Mucilaginibacter daejeonensis sp. nov., isolated from dried rice straw
1 Department of Biological Sciences, Korea Advanced Institute of Science and Technology, 373-1, Guseong-dong, Yuseong-gu, Daejeon 305-701, Republic of Korea 2 Key Laboratory of Organism Functional Factors of the Changbai Mountain, Ministry of Education, Yanbian University, Yanji 133-002, PR China 3...
Gespeichert in:
| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2009-05, Vol.59 (5), p.1122-1125 |
|---|---|
| Hauptverfasser: | , , , |
| Format: | Artikel |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | 1125 |
|---|---|
| container_issue | 5 |
| container_start_page | 1122 |
| container_title | International journal of systematic and evolutionary microbiology |
| container_volume | 59 |
| creator | An, Dong-Shan Yin, Cheng-Ri Lee, Sung-Taik Cho, Chun-Hwi |
| description | 1 Department of Biological Sciences, Korea Advanced Institute of Science and Technology, 373-1, Guseong-dong, Yuseong-gu, Daejeon 305-701, Republic of Korea
2 Key Laboratory of Organism Functional Factors of the Changbai Mountain, Ministry of Education, Yanbian University, Yanji 133-002, PR China
3 Korea Agriculture Fertilizer Corporation Biochemistry Research Institute, ChungBuk 373-831, Republic of Korea
4 Department of Bio-Environmental Chemistry, Chungnam National University, Daejeon 305-764, Republic of Korea
Correspondence Chun-Hwi Cho kafco1002{at}hanmail.net
A novel strain, designated Jip 10 T , isolated from dried rice straw, was characterized by a polyphasic approach to clarify its taxonomic position. The isolate was Gram-negative, facultatively aerobic, heterotrophic, non-motile, non-spore-forming and rod-shaped. Phylogenetic analysis based on 16S rRNA gene sequences indicated that the isolate clustered with the genus Mucilaginibacter in the phylum Bacteroidetes . 16S rRNA gene sequence similarities between strain Jip 10 T and the type strains of Mucilaginibacter gracilis and Mucilaginibacter paludis were 93.7 and 93.6 %, respectively. The G+C content of the genomic DNA was 48.1 mol%. Chemotaxonomic data [major menaquinone MK-7 and major fatty acids iso-C 15 : 0 , iso-C 17 : 0 3-OH and summed feature 3 (iso-C 15 : 0 2-OH and/or C 16 : 1 7 c )] supported the affiliation of strain Jip 10 T to the genus Mucilaginibacter . However, the results of physiological and biochemical tests allowed phenotypic differentiation of strain Jip 10 T from other Mucilaginibacter species with validly published names. Therefore, strain Jip 10 T (=KCTC 12639 T =LMG 23488 T ) was classified in the genus Mucilaginibacter as the type strain of a novel species, for which the name Mucilaginibacter daejeonensis sp. nov. is proposed.
These authors contributed equally to this work.
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain Jip 10 T is AB267717 . |
| doi_str_mv | 10.1099/ijs.0.003384-0 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_67188647</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>20563316</sourcerecordid><originalsourceid>FETCH-LOGICAL-c427t-b39b764cfa78f42622758b4be620f86d9acbbb35a07fec2e8c10a313d6897a063</originalsourceid><addsrcrecordid>eNqFkMtLxDAQh4Movq8epRfFg62TR5P0KOILFC96Dkk6XbP0sSZdxf_eLrvo0dMMwze_GT5CTigUFKrqKsxTAQUA51rksEX2qZAyL4GL7d-eyT1ykNIcYBoA7JI9WgmQGsQ-uXte-tDaWeiDs37EmNUW5zj02KeQsrQosn74LC6zkIbWjlhnTRy6rI5hamPwmKUx2q8jstPYNuHxph6St7vb15uH_Onl_vHm-in3gqkxd7xySgrfWKUbwSRjqtROOJQMGi3rynrnHC8tqAY9Q-0pWE55LXWlLEh-SM7XuYs4fCwxjaYLyWPb2h6HZTJSUa2lUP-CDErJOV0lFmvQxyGliI1ZxNDZ-G0omJViMyk2YNaKDUwLp5vkpeuw_sM3TifgbAPY5G3bRNv7kH45RkWpSl5N3MWaew-z968Q0cyw78L0hwvD6mpZmdJQyhj_ARPYkbY</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>20563316</pqid></control><display><type>article</type><title>Mucilaginibacter daejeonensis sp. nov., isolated from dried rice straw</title><source>MEDLINE</source><source>Microbiology Society</source><source>EZB-FREE-00999 freely available EZB journals</source><source>Alma/SFX Local Collection</source><creator>An, Dong-Shan ; Yin, Cheng-Ri ; Lee, Sung-Taik ; Cho, Chun-Hwi</creator><creatorcontrib>An, Dong-Shan ; Yin, Cheng-Ri ; Lee, Sung-Taik ; Cho, Chun-Hwi</creatorcontrib><description>1 Department of Biological Sciences, Korea Advanced Institute of Science and Technology, 373-1, Guseong-dong, Yuseong-gu, Daejeon 305-701, Republic of Korea
2 Key Laboratory of Organism Functional Factors of the Changbai Mountain, Ministry of Education, Yanbian University, Yanji 133-002, PR China
3 Korea Agriculture Fertilizer Corporation Biochemistry Research Institute, ChungBuk 373-831, Republic of Korea
4 Department of Bio-Environmental Chemistry, Chungnam National University, Daejeon 305-764, Republic of Korea
Correspondence Chun-Hwi Cho kafco1002{at}hanmail.net
