ-npmGefU3ZvYgOB_QHrAbVu</recordid><startdate>2009</startdate><enddate>2009</enddate><creator>Sato, Kazuaki</creator><creator>Kato, Yuichi</creator><creator>Taguchi, Goro</creator><creator>Nogawa, Masahiro</creator><creator>Yokota, Akira</creator><creator>Shimosaka, Makoto</creator><general>Applied Microbiology, Molecular and Cellular Biosciences Research Foundation</general><general>Microbiology Research Foundation</general><general>Japan Science and Technology Agency</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7T7</scope><scope>7U7</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>2009</creationdate><title>Chitiniphilus shinanonensis gen. nov., sp. nov., a novel chitin-degrading bacterium belonging to Betaproteobacteria</title><author>Sato, Kazuaki ; Kato, Yuichi ; Taguchi, Goro ; Nogawa, Masahiro ; Yokota, Akira ; Shimosaka, Makoto</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c637t-7a56897f797e737624effa96ff37963077f75c9b4d865812b0502c0fe13f3b103</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2009</creationdate><topic>16S rRNA gene sequence</topic><topic>Bacteria</topic><topic>Betaproteobacteria</topic><topic>Biological and medical sciences</topic><topic>Chemotaxis</topic><topic>chitin</topic><topic>Chitin - metabolism</topic><topic>Chitiniphilus shinanonensis gen. nov., sp. nov</topic><topic>chitinolytic bacterium</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Microbiology</topic><topic>Microscopy, Electron, Transmission</topic><topic>Molecular Sequence Data</topic><topic>Neisseriaceae</topic><topic>Neisseriaceae - classification</topic><topic>Neisseriaceae - enzymology</topic><topic>Neisseriaceae - genetics</topic><topic>Neisseriaceae - metabolism</topic><topic>Neisseriaceae - ultrastructure</topic><topic>Phylogeny</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Water Microbiology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Sato, Kazuaki</creatorcontrib><creatorcontrib>Kato, Yuichi</creatorcontrib><creatorcontrib>Taguchi, Goro</creatorcontrib><creatorcontrib>Nogawa, Masahiro</creatorcontrib><creatorcontrib>Yokota, Akira</creatorcontrib><creatorcontrib>Shimosaka, Makoto</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Toxicology Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Journal of general and applied microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Sato, Kazuaki</au><au>Kato, Yuichi</au><au>Taguchi, Goro</au><au>Nogawa, Masahiro</au><au>Yokota, Akira</au><au>Shimosaka, Makoto</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Chitiniphilus shinanonensis gen. nov., sp. nov., a novel chitin-degrading bacterium belonging to Betaproteobacteria</atitle><jtitle>Journal of general and applied microbiology</jtitle><addtitle>J. Gen. Appl. Microbiol.</addtitle><date>2009</date><risdate>2009</risdate><volume>55</volume><issue>2</issue><spage>147</spage><epage>153</epage><pages>147-153</pages><issn>0022-1260</issn><eissn>1349-8037</eissn><coden>JGAMA9</coden><abstract>A bacterial strain capable of degrading chitin, strain SAY3T, was isolated from moat water of Ueda Castle in Nagano Prefecture, Japan. The strain was gram-negative, curved rod-shaped, facultatively anaerobic, and motile with a single polar flagellum. It grew well with chitin as a sole carbon source. The cellular fatty acids profiles showed the presence of C16:1 ω7c and C16:0 as the major components. The G+C content of DNA was 67.6 mol% and Q-8 was the major respiratory quinone. A 16S rRNA gene sequence-based phylogenetic analysis showed the strain belonged to the family Neisseriaceae but was distantly related (＜94% identity) to any previously known species. Since the strain was clearly distinct from closely related genera in phenotypic and chemotaxonomic characteristics, it should be classified under a new genus and a new species. We propose the name Chitiniphilus shinanonensis gen. nov., sp. nov. The type strain is SAY3T (=NBRC 104970T=NICMB 14509T).</abstract><cop>Tokyo</cop><pub>Applied Microbiology, Molecular and Cellular Biosciences Research Foundation</pub><pmid>19436131</pmid><doi>10.2323/jgam.55.147</doi><tpages>7</tpages><oa>free_for_read</oa></addata></record> |
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| subjects | 16S rRNA gene sequence Bacteria Betaproteobacteria Biological and medical sciences Chemotaxis chitin Chitin - metabolism Chitiniphilus shinanonensis gen. nov., sp. nov chitinolytic bacterium Fundamental and applied biological sciences. Psychology Microbiology Microscopy, Electron, Transmission Molecular Sequence Data Neisseriaceae Neisseriaceae - classification Neisseriaceae - enzymology Neisseriaceae - genetics Neisseriaceae - metabolism Neisseriaceae - ultrastructure Phylogeny RNA, Ribosomal, 16S - genetics Water Microbiology |
| title | Chitiniphilus shinanonensis gen. nov., sp. nov., a novel chitin-degrading bacterium belonging to Betaproteobacteria |
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