Association of TRPV4 gene polymorphisms with chronic obstructive pulmonary disease
Chronic obstructive pulmonary disease (COPD) is characterized by airway epithelial damage, bronchoconstriction, parenchymal destruction and mucus hypersecretion. Upon activation by a broad range of stimuli, transient receptor potential vanilloid 4 (TRPV4) functions to control airway epithelial cell...
Gespeichert in:
Veröffentlicht in: | Human molecular genetics 2009-06, Vol.18 (11), p.2053-2062 |
---|---|
Hauptverfasser: | , , , , , , , |
Format: | Artikel |
Sprache: | eng |
Schlagworte: | |
Online-Zugang: | Volltext |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
container_end_page | 2062 |
---|---|
container_issue | 11 |
container_start_page | 2053 |
container_title | Human molecular genetics |
container_volume | 18 |
creator | Zhu, Guohua Gulsvik, Amund Bakke, Per Ghatta, Srinivas Anderson, Wayne Lomas, David A. Silverman, Edwin K. Pillai, Sreekumar G. |
description | Chronic obstructive pulmonary disease (COPD) is characterized by airway epithelial damage, bronchoconstriction, parenchymal destruction and mucus hypersecretion. Upon activation by a broad range of stimuli, transient receptor potential vanilloid 4 (TRPV4) functions to control airway epithelial cell volume and epithelial and endothelial permeability; it also triggers bronchial smooth muscle contraction and participates in autoregulation of mucociliary transport. These functions of TRPV4 may be important for the regulation of COPD pathogenesis, so TRPV4 is a candidate gene for COPD. We genotyped 20 single nucleotide polymorphisms (SNPs) in TRPV4, and tested qualitative COPD and quantitative FEV1 and FEV1/(F)VC phenotypes in two independent large populations. The family population had 606 pedigrees including 1891 individuals, and the case–control sample included 953 COPD cases and 956 controls. Family-based association tests were performed in the family data. Logistic regression and linear models were used in the case–control data to replicate the association results. In the family data, seven out of 20 SNPs tested were associated with COPD (2.5 × 10−4 ≤ P ≤ 0.04) and six SNPs were associated with FEV1/VC (0.02 ≤ P ≤ 0.03) from family-based association tests (PBAT) analysis. Four out of the seven SNPs associated with COPD demonstrated replicated associations with the same effect directions in the case–control population (0.02 ≤ P ≤ 0.03). Significant haplotype associations supported the results of single SNP analyses. Thus, polymorphisms in the TRPV4 gene are associated with COPD. |
doi_str_mv | 10.1093/hmg/ddp111 |
format | Article |
fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_67235054</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><oup_id>10.1093/hmg/ddp111</oup_id><sourcerecordid>21010777</sourcerecordid><originalsourceid>FETCH-LOGICAL-c477t-6c30fcf5498166616c69a88bc700b745d1e07d1ef05935735664a302b391de2b3</originalsourceid><addsrcrecordid>eNqF0U1v1DAQBmALgehSuPADUIQEh0qh4_hrfWwraJHKh1ZLhbhYjuN0XZI4eBJo_31d7aqVOMDFc3k045mXkJcU3lHQ7HDTXx42zUgpfUQWlEsoK1iyx2QBWvJSapB75BniFQCVnKmnZI_qSmkqYUFWR4jRBTuFOBSxLdarrxe8uPSDL8bY3fQxjZuAPRZ_wrQp3CbFIbgi1jil2U3hd2Zz18fBppuiCegt-ufkSWs79C92dZ98-_B-fXJWnn85_XhydF46rtRUSsegda3gekmllFQ6qe1yWTsFUCsuGupB5acFoZlQTEjJLYOqZpo2Ppd98nbbd0zx1-xxMn1A57vODj7OaKSqmADB_wsrChSUUhm-_gtexTkNeYlsaEXz8URGB1vkUkRMvjVjCn3e31Awd3mYnIfZ5pHxq13Hue5980B3AWTwZgcsOtu1yQ4u4L3LMysQVfXg4jz-e2C5dQEnf30vbfqZ75G_b86-_zArub4Qx58-m1N2C0H6rhk</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>211214375</pqid></control><display><type>article</type><title>Association of TRPV4 gene polymorphisms with chronic obstructive pulmonary disease</title><source>MEDLINE</source><source>Oxford University Press Journals All Titles (1996-Current)</source><source>EZB-FREE-00999 freely available EZB journals</source><source>Alma/SFX Local Collection</source><creator>Zhu, Guohua ; Gulsvik, Amund ; Bakke, Per ; Ghatta, Srinivas ; Anderson, Wayne ; Lomas, David A. ; Silverman, Edwin K. ; Pillai, Sreekumar G.