A novel strain, designated Jip 10 T , isolated from dried rice straw, was characterized by a polyphasic approach to clarify its taxonomic position. The isolate was Gram-negative, facultatively aerobic, heterotrophic, non-motile, non-spore-forming and rod-shaped. Phylogenetic analysis based on 16S rRNA gene sequences indicated that the isolate clustered with the genus Mucilaginibacter in the phylum Bacteroidetes . 16S rRNA gene sequence similarities between strain Jip 10 T and the type strains of Mucilaginibacter gracilis and Mucilaginibacter paludis were 93.7 and 93.6 %, respectively. The G+C content of the genomic DNA was 48.1 mol%. Chemotaxonomic data [major menaquinone MK-7 and major fatty acids iso-C 15 : 0 , iso-C 17 : 0 3-OH and summed feature 3 (iso-C 15 : 0 2-OH and/or C 16 : 1 7 c )] supported the affiliation of strain Jip 10 T to the genus Mucilaginibacter . However, the results of physiological and biochemical tests allowed phenotypic differentiation of strain Jip 10 T from other Mucilaginibacter species with validly published names. Therefore, strain Jip 10 T (=KCTC 12639 T =LMG 23488 T ) was classified in the genus Mucilaginibacter as the type strain of a novel species, for which the name Mucilaginibacter daejeonensis sp. nov. is proposed.
These authors contributed equally to this work.
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain Jip 10 T is AB267717 .</description><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijs.0.003384-0</identifier><identifier>PMID: 19406804</identifier><language>eng</language><publisher>Reading: Soc General Microbiol</publisher><subject>Bacterial Typing Techniques ; Bacteriology ; Bacteroidetes - classification ; Bacteroidetes - genetics ; Bacteroidetes - isolation & purification ; Bacteroidetes - physiology ; Base Composition ; Biological and medical sciences ; DNA, Bacterial - analysis ; DNA, Ribosomal - analysis ; Fatty Acids - analysis ; Fundamental and applied biological sciences. Psychology ; Genes, rRNA ; Korea ; Microbiology ; Molecular Sequence Data ; Oryza - microbiology ; Oryza sativa ; Phenotype ; Phylogeny ; RNA, Ribosomal, 16S - genetics ; Sequence Analysis, DNA ; Species Specificity ; Systematics</subject><ispartof>International journal of systematic and evolutionary microbiology, 2009-05, Vol.59 (5), p.1122-1125</ispartof><rights>2009 INIST-CNRS</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c427t-b39b764cfa78f42622758b4be620f86d9acbbb35a07fec2e8c10a313d6897a063</citedby><cites>FETCH-LOGICAL-c427t-b39b764cfa78f42622758b4be620f86d9acbbb35a07fec2e8c10a313d6897a063</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,3732,3733,27903,27904</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=21457539$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/19406804$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>An, Dong-Shan</creatorcontrib><creatorcontrib>Yin, Cheng-Ri</creatorcontrib><creatorcontrib>Lee, Sung-Taik</creatorcontrib><creatorcontrib>Cho, Chun-Hwi</creatorcontrib><title>Mucilaginibacter daejeonensis sp. nov., isolated from dried rice straw</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>1 Department of Biological Sciences, Korea Advanced Institute of Science and Technology, 373-1, Guseong-dong, Yuseong-gu, Daejeon 305-701, Republic of Korea
2 Key Laboratory of Organism Functional Factors of the Changbai Mountain, Ministry of Education, Yanbian University, Yanji 133-002, PR China
3 Korea Agriculture Fertilizer Corporation Biochemistry Research Institute, ChungBuk 373-831, Republic of Korea
4 Department of Bio-Environmental Chemistry, Chungnam National University, Daejeon 305-764, Republic of Korea
Correspondence Chun-Hwi Cho kafco1002{at}hanmail.net
A novel strain, designated Jip 10 T , isolated from dried rice straw, was characterized by a polyphasic approach to clarify its taxonomic position. The isolate was Gram-negative, facultatively aerobic, heterotrophic, non-motile, non-spore-forming and rod-shaped. Phylogenetic analysis based on 16S rRNA gene sequences indicated that the isolate clustered with the genus Mucilaginibacter in the phylum Bacteroidetes . 16S rRNA gene sequence similarities between strain Jip 10 T and the type strains of Mucilaginibacter gracilis and Mucilaginibacter paludis were 93.7 and 93.6 %, respectively. The G+C content of the genomic DNA was 48.1 mol%. Chemotaxonomic data [major menaquinone MK-7 and major fatty acids iso-C 15 : 0 , iso-C 17 : 0 3-OH and summed feature 3 (iso-C 15 : 0 2-OH and/or C 16 : 1 7 c )] supported the affiliation of strain Jip 10 T to the genus Mucilaginibacter . However, the results of physiological and biochemical tests allowed phenotypic differentiation of strain Jip 10 T from other Mucilaginibacter species with validly published names. Therefore, strain Jip 10 T (=KCTC 12639 T =LMG 23488 T ) was classified in the genus Mucilaginibacter as the type strain of a novel species, for which the name Mucilaginibacter daejeonensis sp. nov. is proposed.
