Genome‐Wide Analysis of Genes Related to Kidney Stone Formation and Elimination in the Calcium Oxalate Nephrolithiasis Model Mouse: Detection of Stone‐Preventive Factors and Involvement of Macrophage Activity
We previously established a mouse kidney stone formation model and showed that mice have a higher tolerance to stone formation than rats. Furthermore, we showed that the generated calcium oxalate crystal deposits could be eliminated after several days. This study investigated the transcriptome of st...
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Veröffentlicht in: | Journal of bone and mineral research 2009-05, Vol.24 (5), p.908-924 |
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creator | Okada, Atsushi Yasui, Takahiro Hamamoto, Shuzo Hirose, Masahito Kubota, Yasue Itoh, Yasunori Tozawa, Keiichi Hayashi, Yutaro Kohri, Kenjiro |
description | We previously established a mouse kidney stone formation model and showed that mice have a higher tolerance to stone formation than rats. Furthermore, we showed that the generated calcium oxalate crystal deposits could be eliminated after several days. This study investigated the transcriptome of stone formation and elimination in the mouse kidney based on gene selection using a microarray technique. Eight‐week‐old male C57BL/6N mice were administered 80 mg/kg glyoxylate for 15 days, and kidney calcium oxalate crystal depositions had increased by day 6; thereafter, depositions decreased gradually and had almost disappeared by day 15. On microarray analysis, mRNA expression in the crystal‐formed kidneys showed the significant expression of 18,064 genes. Thirty‐one, 21, and 25 genes showed at least a 2‐fold increased expression during the experimental course (days 3–15), stone formation phase‐specific (days 3–6), and stone elimination phase‐specific (days 9–15) stages, respectively. Among these genes, those related to chemotaxis and monocyte/macrophage activation were identified. Gene ontology analysis to identify overexpressed genes highlighted categories related to inflammation, immune reactions and the complement activation pathway. Quantitative PCR of 17 previously reported stone‐related genes with a significant expression on microarray analysis showed significantly increased chemokines, stone matrix proteins, and their receptors; the significant decrease of several types of transporters and superoxide dismutase; and the persistently high expression of Tamm‐Horsfall protein throughout the experiment. In conclusion, inflammation and immune reactivity through macrophage migration are involved in stone formation and elimination in mouse kidneys. |
doi_str_mv | 10.1359/jbmr.081245 |
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Furthermore, we showed that the generated calcium oxalate crystal deposits could be eliminated after several days. This study investigated the transcriptome of stone formation and elimination in the mouse kidney based on gene selection using a microarray technique. Eight‐week‐old male C57BL/6N mice were administered 80 mg/kg glyoxylate for 15 days, and kidney calcium oxalate crystal depositions had increased by day 6; thereafter, depositions decreased gradually and had almost disappeared by day 15. On microarray analysis, mRNA expression in the crystal‐formed kidneys showed the significant expression of 18,064 genes. Thirty‐one, 21, and 25 genes showed at least a 2‐fold increased expression during the experimental course (days 3–15), stone formation phase‐specific (days 3–6), and stone elimination phase‐specific (days 9–15) stages, respectively. Among these genes, those related to chemotaxis and monocyte/macrophage activation were identified. Gene ontology analysis to identify overexpressed genes highlighted categories related to inflammation, immune reactions and the complement activation pathway. Quantitative PCR of 17 previously reported stone‐related genes with a significant expression on microarray analysis showed significantly increased chemokines, stone matrix proteins, and their receptors; the significant decrease of several types of transporters and superoxide dismutase; and the persistently high expression of Tamm‐Horsfall protein throughout the experiment. In conclusion, inflammation and immune reactivity through macrophage migration are involved in stone formation and elimination in mouse kidneys.