Collective Dynamics of Protein Hydration Water by Brillouin Neutron Spectroscopy
By a detailed experimental study of THz dynamics in the ribonuclease protein, we could detect the propagation of coherent collective density fluctuations within the protein hydration shell. The emerging picture indicates the presence of both a dispersing mode, traveling with a speed greater than 300...
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Veröffentlicht in: | Journal of the American Chemical Society 2009-04, Vol.131 (13), p.4664-4669 |
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creator | Orecchini, Andrea Paciaroni, Alessandro Francesco, Alessio De Petrillo, Caterina Sacchetti, Francesco |
description | By a detailed experimental study of THz dynamics in the ribonuclease protein, we could detect the propagation of coherent collective density fluctuations within the protein hydration shell. The emerging picture indicates the presence of both a dispersing mode, traveling with a speed greater than 3000 m/s, and a nondispersing one, characterized by an almost constant energy of 6−7 meV. In agreement with molecular dynamics simulations [Phys. Rev. Lett. 2002, 89, 275501], the features of the dispersion curves closely resemble those observed in pure liquid water [Phys. Rev. E: Stat. Phys., Plasmas, Fluids, Relat. Interdiscip. Top. 2004, 69, 061203]. On the contrary, the observed damping factors are much larger than in bulk water, with the dispersing mode becoming overdamped at Q = 0.6 Å−1 already. Such novel experimental findings are discussed as a dynamic signature of the disordering effect induced by the protein surface on the local structure of water. |
doi_str_mv | 10.1021/ja807957p |
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The emerging picture indicates the presence of both a dispersing mode, traveling with a speed greater than 3000 m/s, and a nondispersing one, characterized by an almost constant energy of 6−7 meV. In agreement with molecular dynamics simulations [Phys. Rev. Lett. 2002, 89, 275501], the features of the dispersion curves closely resemble those observed in pure liquid water [Phys. Rev. E: Stat. Phys., Plasmas, Fluids, Relat. Interdiscip. Top. 2004, 69, 061203]. On the contrary, the observed damping factors are much larger than in bulk water, with the dispersing mode becoming overdamped at Q = 0.6 Å−1 already. Such novel experimental findings are discussed as a dynamic signature of the disordering effect induced by the protein surface on the local structure of water.</description><identifier>ISSN: 0002-7863</identifier><identifier>EISSN: 1520-5126</identifier><identifier>DOI: 10.1021/ja807957p</identifier><identifier>PMID: 19284757</identifier><language>eng</language><publisher>United States: American Chemical Society</publisher><subject>Computer Simulation ; Models, Molecular ; Molecular Structure ; Neutrons ; Ribonuclease, Pancreatic - chemistry ; Spectrum Analysis - methods ; Water - chemistry</subject><ispartof>Journal of the American Chemical Society, 2009-04, Vol.131 (13), p.4664-4669</ispartof><rights>Copyright © 2009 American Chemical Society</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-a379t-5d8412bb16b077a95ccaf46e68281804bb75a0f4b150f4098462c1fe1a194f663</citedby><cites>FETCH-LOGICAL-a379t-5d8412bb16b077a95ccaf46e68281804bb75a0f4b150f4098462c1fe1a194f663</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://pubs.acs.org/doi/pdf/10.1021/ja807957p$$EPDF$$P50$$Gacs$$H</linktopdf><linktohtml>$$Uhttps://pubs.acs.org/doi/10.1021/ja807957p$$EHTML$$P50$$Gacs$$H</linktohtml><link.rule.ids>314,776,780,2752,27053,27901,27902,56713,56763</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/19284757$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Orecchini, Andrea</creatorcontrib><creatorcontrib>Paciaroni, Alessandro</creatorcontrib><creatorcontrib>Francesco, Alessio De</creatorcontrib><creatorcontrib>Petrillo, Caterina</creatorcontrib><creatorcontrib>Sacchetti, Francesco</creatorcontrib><title>Collective Dynamics of Protein Hydration Water by Brillouin Neutron Spectroscopy</title><title>Journal of the American Chemical Society</title><addtitle>J. Am. Chem. Soc</addtitle><description>By a detailed experimental study of THz dynamics in the ribonuclease protein, we could detect the propagation of coherent collective density fluctuations within the protein hydration shell. The emerging picture indicates the presence of both a dispersing mode, traveling with a speed greater than 3000 m/s, and a nondispersing one, characterized by an almost constant energy of 6−7 meV. In agreement with molecular dynamics simulations [Phys. Rev. Lett. 2002, 89, 275501], the features of the dispersion curves closely resemble those observed in pure liquid water [Phys. Rev. E: Stat. Phys., Plasmas, Fluids, Relat. Interdiscip. Top. 2004, 69, 061203]. On the contrary, the observed damping factors are much larger than in bulk water, with the dispersing mode becoming overdamped at Q = 0.6 Å−1 already. Such novel experimental findings are discussed as a dynamic signature of the disordering effect induced by the protein surface on the local structure of water.