These authors contributed equally to this work.
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain Jip 10 T is AB267717 .</description><subject>Bacterial Typing Techniques</subject><subject>Bacteriology</subject><subject>Bacteroidetes - classification</subject><subject>Bacteroidetes - genetics</subject><subject>Bacteroidetes - isolation & purification</subject><subject>Bacteroidetes - physiology</subject><subject>Base Composition</subject><subject>Biological and medical sciences</subject><subject>DNA, Bacterial - analysis</subject><subject>DNA, Ribosomal - analysis</subject><subject>Fatty Acids - analysis</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Genes, rRNA</subject><subject>Korea</subject><subject>Microbiology</subject><subject>Molecular Sequence Data</subject><subject>Oryza - microbiology</subject><subject>Oryza sativa</subject><subject>Phenotype</subject><subject>Phylogeny</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Sequence Analysis, DNA</subject><subject>Species Specificity</subject><subject>Systematics</subject><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2009</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkMtLxDAQh4Movq8epRfFg62TR5P0KOILFC96Dkk6XbP0sSZdxf_eLrvo0dMMwze_GT5CTigUFKrqKsxTAQUA51rksEX2qZAyL4GL7d-eyT1ykNIcYBoA7JI9WgmQGsQ-uXte-tDaWeiDs37EmNUW5zj02KeQsrQosn74LC6zkIbWjlhnTRy6rI5hamPwmKUx2q8jstPYNuHxph6St7vb15uH_Onl_vHm-in3gqkxd7xySgrfWKUbwSRjqtROOJQMGi3rynrnHC8tqAY9Q-0pWE55LXWlLEh-SM7XuYs4fCwxjaYLyWPb2h6HZTJSUa2lUP-CDErJOV0lFmvQxyGliI1ZxNDZ-G0omJViMyk2YNaKDUwLp5vkpeuw_sM3TifgbAPY5G3bRNv7kH45RkWpSl5N3MWaew-z968Q0cyw78L0hwvD6mpZmdJQyhj_ARPYkbY</recordid><startdate>20090501</startdate><enddate>20090501</enddate><creator>An, Dong-Shan</creator><creator>Yin, Cheng-Ri</creator><creator>Lee, Sung-Taik</creator><creator>Cho, Chun-Hwi</creator><general>Soc General Microbiol</general><general>Society for General Microbiology</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20090501</creationdate><title>Mucilaginibacter daejeonensis sp. nov., isolated from dried rice straw</title><author>An, Dong-Shan ; Yin, Cheng-Ri ; Lee, Sung-Taik ; Cho, Chun-Hwi</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c427t-b39b764cfa78f42622758b4be620f86d9acbbb35a07fec2e8c10a313d6897a063</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2009</creationdate><topic>Bacterial Typing Techniques</topic><topic>Bacteriology</topic><topic>Bacteroidetes - classification</topic><topic>Bacteroidetes - genetics</topic><topic>Bacteroidetes - isolation & purification</topic><topic>Bacteroidetes - physiology</topic><topic>Base Composition</topic><topic>Biological and medical sciences</topic><topic>DNA, Bacterial - analysis</topic><topic>DNA, Ribosomal - analysis</topic><topic>Fatty Acids - analysis</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Genes, rRNA</topic><topic>Korea</topic><topic>Microbiology</topic><topic>Molecular Sequence Data</topic><topic>Oryza - microbiology</topic><topic>Oryza sativa</topic><topic>Phenotype</topic><topic>Phylogeny</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Sequence Analysis, DNA</topic><topic>Species Specificity</topic><topic>Systematics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>An, Dong-Shan</creatorcontrib><creatorcontrib>Yin, Cheng-Ri</creatorcontrib><creatorcontrib>Lee, Sung-Taik</creatorcontrib><creatorcontrib>Cho, Chun-Hwi</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>An, Dong-Shan</au><au>Yin, Cheng-Ri</au><au>Lee, Sung-Taik</au><au>Cho, Chun-Hwi</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Mucilaginibacter daejeonensis sp. nov., isolated from dried rice straw</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2009-05-01</date><risdate>2009</risdate><volume>59</volume><issue>5</issue><spage>1122</spage><epage>1125</epage><pages>1122-1125</pages><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>1 Department of Biological Sciences, Korea Advanced Institute of Science and Technology, 373-1, Guseong-dong, Yuseong-gu, Daejeon 305-701, Republic of Korea