</description><identifier>ISSN: 0884-0431</identifier><identifier>EISSN: 1523-4681</identifier><identifier>DOI: 10.1359/jbmr.081245</identifier><identifier>PMID: 19113933</identifier><identifier>CODEN: JBMREJ</identifier><language>eng</language><publisher>Washington, DC: John Wiley and Sons and The American Society for Bone and Mineral Research (ASBMR)</publisher><subject>Animals ; Biological and medical sciences ; calcium oxalate ; Calcium Oxalate - metabolism ; Disease Models, Animal ; Fundamental and applied biological sciences. Psychology ; Gene Expression Profiling ; Gene Expression Regulation ; Genome-Wide Association Study ; glyoxylate ; Immunohistochemistry ; Kidney Calculi - genetics ; kidney stone model mouse ; macrophage ; Macrophages - metabolism ; Mice ; Mice, Inbred C57BL ; microarray ; Oligonucleotide Array Sequence Analysis ; Skeleton and joints ; Vertebrates: osteoarticular system, musculoskeletal system</subject><ispartof>Journal of bone and mineral research, 2009-05, Vol.24 (5), p.908-924</ispartof><rights>Copyright © 2009 ASBMR</rights><rights>2009 INIST-CNRS</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4997-5759d8760805301894b5330a6c5030b57c04eaf7208ae0c5b1520c9c2da1cec03</citedby><cites>FETCH-LOGICAL-c4997-5759d8760805301894b5330a6c5030b57c04eaf7208ae0c5b1520c9c2da1cec03</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1359%2Fjbmr.081245$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1359%2Fjbmr.081245$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,780,784,1417,27924,27925,45574,45575</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=21416376$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/19113933$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Okada, Atsushi</creatorcontrib><creatorcontrib>Yasui, Takahiro</creatorcontrib><creatorcontrib>Hamamoto, Shuzo</creatorcontrib><creatorcontrib>Hirose, Masahito</creatorcontrib><creatorcontrib>Kubota, Yasue</creatorcontrib><creatorcontrib>Itoh, Yasunori</creatorcontrib><creatorcontrib>Tozawa, Keiichi</creatorcontrib><creatorcontrib>Hayashi, Yutaro</creatorcontrib><creatorcontrib>Kohri, Kenjiro</creatorcontrib><title>Genome‐Wide Analysis of Genes Related to Kidney Stone Formation and Elimination in the Calcium Oxalate Nephrolithiasis Model Mouse: Detection of Stone‐Preventive Factors and Involvement of Macrophage Activity</title><title>Journal of bone and mineral research</title><addtitle>J Bone Miner Res</addtitle><description>We previously established a mouse kidney stone formation model and showed that mice have a higher tolerance to stone formation than rats. Furthermore, we showed that the generated calcium oxalate crystal deposits could be eliminated after several days. This study investigated the transcriptome of stone formation and elimination in the mouse kidney based on gene selection using a microarray technique. Eight‐week‐old male C57BL/6N mice were administered 80 mg/kg glyoxylate for 15 days, and kidney calcium oxalate crystal depositions had increased by day 6; thereafter, depositions decreased gradually and had almost disappeared by day 15. On microarray analysis, mRNA expression in the crystal‐formed kidneys showed the significant expression of 18,064 genes. Thirty‐one, 21, and 25 genes showed at least a 2‐fold increased expression during the experimental course (days 3–15), stone formation phase‐specific (days 3–6), and stone elimination phase‐specific (days 9–15) stages, respectively. Among these genes, those related to chemotaxis and monocyte/macrophage activation were identified. Gene ontology analysis to identify overexpressed genes highlighted categories related to inflammation, immune reactions and the complement activation pathway. Quantitative PCR of 17 previously reported stone‐related genes with a significant expression on microarray analysis showed significantly increased chemokines, stone matrix proteins, and their receptors; the significant decrease of several types of transporters and superoxide dismutase; and the persistently high expression of Tamm‐Horsfall protein throughout the experiment. In conclusion, inflammation and immune reactivity through macrophage migration are involved in stone formation and elimination in mouse kidneys.