</description><subject>Computer Simulation</subject><subject>Models, Molecular</subject><subject>Molecular Structure</subject><subject>Neutrons</subject><subject>Ribonuclease, Pancreatic - chemistry</subject><subject>Spectrum Analysis - methods</subject><subject>Water - chemistry</subject><issn>0002-7863</issn><issn>1520-5126</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2009</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNptkE1LxDAQhoMo7rp68A9ILwoeqkk2Xz1q_Vhh0QUVjyHJJtClbWrSCv33RnbRi5cZhnnm5Z0XgFMErxDE6HqjBOQF5d0emCKKYU4RZvtgCiHEORdsPgFHMW7SSLBAh2CCCiwIp3wKVqWva2v66stmd2OrmsrEzLtsFXxvqzZbjOug-sq32Yfqbcj0mN2Gqq79kJbPduhDWr12SSH4aHw3HoMDp-poT3Z9Bt4f7t_KRb58eXwqb5a5mvOiz-laEIS1RkxDzlVBjVGOMMtEcigg0ZpTBR3RiKYKC0EYNshZpFBBHGPzGbjY6nbBfw429rKporF1rVrrhygZT0e8gAm83IImOYzBOtmFqlFhlAjKn_jkb3yJPduJDrqx6z9yl1cCzreAMlFu_BDa9OM_Qt_pXXZ7</recordid><startdate>20090408</startdate><enddate>20090408</enddate><creator>Orecchini, Andrea</creator><creator>Paciaroni, Alessandro</creator><creator>Francesco, Alessio De</creator><creator>Petrillo, Caterina</creator><creator>Sacchetti, Francesco</creator><general>American Chemical Society</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20090408</creationdate><title>Collective Dynamics of Protein Hydration Water by Brillouin Neutron Spectroscopy</title><author>Orecchini, Andrea ; Paciaroni, Alessandro ; Francesco, Alessio De ; Petrillo, Caterina ; Sacchetti, Francesco</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a379t-5d8412bb16b077a95ccaf46e68281804bb75a0f4b150f4098462c1fe1a194f663</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2009</creationdate><topic>Computer Simulation</topic><topic>Models, Molecular</topic><topic>Molecular Structure</topic><topic>Neutrons</topic><topic>Ribonuclease, Pancreatic - chemistry</topic><topic>Spectrum Analysis - methods</topic><topic>Water - chemistry</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Orecchini, Andrea</creatorcontrib><creatorcontrib>Paciaroni, Alessandro</creatorcontrib><creatorcontrib>Francesco, Alessio De</creatorcontrib><creatorcontrib>Petrillo, Caterina</creatorcontrib><creatorcontrib>Sacchetti, Francesco</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Journal of the American Chemical Society</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Orecchini, Andrea</au><au>Paciaroni, Alessandro</au><au>Francesco, Alessio De</au><au>Petrillo, Caterina</au><au>Sacchetti, Francesco</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Collective Dynamics of Protein Hydration Water by Brillouin Neutron Spectroscopy</atitle><jtitle>Journal of the American Chemical Society</jtitle><addtitle>J. Am. Chem. Soc</addtitle><date>2009-04-08</date><risdate>2009</risdate><volume>131</volume><issue>13</issue><spage>4664</spage><epage>4669</epage><pages>4664-4669</pages><issn>0002-7863</issn><eissn>1520-5126</eissn><abstract>By a detailed experimental study of THz dynamics in the ribonuclease protein, we could detect the propagation of coherent collective density fluctuations within the protein hydration shell. The emerging picture indicates the presence of both a dispersing mode, traveling with a speed greater than 3000 m/s, and a nondispersing one, characterized by an almost constant energy of 6−7 meV. In agreement with molecular dynamics simulations [Phys. Rev. Lett. 2002, 89, 275501], the features of the dispersion curves closely resemble those observed in pure liquid water [Phys. Rev. E: Stat. Phys., Plasmas, Fluids, Relat. Interdiscip. Top. 2004, 69, 061203]. On the contrary, the observed damping factors are much larger than in bulk water, with the dispersing mode becoming overdamped at Q = 0.6 Å−1 already. Such novel experimental findings are discussed as a dynamic signature of the disordering effect induced by the protein surface on the local structure of water.</abstract><cop>United States</cop><pub>American Chemical Society</pub><pmid>19284757</pmid><doi>10.1021/ja807957p</doi><tpages>6</tpages></addata></record> |
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subjects | Computer Simulation Models, Molecular Molecular Structure Neutrons Ribonuclease, Pancreatic - chemistry Spectrum Analysis - methods Water - chemistry |
title | Collective Dynamics of Protein Hydration Water by Brillouin Neutron Spectroscopy |
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