Four novel Arthrobacter species isolated from filtration substrate
1 Hirose Laboratory Environmental Microorganism, Honcho, Funabashi-City, Chiba Pref. 4-43-20, Japan 2 Laboratory of Bioresources, Institute of Molecular and Cellular Biosciences, The University of Tokyo, Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan Correspondence Linxian Ding dinglinxian{at}hotmail.com F...
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creator | Ding, Linxian Hirose, Taketo Yokota, Akira |
description | 1 Hirose Laboratory Environmental Microorganism, Honcho, Funabashi-City, Chiba Pref. 4-43-20, Japan
2 Laboratory of Bioresources, Institute of Molecular and Cellular Biosciences, The University of Tokyo, Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan
Correspondence Linxian Ding dinglinxian{at}hotmail.com
Four Gram-positive, non-motile, non-spore-forming bacterial strains, LC4 T , LC6 T , LC10 T and LC13 T , were isolated from a filtration substrate made from trass, a volcanic rock, and their taxonomic positions were investigated by a polyphasic taxonomic approach. The novel strains grew over a temperature range of 5–40 °C, at pH values of 6–11 and in the presence of 3–7 % (w/v) NaCl. A phylogenetic tree based on 16S rRNA gene sequences showed the novel strains formed a distinct evolutionary lineage within the genus Arthrobacter . Chemotaxonomic analyses demonstrated that the major menaquinone was MK-9(H 2 ), a menaquinone typical of the Arthrobacter globiformis group. The major fatty acid was anteiso-C 15 : 0 and the major amino acid present in the cell-wall peptidoglycan was L -lysine. These observations supported the affiliation of the novel strains to the genus Arthrobacter . On the basis of their morphological, physiological and genotypic characteristics, the new isolates are considered to represent four novel species of the genus Arthrobacter , for which the names Arthrobacter niigatensis sp. nov. (type strain LC4 T =IAM 15382 T =CCTCC AB 206012 T ), Arthrobacter alkaliphilus sp. nov. (type strain LC6 T =IAM 15383 T =CCTCC AB 206013 T ), Arthrobacter echigonensis sp. nov. (type strain LC10 T =IAM 15385 T =CCTCC AB 206017 T ) and Arthrobacter albidus sp. nov. (type strain LC13 T =IAM 15386 T =CCTCC AB 206018 T ) are proposed.
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequences of Arthrobacter niigatensis LC4 T , Arthrobacter alkaliphilus LC6 T , Arthrobacter echigonensis LC10 T and Arthrobacter albidus LC13 T reported in this paper are AB248526 , AB248527 , AB248531 and AB248533 , respectively. |
doi_str_mv | 10.1099/ijs.0.65301-0 |
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2 Laboratory of Bioresources, Institute of Molecular and Cellular Biosciences, The University of Tokyo, Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan
Correspondence Linxian Ding dinglinxian{at}hotmail.com
Four Gram-positive, non-motile, non-spore-forming bacterial strains, LC4 T , LC6 T , LC10 T and LC13 T , were isolated from a filtration substrate made from trass, a volcanic rock, and their taxonomic positions were investigated by a polyphasic taxonomic approach. The novel strains grew over a temperature range of 5–40 °C, at pH values of 6–11 and in the presence of 3–7 % (w/v) NaCl. A phylogenetic tree based on 16S rRNA gene sequences showed the novel strains formed a distinct evolutionary lineage within the genus Arthrobacter . Chemotaxonomic analyses demonstrated that the major menaquinone was MK-9(H 2 ), a menaquinone typical of the Arthrobacter globiformis group. The major fatty acid was anteiso-C 15 : 0 and the major amino acid present in the cell-wall peptidoglycan was L -lysine. These observations supported the affiliation of the novel strains to the genus Arthrobacter . On the basis of their morphological, physiological and genotypic characteristics, the new isolates are considered to represent four novel species of the genus Arthrobacter , for which the names Arthrobacter niigatensis sp. nov. (type strain LC4 T =IAM 15382 T =CCTCC AB 206012 T ), Arthrobacter alkaliphilus sp. nov. (type strain LC6 T =IAM 15383 T =CCTCC AB 206013 T ), Arthrobacter echigonensis sp. nov. (type strain LC10 T =IAM 15385 T =CCTCC AB 206017 T ) and Arthrobacter albidus sp. nov. (type strain LC13 T =IAM 15386 T =CCTCC AB 206018 T ) are proposed.
