Predicting anti-HIV activity of 2,3-diaryl-1,3-thiazolidin-4-ones: computational approach using reformed eccentric connectivity index
The eccentric connectivity index, which has recently been employed successfully for the development of numerous mathematical models for the prediction of biological activities of diverse nature, has been reformed to overcome its limitations caused by degeneracy and insensitivity towards heteroatoms....
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Veröffentlicht in: | Journal of molecular modeling 2004-12, Vol.10 (5-6), p.399-407 |
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creator | Kumar, Vipin Sardana, Satish Madan, Anil Kumar |
description | The eccentric connectivity index, which has recently been employed successfully for the development of numerous mathematical models for the prediction of biological activities of diverse nature, has been reformed to overcome its limitations caused by degeneracy and insensitivity towards heteroatoms. The reformed eccentric connectivity index, termed the eccentric connectivity topochemical index, overcomes the limitations of the eccentric connectivity index by exhibiting very low degeneracy and displaying sensitivity to both the presence and relative position of heteroatoms without compromizing the discriminating power of the eccentric connectivity index. The relationship of the eccentric connectivity topochemical index, eccentric connectivity index and Wiener's index with regard to the anti-HIV activity of 2, 3-diaryl-1, 3-thiazolidin-4-one derivatives was subsequently investigated. The values of the eccentric connectivity topochemical index, the eccentric connectivity index and Wiener's index of each of 31 analogues comprizing the data set were computed using in-house computer program. Resultant data was analyzed and suitable models developed after identification of active ranges. Subsequently, each derivative was assigned a biological activity using these models, which was then compared with the reported anti-HIV activity. The accuracy of prediction using these models was found to vary from 81 to 90%. The proposed index offers a vast potential for virtual screening of combinatorial libraries, structure property/activity studies and drug design. [figure]. Basic structure of 2,3-diaryl-1, 3-thiazoidin-4-ones. |
doi_str_mv | 10.1007/s00894-004-0215-8 |
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The reformed eccentric connectivity index, termed the eccentric connectivity topochemical index, overcomes the limitations of the eccentric connectivity index by exhibiting very low degeneracy and displaying sensitivity to both the presence and relative position of heteroatoms without compromizing the discriminating power of the eccentric connectivity index. The relationship of the eccentric connectivity topochemical index, eccentric connectivity index and Wiener's index with regard to the anti-HIV activity of 2, 3-diaryl-1, 3-thiazolidin-4-one derivatives was subsequently investigated. The values of the eccentric connectivity topochemical index, the eccentric connectivity index and Wiener's index of each of 31 analogues comprizing the data set were computed using in-house computer program. Resultant data was analyzed and suitable models developed after identification of active ranges. Subsequently, each derivative was assigned a biological activity using these models, which was then compared with the reported anti-HIV activity. The accuracy of prediction using these models was found to vary from 81 to 90%. The proposed index offers a vast potential for virtual screening of combinatorial libraries, structure property/activity studies and drug design. [figure]. Basic structure of 2,3-diaryl-1, 3-thiazoidin-4-ones.</description><identifier>ISSN: 1610-2940</identifier><identifier>EISSN: 0948-5023</identifier><identifier>DOI: 10.1007/s00894-004-0215-8</identifier><identifier>PMID: 15597209</identifier><language>eng</language><publisher>Germany</publisher><subject>Anti-HIV Agents - chemistry ; Anti-HIV Agents - pharmacology ; Computational Biology - methods ; Drug Design ; Models, Chemical ; Models, Molecular ; Nitrogen - chemistry ; Structure-Activity Relationship ; Thiazoles - chemistry ; Thiazoles - pharmacology</subject><ispartof>Journal of molecular modeling, 2004-12, Vol.10 (5-6), p.399-407</ispartof><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c299t-5fde5a9e99c80991574a65fb4066b080db4e0cac0e065d4ec0ae959332176a653</citedby><cites>FETCH-LOGICAL-c299t-5fde5a9e99c80991574a65fb4066b080db4e0cac0e065d4ec0ae959332176a653</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27922,27923</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/15597209$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Kumar, Vipin</creatorcontrib><creatorcontrib>Sardana, Satish</creatorcontrib><creatorcontrib>Madan, Anil Kumar</creatorcontrib><title>Predicting anti-HIV activity of 2,3-diaryl-1,3-thiazolidin-4-ones: computational approach using reformed eccentric connectivity index</title><title>Journal of molecular modeling</title><addtitle>J Mol Model</addtitle><description>The eccentric connectivity index, which has recently been employed successfully for the development of numerous mathematical models for the prediction of biological activities of diverse nature, has been reformed to overcome its limitations caused by degeneracy and insensitivity towards heteroatoms. The reformed eccentric connectivity index, termed the eccentric connectivity topochemical index, overcomes the limitations of the eccentric connectivity index by exhibiting very low degeneracy and displaying sensitivity to both the presence and relative position of heteroatoms without compromizing the discriminating power of the eccentric connectivity index. The relationship of the eccentric connectivity topochemical index, eccentric connectivity index and Wiener's index with regard to the anti-HIV activity of 2, 3-diaryl-1, 3-thiazolidin-4-one derivatives was subsequently investigated. The values of the eccentric connectivity topochemical index, the eccentric connectivity index and Wiener's index of each of 31 analogues comprizing the data set were computed using in-house computer program. Resultant data was analyzed and suitable models developed after identification of active ranges. Subsequently, each derivative was assigned a biological activity using these models, which was then compared with the reported anti-HIV activity. The accuracy of prediction using these models was found to vary from 81 to 90%. The proposed index offers a vast potential for virtual screening of combinatorial libraries, structure property/activity studies and drug design. [figure]. Basic structure of 2,3-diaryl-1, 3-thiazoidin-4-ones.