2 Key Laboratory of Organism Functional Factors of the Changbai Mountain, Ministry of Education, Yanbian University, Yanji 133-002, PR China
3 Korea Agriculture Fertilizer Corporation Biochemistry Research Institute, ChungBuk 373-831, Republic of Korea
4 Department of Bio-Environmental Chemistry, Chungnam National University, Daejeon 305-764, Republic of Korea
Correspondence Chun-Hwi Cho kafco1002{at}hanmail.net
A novel strain, designated Jip 10 T , isolated from dried rice straw, was characterized by a polyphasic approach to clarify its taxonomic position. The isolate was Gram-negative, facultatively aerobic, heterotrophic, non-motile, non-spore-forming and rod-shaped. Phylogenetic analysis based on 16S rRNA gene sequences indicated that the isolate clustered with the genus Mucilaginibacter in the phylum Bacteroidetes . 16S rRNA gene sequence similarities between strain Jip 10 T and the type strains of Mucilaginibacter gracilis and Mucilaginibacter paludis were 93.7 and 93.6 %, respectively. The G+C content of the genomic DNA was 48.1 mol%. Chemotaxonomic data [major menaquinone MK-7 and major fatty acids iso-C 15 : 0 , iso-C 17 : 0 3-OH and summed feature 3 (iso-C 15 : 0 2-OH and/or C 16 : 1 7 c )] supported the affiliation of strain Jip 10 T to the genus Mucilaginibacter . However, the results of physiological and biochemical tests allowed phenotypic differentiation of strain Jip 10 T from other Mucilaginibacter species with validly published names. Therefore, strain Jip 10 T (=KCTC 12639 T =LMG 23488 T ) was classified in the genus Mucilaginibacter as the type strain of a novel species, for which the name Mucilaginibacter daejeonensis sp. nov. is proposed.
These authors contributed equally to this work.
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain Jip 10 T is AB267717 .</abstract><cop>Reading</cop><pub>Soc General Microbiol</pub><pmid>19406804</pmid><doi>10.1099/ijs.0.003384-0</doi><tpages>4</tpages><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 1466-5026 |
| ispartof | International journal of systematic and evolutionary microbiology, 2009-05, Vol.59 (5), p.1122-1125 |
| issn | 1466-5026 1466-5034 |
| language | eng |
| recordid | cdi_proquest_miscellaneous_67188647 |
| source | MEDLINE; Microbiology Society; EZB-FREE-00999 freely available EZB journals; Alma/SFX Local Collection |
| subjects | Bacterial Typing Techniques Bacteriology Bacteroidetes - classification Bacteroidetes - genetics Bacteroidetes - isolation & purification Bacteroidetes - physiology Base Composition Biological and medical sciences DNA, Bacterial - analysis DNA, Ribosomal - analysis Fatty Acids - analysis Fundamental and applied biological sciences. Psychology Genes, rRNA Korea Microbiology Molecular Sequence Data Oryza - microbiology Oryza sativa Phenotype Phylogeny RNA, Ribosomal, 16S - genetics Sequence Analysis, DNA Species Specificity Systematics |
| title | Mucilaginibacter daejeonensis sp. nov., isolated from dried rice straw |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-23T00%3A14%3A57IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Mucilaginibacter%20daejeonensis%20sp.%20nov.,%20isolated%20from%20dried%20rice%20straw&rft.jtitle=International%20journal%20of%20systematic%20and%20evolutionary%20microbiology&rft.au=An,%20Dong-Shan&rft.date=2009-05-01&rft.volume=59&rft.issue=5&rft.spage=1122&rft.epage=1125&rft.pages=1122-1125&rft.issn=1466-5026&rft.eissn=1466-5034&rft_id=info:doi/10.1099/ijs.0.003384-0&rft_dat=%3Cproquest_cross%3E20563316%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=20563316&rft_id=info:pmid/19406804&rfr_iscdi=true |