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequences of Arthrobacter niigatensis LC4 T , Arthrobacter alkaliphilus LC6 T , Arthrobacter echigonensis LC10 T and Arthrobacter albidus LC13 T reported in this paper are AB248526 , AB248527 , AB248531 and AB248533 , respectively.</description><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijs.0.65301-0</identifier><identifier>PMID: 19329620</identifier><language>eng</language><publisher>Reading: Soc General Microbiol</publisher><subject>Amino Acids - analysis ; Arthrobacter ; Arthrobacter - classification ; Arthrobacter - genetics ; Arthrobacter - isolation & purification ; Arthrobacter - physiology ; Arthrobacter globiformis ; Bacterial Typing Techniques ; Bacteriology ; Biological and medical sciences ; Cluster Analysis ; DNA, Bacterial - chemistry ; DNA, Bacterial - genetics ; DNA, Ribosomal - chemistry ; DNA, Ribosomal - genetics ; Fatty Acids - analysis ; Fundamental and applied biological sciences. Psychology ; Hydrogen-Ion Concentration ; Microbiology ; Miscellaneous ; Molecular Sequence Data ; Phylogeny ; RNA, Ribosomal, 16S - genetics ; Sequence Analysis, DNA ; Sequence Homology, Nucleic Acid ; Sodium Chloride - metabolism ; Soil Microbiology ; Systematics ; Temperature ; Vitamin K 2 - analysis</subject><ispartof>International journal of systematic and evolutionary microbiology, 2009-04, Vol.59 (4), p.856-862</ispartof><rights>2009 INIST-CNRS</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c423t-c2bb88a84008de66358e383fde351426b86260cd94f1f545e103df2e5cc86eeb3</citedby><cites>FETCH-LOGICAL-c423t-c2bb88a84008de66358e383fde351426b86260cd94f1f545e103df2e5cc86eeb3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,3732,3733,27903,27904</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=21359173$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/19329620$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Ding, Linxian</creatorcontrib><creatorcontrib>Hirose, Taketo</creatorcontrib><creatorcontrib>Yokota, Akira</creatorcontrib><title>Four novel Arthrobacter species isolated from filtration substrate</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>1 Hirose Laboratory Environmental Microorganism, Honcho, Funabashi-City, Chiba Pref. 4-43-20, Japan
2 Laboratory of Bioresources, Institute of Molecular and Cellular Biosciences, The University of Tokyo, Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan
Correspondence Linxian Ding dinglinxian{at}hotmail.com
Four Gram-positive, non-motile, non-spore-forming bacterial strains, LC4 T , LC6 T , LC10 T and LC13 T , were isolated from a filtration substrate made from trass, a volcanic rock, and their taxonomic positions were investigated by a polyphasic taxonomic approach. The novel strains grew over a temperature range of 5–40 °C, at pH values of 6–11 and in the presence of 3–7 % (w/v) NaCl. A phylogenetic tree based on 16S rRNA gene sequences showed the novel strains formed a distinct evolutionary lineage within the genus Arthrobacter . Chemotaxonomic analyses demonstrated that the major menaquinone was MK-9(H 2 ), a menaquinone typical of the Arthrobacter globiformis group. The major fatty acid was anteiso-C 15 : 0 and the major amino acid present in the cell-wall peptidoglycan was L -lysine. These observations supported the affiliation of the novel strains to the genus Arthrobacter . On the basis of their morphological, physiological and genotypic characteristics, the new isolates are considered to represent four novel species of the genus Arthrobacter , for which the names Arthrobacter niigatensis sp. nov. (type strain LC4 T =IAM 15382 T =CCTCC AB 206012 T ), Arthrobacter alkaliphilus sp. nov. (type strain LC6 T =IAM 15383 T =CCTCC AB 206013 T ), Arthrobacter echigonensis sp. nov. (type strain LC10 T =IAM 15385 T =CCTCC AB 206017 T ) and Arthrobacter albidus sp. nov. (type strain LC13 T =IAM 15386 T =CCTCC AB 206018 T ) are proposed.