</description><subject>Animals</subject><subject>Biological and medical sciences</subject><subject>calcium oxalate</subject><subject>Calcium Oxalate - metabolism</subject><subject>Disease Models, Animal</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Gene Expression Profiling</subject><subject>Gene Expression Regulation</subject><subject>Genome-Wide Association Study</subject><subject>glyoxylate</subject><subject>Immunohistochemistry</subject><subject>Kidney Calculi - genetics</subject><subject>kidney stone model mouse</subject><subject>macrophage</subject><subject>Macrophages - metabolism</subject><subject>Mice</subject><subject>Mice, Inbred C57BL</subject><subject>microarray</subject><subject>Oligonucleotide Array Sequence Analysis</subject><subject>Skeleton and joints</subject><subject>Vertebrates: osteoarticular system, musculoskeletal system</subject><issn>0884-0431</issn><issn>1523-4681</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2009</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkc9u1DAQxiMEotvCiTvyBS7VlnEc5w-3srSl0KWogDhGjjNhXTn2YnsXcuMReDiegCfB2azgBhdb1vz8fTPzJckjCieU8erZbdO7EyhpmvE7yYzylM2zvKR3kxmUZTaHjNGD5ND7WwDIeZ7fTw5oRSmrGJslPy_Q2B5_ff_xSbVITo3Qg1ee2I7ECnpyg1oEbEmw5I1qDQ7kfbAGybl1vQjKGiJMS8606pWZ3sqQsEKyEFqqTU-uv4lRgbzF9cpZrcJKidFhaVvU8dx4fE5eYkC5-x2Ndwaxo3cOt2iC2kY3IYN1fud1abZWb7GPpZFeCunseiU-x-6jxFaF4UFyrxPa48P9fZR8PD_7sHg1v7q-uFycXs1lVlXFnBe8assihxI4A1pWWcMZA5FLDgwaXkjIUHRFCqVAkLyJuwVZybQVVKIEdpQ8nXTXzn7ZoA91r7xErYXBOFedF5SP8v8FUyiyNCYYweMJjDN577Cr1071wg01hXpMux7Trqe0I_14L7tpemz_svt4I_BkDwgvhe6cMFL5P1xKM5qzIo9cMXFflcbhX5716xfLG55zSDPgtGC_AQ9zyGU</recordid><startdate>200905</startdate><enddate>200905</enddate><creator>Okada, Atsushi</creator><creator>Yasui, Takahiro</creator><creator>Hamamoto, Shuzo</creator><creator>Hirose, Masahito</creator><creator>Kubota, Yasue</creator><creator>Itoh, Yasunori</creator><creator>Tozawa, Keiichi</creator><creator>Hayashi, Yutaro</creator><creator>Kohri, Kenjiro</creator><general>John Wiley and Sons and The American Society for Bone and Mineral Research (ASBMR)</general><general>Wiley</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QP</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>200905</creationdate><title>Genome‐Wide Analysis of Genes Related to Kidney Stone Formation and Elimination in the Calcium Oxalate Nephrolithiasis Model Mouse: Detection of Stone‐Preventive Factors and Involvement of Macrophage Activity</title><author>Okada, Atsushi ; Yasui, Takahiro ; Hamamoto, Shuzo ; Hirose, Masahito ; Kubota, Yasue ; Itoh, Yasunori ; Tozawa, Keiichi ; Hayashi, Yutaro ; Kohri, Kenjiro</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4997-5759d8760805301894b5330a6c5030b57c04eaf7208ae0c5b1520c9c2da1cec03</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2009</creationdate><topic>Animals</topic><topic>Biological and medical sciences</topic><topic>calcium oxalate</topic><topic>Calcium Oxalate - metabolism</topic><topic>Disease Models, Animal</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Gene Expression Profiling</topic><topic>Gene Expression Regulation</topic><topic>Genome-Wide Association Study</topic><topic>glyoxylate</topic><topic>Immunohistochemistry</topic><topic>Kidney Calculi - genetics</topic><topic>kidney stone model mouse</topic><topic>macrophage</topic><topic>Macrophages - metabolism</topic><topic>Mice</topic><topic>Mice, Inbred C57BL</topic><topic>microarray</topic><topic>Oligonucleotide Array Sequence Analysis</topic><topic>Skeleton and joints</topic><topic>Vertebrates: osteoarticular system, musculoskeletal