</creator><creatorcontrib>Zhu, Guohua ; Gulsvik, Amund ; Bakke, Per ; Ghatta, Srinivas ; Anderson, Wayne ; Lomas, David A. ; Silverman, Edwin K. ; Pillai, Sreekumar G. ; ICGN Investigators ; ICGN Investigators</creatorcontrib><description>Chronic obstructive pulmonary disease (COPD) is characterized by airway epithelial damage, bronchoconstriction, parenchymal destruction and mucus hypersecretion. Upon activation by a broad range of stimuli, transient receptor potential vanilloid 4 (TRPV4) functions to control airway epithelial cell volume and epithelial and endothelial permeability; it also triggers bronchial smooth muscle contraction and participates in autoregulation of mucociliary transport. These functions of TRPV4 may be important for the regulation of COPD pathogenesis, so TRPV4 is a candidate gene for COPD. We genotyped 20 single nucleotide polymorphisms (SNPs) in TRPV4, and tested qualitative COPD and quantitative FEV1 and FEV1/(F)VC phenotypes in two independent large populations. The family population had 606 pedigrees including 1891 individuals, and the case–control sample included 953 COPD cases and 956 controls. Family-based association tests were performed in the family data. Logistic regression and linear models were used in the case–control data to replicate the association results. In the family data, seven out of 20 SNPs tested were associated with COPD (2.5 × 10−4 ≤ P ≤ 0.04) and six SNPs were associated with FEV1/VC (0.02 ≤ P ≤ 0.03) from family-based association tests (PBAT) analysis. Four out of the seven SNPs associated with COPD demonstrated replicated associations with the same effect directions in the case–control population (0.02 ≤ P ≤ 0.03). Significant haplotype associations supported the results of single SNP analyses. Thus, polymorphisms in the TRPV4 gene are associated with COPD.</description><identifier>ISSN: 0964-6906</identifier><identifier>EISSN: 1460-2083</identifier><identifier>DOI: 10.1093/hmg/ddp111</identifier><identifier>PMID: 19279160</identifier><identifier>CODEN: HNGEE5</identifier><language>eng</language><publisher>Oxford: Oxford University Press</publisher><subject>Adult ; Aged ; Biological and medical sciences ; Case-Control Studies ; Female ; Fundamental and applied biological sciences. Psychology ; Genetic Predisposition to Disease ; Genetics of eukaryotes. Biological and molecular evolution ; Genotype ; Humans ; Male ; Middle Aged ; Molecular and cellular biology ; Norway ; Pedigree ; Phenotype ; Polymorphism, Single Nucleotide ; Pulmonary Disease, Chronic Obstructive - genetics ; TRPV Cation Channels - genetics</subject><ispartof>Human molecular genetics, 2009-06, Vol.18 (11), p.2053-2062</ispartof><rights>The Author 2009. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org 2009</rights><rights>2009 INIST-CNRS</rights><rights>The Author 2009. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c477t-6c30fcf5498166616c69a88bc700b745d1e07d1ef05935735664a302b391de2b3</citedby><cites>FETCH-LOGICAL-c477t-6c30fcf5498166616c69a88bc700b745d1e07d1ef05935735664a302b391de2b3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>315,781,785,1585,27929,27930</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=21420522$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/19279160$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zhu, Guohua</creatorcontrib><creatorcontrib>Gulsvik, Amund</creatorcontrib><creatorcontrib>Bakke, Per</creatorcontrib><creatorcontrib>Ghatta, Srinivas</creatorcontrib><creatorcontrib>Anderson, Wayne</creatorcontrib><creatorcontrib>Lomas, David A.</creatorcontrib><creatorcontrib>Silverman, Edwin K.</creatorcontrib><creatorcontrib>Pillai, Sreekumar G.</creatorcontrib><creatorcontrib>ICGN Investigators</creatorcontrib><creatorcontrib>ICGN Investigators</creatorcontrib><title>Association of TRPV4 gene polymorphisms with chronic obstructive pulmonary disease</title><title>Human molecular genetics</title><addtitle>Hum Mol Genet</addtitle><description>Chronic obstructive pulmonary disease (COPD) is characterized by airway epithelial damage, bronchoconstriction, parenchymal destruction and mucus hypersecretion. Upon activation by a broad range of stimuli, transient receptor potential vanilloid 4 (TRPV4) functions to control airway epithelial cell volume and epithelial and endothelial permeability; it also triggers bronchial smooth muscle contraction and participates in autoregulation of mucociliary transport. These functions of TRPV4 may be important for the regulation of COPD pathogenesis, so TRPV4 is a candidate gene for COPD. We genotyped 20 single nucleotide polymorphisms (SNPs) in TRPV4, and tested qualitative COPD and quantitative FEV1 and FEV1/(F)VC phenotypes in two independent large