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequences of Arthrobacter niigatensis LC4 T , Arthrobacter alkaliphilus LC6 T , Arthrobacter echigonensis LC10 T and Arthrobacter albidus LC13 T reported in this paper are AB248526 , AB248527 , AB248531 and AB248533 , respectively.</description><subject>Amino Acids - analysis</subject><subject>Arthrobacter</subject><subject>Arthrobacter - classification</subject><subject>Arthrobacter - genetics</subject><subject>Arthrobacter - isolation & purification</subject><subject>Arthrobacter - physiology</subject><subject>Arthrobacter globiformis</subject><subject>Bacterial Typing Techniques</subject><subject>Bacteriology</subject><subject>Biological and medical sciences</subject><subject>Cluster Analysis</subject><subject>DNA, Bacterial - chemistry</subject><subject>DNA, Bacterial - genetics</subject><subject>DNA, Ribosomal - chemistry</subject><subject>DNA, Ribosomal - genetics</subject><subject>Fatty Acids - analysis</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Hydrogen-Ion Concentration</subject><subject>Microbiology</subject><subject>Miscellaneous</subject><subject>Molecular Sequence Data</subject><subject>Phylogeny</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Sequence Analysis, DNA</subject><subject>Sequence Homology, Nucleic Acid</subject><subject>Sodium Chloride - metabolism</subject><subject>Soil Microbiology</subject><subject>Systematics</subject><subject>Temperature</subject><subject>Vitamin K 2 - analysis</subject><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2009</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqF0EtP3DAUBWCroiqPdskWZQOsMlw_x14C4lEJqZuythznmjFK4qmdgPj3ZJgRXbLylfXp2PcQckxhQcGYi_hcFrBQkgOt4Rs5oEKpWgIXe58zU_vksJRngPkC4AfZp4YzoxgckKvbNOVqSC_YVZd5XOXUOD9irsoafcRSxZI6N2JbhZz6KsRuzG6MaajK1JTNjD_J9-C6gr925xF5vL35e31fP_y5-319-VB7wfhYe9Y0WjstAHSLSnGpkWseWuSSCqYarZgC3xoRaJBCIgXeBobSe60QG35Ezra565z-TVhG28fisevcgGkqVi1BL828-leQgTBKGDPDegt9TqVkDHadY-_ym6VgN-3auV0L9qNduwk-2QVPTY_tf72rcwanO-CKd13IbvCxfDpGuTR0yWd3vnWr-LR6jRntEw59nL_RxLR5VBorrJaKvwMbR5CD</recordid><startdate>20090401</startdate><enddate>20090401</enddate><creator>Ding, Linxian</creator><creator>Hirose, Taketo</creator><creator>Yokota, Akira</creator><general>Soc General Microbiol</general><general>Society for General Microbiology</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7T7</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>P64</scope><scope>7X8</scope></search><sort><creationdate>20090401</creationdate><title>Four novel Arthrobacter species isolated from filtration substrate</title><author>Ding, Linxian ; Hirose, Taketo ; Yokota, Akira</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c423t-c2bb88a84008de66358e383fde351426b86260cd94f1f545e103df2e5cc86eeb3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2009</creationdate><topic>Amino Acids - analysis</topic><topic>Arthrobacter</topic><topic>Arthrobacter - classification</topic><topic>Arthrobacter - genetics</topic><topic>Arthrobacter - isolation & purification</topic><topic>Arthrobacter - physiology</topic><topic>Arthrobacter globiformis</topic><topic>Bacterial Typing Techniques</topic><topic>Bacteriology</topic><topic>Biological and medical sciences</topic><topic>Cluster Analysis</topic><topic>DNA, Bacterial - chemistry</topic><topic>DNA, Bacterial - genetics</topic><topic>DNA, Ribosomal - chemistry</topic><topic>DNA, Ribosomal - genetics</topic><topic>Fatty Acids - analysis</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Hydrogen-Ion Concentration</topic><topic>Microbiology</topic><topic>Miscellaneous</topic><topic>Molecular Sequence Data</topic><topic>Phylogeny</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Sequence Analysis, DNA</topic><topic>Sequence Homology, Nucleic Acid</topic><topic>Sodium Chloride - metabolism</topic><topic>Soil