system</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Okada, Atsushi</creatorcontrib><creatorcontrib>Yasui, Takahiro</creatorcontrib><creatorcontrib>Hamamoto, Shuzo</creatorcontrib><creatorcontrib>Hirose, Masahito</creatorcontrib><creatorcontrib>Kubota, Yasue</creatorcontrib><creatorcontrib>Itoh, Yasunori</creatorcontrib><creatorcontrib>Tozawa, Keiichi</creatorcontrib><creatorcontrib>Hayashi, Yutaro</creatorcontrib><creatorcontrib>Kohri, Kenjiro</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Journal of bone and mineral research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Okada, Atsushi</au><au>Yasui, Takahiro</au><au>Hamamoto, Shuzo</au><au>Hirose, Masahito</au><au>Kubota, Yasue</au><au>Itoh, Yasunori</au><au>Tozawa, Keiichi</au><au>Hayashi, Yutaro</au><au>Kohri, Kenjiro</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genome‐Wide Analysis of Genes Related to Kidney Stone Formation and Elimination in the Calcium Oxalate Nephrolithiasis Model Mouse: Detection of Stone‐Preventive Factors and Involvement of Macrophage Activity</atitle><jtitle>Journal of bone and mineral research</jtitle><addtitle>J Bone Miner Res</addtitle><date>2009-05</date><risdate>2009</risdate><volume>24</volume><issue>5</issue><spage>908</spage><epage>924</epage><pages>908-924</pages><issn>0884-0431</issn><eissn>1523-4681</eissn><coden>JBMREJ</coden><abstract>We previously established a mouse kidney stone formation model and showed that mice have a higher tolerance to stone formation than rats. Furthermore, we showed that the generated calcium oxalate crystal deposits could be eliminated after several days. This study investigated the transcriptome of stone formation and elimination in the mouse kidney based on gene selection using a microarray technique. Eight‐week‐old male C57BL/6N mice were administered 80 mg/kg glyoxylate for 15 days, and kidney calcium oxalate crystal depositions had increased by day 6; thereafter, depositions decreased gradually and had almost disappeared by day 15. On microarray analysis, mRNA expression in the crystal‐formed kidneys showed the significant expression of 18,064 genes. Thirty‐one, 21, and 25 genes showed at least a 2‐fold increased expression during the experimental course (days 3–15), stone formation phase‐specific (days 3–6), and stone elimination phase‐specific (days 9–15) stages, respectively. Among these genes, those related to chemotaxis and monocyte/macrophage activation were identified. Gene ontology analysis to identify overexpressed genes highlighted categories related to inflammation, immune reactions and the complement activation pathway. Quantitative PCR of 17 previously reported stone‐related genes with a significant expression on microarray analysis showed significantly increased chemokines, stone matrix proteins, and their receptors; the significant decrease of several types of transporters and superoxide dismutase; and the persistently high expression of Tamm‐Horsfall protein throughout the experiment. In conclusion, inflammation and immune reactivity through macrophage migration are involved in stone formation and elimination in mouse kidneys.</abstract><cop>Washington, DC</cop><pub>John Wiley and Sons and The American Society for Bone and Mineral Research (ASBMR)</pub><pmid>19113933</pmid><doi>10.1359/jbmr.081245</doi><tpages>17</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Animals Biological and medical sciences calcium oxalate Calcium Oxalate - metabolism Disease Models, Animal Fundamental and applied biological sciences. Psychology Gene Expression Profiling Gene Expression Regulation Genome-Wide Association Study glyoxylate Immunohistochemistry Kidney Calculi - genetics kidney stone model mouse macrophage Macrophages - metabolism Mice Mice, Inbred C57BL microarray Oligonucleotide Array Sequence Analysis Skeleton and joints Vertebrates: osteoarticular system, musculoskeletal system |
title | Genome‐Wide Analysis of Genes Related to Kidney Stone Formation and Elimination in the Calcium Oxalate Nephrolithiasis Model Mouse: Detection of Stone‐Preventive Factors and Involvement of Macrophage Activity |
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