populations. The family population had 606 pedigrees including 1891 individuals, and the case–control sample included 953 COPD cases and 956 controls. Family-based association tests were performed in the family data. Logistic regression and linear models were used in the case–control data to replicate the association results. In the family data, seven out of 20 SNPs tested were associated with COPD (2.5 × 10−4 ≤ P ≤ 0.04) and six SNPs were associated with FEV1/VC (0.02 ≤ P ≤ 0.03) from family-based association tests (PBAT) analysis. Four out of the seven SNPs associated with COPD demonstrated replicated associations with the same effect directions in the case–control population (0.02 ≤ P ≤ 0.03). Significant haplotype associations supported the results of single SNP analyses. Thus, polymorphisms in the TRPV4 gene are associated with COPD.</description><subject>Adult</subject><subject>Aged</subject><subject>Biological and medical sciences</subject><subject>Case-Control Studies</subject><subject>Female</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Genetic Predisposition to Disease</subject><subject>Genetics of eukaryotes. Biological and molecular evolution</subject><subject>Genotype</subject><subject>Humans</subject><subject>Male</subject><subject>Middle Aged</subject><subject>Molecular and cellular biology</subject><subject>Norway</subject><subject>Pedigree</subject><subject>Phenotype</subject><subject>Polymorphism, Single Nucleotide</subject><subject>Pulmonary Disease, Chronic Obstructive - genetics</subject><subject>TRPV Cation Channels - genetics</subject><issn>0964-6906</issn><issn>1460-2083</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2009</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqF0U1v1DAQBmALgehSuPADUIQEh0qh4_hrfWwraJHKh1ZLhbhYjuN0XZI4eBJo_31d7aqVOMDFc3k045mXkJcU3lHQ7HDTXx42zUgpfUQWlEsoK1iyx2QBWvJSapB75BniFQCVnKmnZI_qSmkqYUFWR4jRBTuFOBSxLdarrxe8uPSDL8bY3fQxjZuAPRZ_wrQp3CbFIbgi1jil2U3hd2Zz18fBppuiCegt-ufkSWs79C92dZ98-_B-fXJWnn85_XhydF46rtRUSsegda3gekmllFQ6qe1yWTsFUCsuGupB5acFoZlQTEjJLYOqZpo2Ppd98nbbd0zx1-xxMn1A57vODj7OaKSqmADB_wsrChSUUhm-_gtexTkNeYlsaEXz8URGB1vkUkRMvjVjCn3e31Awd3mYnIfZ5pHxq13Hue5980B3AWTwZgcsOtu1yQ4u4L3LMysQVfXg4jz-e2C5dQEnf30vbfqZ75G_b86-_zArub4Qx58-m1N2C0H6rhk</recordid><startdate>20090601</startdate><enddate>20090601</enddate><creator>Zhu, Guohua</creator><creator>Gulsvik, Amund</creator><creator>Bakke, Per</creator><creator>Ghatta, Srinivas</creator><creator>Anderson, Wayne</creator><creator>Lomas, David A.</creator><creator>Silverman, Edwin K.</creator><creator>Pillai, Sreekumar G.</creator><general>Oxford University Press</general><general>Oxford Publishing Limited (England)</general><scope>BSCLL</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QP</scope><scope>7TK</scope><scope>8FD</scope><scope>FR3</scope><scope>K9.</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20090601</creationdate><title>Association of TRPV4 gene polymorphisms with chronic obstructive pulmonary disease</title><author>Zhu, Guohua ; Gulsvik, Amund ; Bakke, Per ; Ghatta, Srinivas ; Anderson, Wayne ; Lomas, David A. ; Silverman, Edwin K. ; Pillai, Sreekumar G.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c477t-6c30fcf5498166616c69a88bc700b745d1e07d1ef05935735664a302b391de2b3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2009</creationdate><topic>Adult</topic><topic>Aged</topic><topic>Biological and medical sciences</topic><topic>Case-Control Studies</topic><topic>Female</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Genetic Predisposition to Disease</topic><topic>Genetics of eukaryotes. Biological and molecular evolution</topic><topic>Genotype</topic><topic>Humans</topic><topic>Male</topic><topic>Middle Aged</topic><topic>Molecular and cellular biology</topic><topic>Norway</topic><topic>Pedigree</topic><topic>Phenotype</topic><topic>Polymorphism, Single Nucleotide</topic><topic>Pulmonary Disease, Chronic Obstructive - genetics</topic><topic>TRPV Cation Channels - genetics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zhu, Guohua</creatorcontrib><creatorcontrib>Gulsvik, Amund</creatorcontrib><creatorcontrib>Bakke, Per</creatorcontrib><creatorcontrib>Ghatta, Srinivas</creatorcontrib><creatorcontrib>Anderson, Wayne</creatorcontrib><creatorcontrib>Lomas, David A.</creatorcontrib><creatorcontrib>Silverman, Edwin K.</creatorcontrib><creatorcontrib>Pillai, Sreekumar G.