</description><subject>Anti-HIV Agents - chemistry</subject><subject>Anti-HIV Agents - pharmacology</subject><subject>Computational Biology - methods</subject><subject>Drug Design</subject><subject>Models, Chemical</subject><subject>Models, Molecular</subject><subject>Nitrogen - chemistry</subject><subject>Structure-Activity Relationship</subject><subject>Thiazoles - chemistry</subject><subject>Thiazoles - pharmacology</subject><issn>1610-2940</issn><issn>0948-5023</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2004</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpFkE1PwzAMhiMEggn2A7ignjgRcNKkbbghxJeEBAfgGmWpC0FdMpoUMe78bzJtiINlW3r92n4IOWRwygDqswjQKEEBcnAmabNFJqBEQyXwcptMWMWAciVgj0xjfAcAxmUlOd8le0xKVXNQE_LzOGDrbHL-tTA-OXp791KY3H-6tCxCV_CTkrbODMueslymN2e-Q-9a56mgwWM8L2yYL8Zkkgve9IVZLIZg7FsxxpXpgF0Y5tgWaC36NDib9d7j3wrnW_w6IDud6SNON3mfPF9fPV3e0vuHm7vLi3tquVKJyq5FaRQqZRtQislamEp2MwFVNYMG2plAsMYCQiVbgRYMKqnKkrO6yspynxyvffOJHyPGpOcuWux74zGMUVc1q4WUZRaytdAOIcb8g14Mbp4paAZ6hV-v8euMX6_w6ybPHG3Mx1l--H9iA7v8BSjbgVg</recordid><startdate>200412</startdate><enddate>200412</enddate><creator>Kumar, Vipin</creator><creator>Sardana, Satish</creator><creator>Madan, Anil Kumar</creator><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>200412</creationdate><title>Predicting anti-HIV activity of 2,3-diaryl-1,3-thiazolidin-4-ones: computational approach using reformed eccentric connectivity index</title><author>Kumar, Vipin ; Sardana, Satish ; Madan, Anil Kumar</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c299t-5fde5a9e99c80991574a65fb4066b080db4e0cac0e065d4ec0ae959332176a653</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2004</creationdate><topic>Anti-HIV Agents - chemistry</topic><topic>Anti-HIV Agents - pharmacology</topic><topic>Computational Biology - methods</topic><topic>Drug Design</topic><topic>Models, Chemical</topic><topic>Models, Molecular</topic><topic>Nitrogen - chemistry</topic><topic>Structure-Activity Relationship</topic><topic>Thiazoles - chemistry</topic><topic>Thiazoles - pharmacology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Kumar, Vipin</creatorcontrib><creatorcontrib>Sardana, Satish</creatorcontrib><creatorcontrib>Madan, Anil Kumar</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Journal of molecular modeling</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Kumar, Vipin</au><au>Sardana, Satish</au><au>Madan, Anil Kumar</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Predicting anti-HIV activity of 2,3-diaryl-1,3-thiazolidin-4-ones: computational approach using reformed eccentric connectivity index</atitle><jtitle>Journal of molecular modeling</jtitle><addtitle>J Mol Model</addtitle><date>2004-12</date><risdate>2004</risdate><volume>10</volume><issue>5-6</issue><spage>399</spage><epage>407</epage><pages>399-407</pages><issn>1610-2940</issn><eissn>0948-5023</eissn><abstract>The eccentric connectivity index, which has recently been employed successfully for the development of numerous mathematical models for the prediction of biological activities of diverse nature, has been reformed to overcome its limitations caused by degeneracy and insensitivity towards heteroatoms. The reformed eccentric connectivity index, termed the eccentric connectivity topochemical index, overcomes the limitations of the eccentric connectivity index by exhibiting very low degeneracy and displaying sensitivity to both the presence and relative position of heteroatoms without compromizing the discriminating power of the eccentric connectivity index. The relationship of the eccentric connectivity topochemical index, eccentric connectivity index and Wiener's index with regard to the anti-HIV activity of 2, 3-diaryl-1, 3-thiazolidin-4-one derivatives was subsequently investigated. The values of the eccentric connectivity topochemical index, the eccentric connectivity index and Wiener's index of each of 31 analogues comprizing the data set were computed using in-house computer program. Resultant data was analyzed and suitable models developed after identification of active ranges. Subsequently, each derivative was assigned a biological activity using these models, which was then compared with the reported anti-HIV activity. The accuracy of prediction using these models was found to vary from 81 to 90%. The proposed index offers a vast potential for virtual screening of combinatorial libraries, structure property/activity studies and drug design. [figure]. Basic structure of 2,3-diaryl-1, 3-thiazoidin-4-ones.</abstract><cop>Germany</cop><pmid>15597209</pmid><doi>10.1007/s00894-004-0215-8</doi><tpages>9</tpages></addata></record> |
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subjects | Anti-HIV Agents - chemistry Anti-HIV Agents - pharmacology Computational Biology - methods Drug Design Models, Chemical Models, Molecular Nitrogen - chemistry Structure-Activity Relationship Thiazoles - chemistry Thiazoles - pharmacology |
title | Predicting anti-HIV activity of 2,3-diaryl-1,3-thiazolidin-4-ones: computational approach using reformed eccentric connectivity index |
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