Microbiology</topic><topic>Systematics</topic><topic>Temperature</topic><topic>Vitamin K 2 - analysis</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ding, Linxian</creatorcontrib><creatorcontrib>Hirose, Taketo</creatorcontrib><creatorcontrib>Yokota, Akira</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Ding, Linxian</au><au>Hirose, Taketo</au><au>Yokota, Akira</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Four novel Arthrobacter species isolated from filtration substrate</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2009-04-01</date><risdate>2009</risdate><volume>59</volume><issue>4</issue><spage>856</spage><epage>862</epage><pages>856-862</pages><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>1 Hirose Laboratory Environmental Microorganism, Honcho, Funabashi-City, Chiba Pref. 4-43-20, Japan
2 Laboratory of Bioresources, Institute of Molecular and Cellular Biosciences, The University of Tokyo, Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan
Correspondence Linxian Ding dinglinxian{at}hotmail.com
Four Gram-positive, non-motile, non-spore-forming bacterial strains, LC4 T , LC6 T , LC10 T and LC13 T , were isolated from a filtration substrate made from trass, a volcanic rock, and their taxonomic positions were investigated by a polyphasic taxonomic approach. The novel strains grew over a temperature range of 5–40 °C, at pH values of 6–11 and in the presence of 3–7 % (w/v) NaCl. A phylogenetic tree based on 16S rRNA gene sequences showed the novel strains formed a distinct evolutionary lineage within the genus Arthrobacter . Chemotaxonomic analyses demonstrated that the major menaquinone was MK-9(H 2 ), a menaquinone typical of the Arthrobacter globiformis group. The major fatty acid was anteiso-C 15 : 0 and the major amino acid present in the cell-wall peptidoglycan was L -lysine. These observations supported the affiliation of the novel strains to the genus Arthrobacter . On the basis of their morphological, physiological and genotypic characteristics, the new isolates are considered to represent four novel species of the genus Arthrobacter , for which the names Arthrobacter niigatensis sp. nov. (type strain LC4 T =IAM 15382 T =CCTCC AB 206012 T ), Arthrobacter alkaliphilus sp. nov. (type strain LC6 T =IAM 15383 T =CCTCC AB 206013 T ), Arthrobacter echigonensis sp. nov. (type strain LC10 T =IAM 15385 T =CCTCC AB 206017 T ) and Arthrobacter albidus sp. nov. (type strain LC13 T =IAM 15386 T =CCTCC AB 206018 T ) are proposed.
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequences of Arthrobacter niigatensis LC4 T , Arthrobacter alkaliphilus LC6 T , Arthrobacter echigonensis LC10 T and Arthrobacter albidus LC13 T reported in this paper are AB248526 , AB248527 , AB248531 and AB248533 , respectively.</abstract><cop>Reading</cop><pub>Soc General Microbiol</pub><pmid>19329620</pmid><doi>10.1099/ijs.0.65301-0</doi><tpages>7</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Amino Acids - analysis Arthrobacter Arthrobacter - classification Arthrobacter - genetics Arthrobacter - isolation & purification Arthrobacter - physiology Arthrobacter globiformis Bacterial Typing Techniques Bacteriology Biological and medical sciences Cluster Analysis DNA, Bacterial - chemistry DNA, Bacterial - genetics DNA, Ribosomal - chemistry DNA, Ribosomal - genetics Fatty Acids - analysis Fundamental and applied biological sciences. Psychology Hydrogen-Ion Concentration Microbiology Miscellaneous Molecular Sequence Data Phylogeny RNA, Ribosomal, 16S - genetics Sequence Analysis, DNA Sequence Homology, Nucleic Acid Sodium Chloride - metabolism Soil Microbiology Systematics Temperature Vitamin K 2 - analysis |
title | Four novel Arthrobacter species isolated from filtration substrate |
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