</creatorcontrib><creatorcontrib>ICGN Investigators</creatorcontrib><creatorcontrib>ICGN Investigators</creatorcontrib><collection>Istex</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Neurosciences Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Human molecular genetics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zhu, Guohua</au><au>Gulsvik, Amund</au><au>Bakke, Per</au><au>Ghatta, Srinivas</au><au>Anderson, Wayne</au><au>Lomas, David A.</au><au>Silverman, Edwin K.</au><au>Pillai, Sreekumar G.</au><aucorp>ICGN Investigators</aucorp><aucorp>ICGN Investigators</aucorp><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Association of TRPV4 gene polymorphisms with chronic obstructive pulmonary disease</atitle><jtitle>Human molecular genetics</jtitle><addtitle>Hum Mol Genet</addtitle><date>2009-06-01</date><risdate>2009</risdate><volume>18</volume><issue>11</issue><spage>2053</spage><epage>2062</epage><pages>2053-2062</pages><issn>0964-6906</issn><eissn>1460-2083</eissn><coden>HNGEE5</coden><abstract>Chronic obstructive pulmonary disease (COPD) is characterized by airway epithelial damage, bronchoconstriction, parenchymal destruction and mucus hypersecretion. Upon activation by a broad range of stimuli, transient receptor potential vanilloid 4 (TRPV4) functions to control airway epithelial cell volume and epithelial and endothelial permeability; it also triggers bronchial smooth muscle contraction and participates in autoregulation of mucociliary transport. These functions of TRPV4 may be important for the regulation of COPD pathogenesis, so TRPV4 is a candidate gene for COPD. We genotyped 20 single nucleotide polymorphisms (SNPs) in TRPV4, and tested qualitative COPD and quantitative FEV1 and FEV1/(F)VC phenotypes in two independent large populations. The family population had 606 pedigrees including 1891 individuals, and the case–control sample included 953 COPD cases and 956 controls. Family-based association tests were performed in the family data. Logistic regression and linear models were used in the case–control data to replicate the association results. In the family data, seven out of 20 SNPs tested were associated with COPD (2.5 × 10−4 ≤ P ≤ 0.04) and six SNPs were associated with FEV1/VC (0.02 ≤ P ≤ 0.03) from family-based association tests (PBAT) analysis. Four out of the seven SNPs associated with COPD demonstrated replicated associations with the same effect directions in the case–control population (0.02 ≤ P ≤ 0.03). Significant haplotype associations supported the results of single SNP analyses. Thus, polymorphisms in the TRPV4 gene are associated with COPD.</abstract><cop>Oxford</cop><pub>Oxford University Press</pub><pmid>19279160</pmid><doi>10.1093/hmg/ddp111</doi><tpages>10</tpages><oa>free_for_read</oa></addata></record> |
fulltext | fulltext |
identifier | ISSN: 0964-6906 |
ispartof | Human molecular genetics, 2009-06, Vol.18 (11), p.2053-2062 |
issn | 0964-6906 1460-2083 |
language | eng |
recordid | cdi_proquest_miscellaneous_67235054 |
source | MEDLINE; Oxford University Press Journals All Titles (1996-Current); EZB-FREE-00999 freely available EZB journals; Alma/SFX Local Collection |
subjects | Adult Aged Biological and medical sciences Case-Control Studies Female Fundamental and applied biological sciences. Psychology Genetic Predisposition to Disease Genetics of eukaryotes. Biological and molecular evolution Genotype Humans Male Middle Aged Molecular and cellular biology Norway Pedigree Phenotype Polymorphism, Single Nucleotide Pulmonary Disease, Chronic Obstructive - genetics TRPV Cation Channels - genetics |
title | Association of TRPV4 gene polymorphisms with chronic obstructive pulmonary disease |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-11T11%3A16%3A35IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Association%20of%20TRPV4%20gene%20polymorphisms%20with%20chronic%20obstructive%20pulmonary%20disease&rft.jtitle=Human%20molecular%20genetics&rft.au=Zhu,%20Guohua&rft.aucorp=ICGN%20Investigators&rft.date=2009-06-01&rft.volume=18&rft.issue=11&rft.spage=2053&rft.epage=2062&rft.pages=2053-2062&rft.issn=0964-6906&rft.eissn=1460-2083&rft.coden=HNGEE5&rft_id=info:doi/10.1093/hmg/ddp111&rft_dat=%3Cproquest_cross%3E21010777%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=211214375&rft_id=info:pmid/19279160&rft_oup_id=10.1093/hmg/ddp111&rfr_iscdi=true |