Reclassification of Mesoplasma pleciae as Acholeplasma pleciae comb. nov. on the basis of 16S rRNA and gyrB gene sequence data
MIT Computer Science and Artificial Intelligence Laboratory, 32 Vassar Street, Cambridge, MA 02139, USA Correspondence Thomas F. Knight Jr tk{at}mit.edu Genomic DNA sequence data for the 16S rRNA gene and the gyrB gene of Mesoplasma pleciae PS-1 T (=ATCC 49582 T =NBRC 100476 T ) demonstrate a much c...
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| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2004-11, Vol.54 (6), p.1951-1952 |
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| container_title | International journal of systematic and evolutionary microbiology |
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| creator | Knight, Thomas F., Jr |
| description | MIT Computer Science and Artificial Intelligence Laboratory, 32 Vassar Street, Cambridge, MA 02139, USA
Correspondence Thomas F. Knight Jr tk{at}mit.edu
Genomic DNA sequence data for the 16S rRNA gene and the gyrB gene of Mesoplasma pleciae PS-1 T (=ATCC 49582 T =NBRC 100476 T ) demonstrate a much closer relationship to Acholeplasma laidlawii and Acholeplasma oculi than to other species in the order Entomoplasmatales . In addition, the preferred use of UGG rather than UGA as the codon for tryptophan in the gyrB sequence probably places the organism outside the order Entomoplasmatales . It is proposed that M. pleciae be reclassified in the genus Acholeplasma , as Acholeplasma pleciae comb. nov.
Published online ahead of print on 16 April 2004 as DOI 10.1099/ijs.0.02904-0.
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of Mesoplasma pleciae PS-1 T is AY257485 ; that for the partial gyrB sequence of M. pleciae PS-1 T is AY257486 . |
| doi_str_mv | 10.1099/ijs.0.02904-0 |
| format | Article |
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Correspondence Thomas F. Knight Jr tk{at}mit.edu
Genomic DNA sequence data for the 16S rRNA gene and the gyrB gene of Mesoplasma pleciae PS-1 T (=ATCC 49582 T =NBRC 100476 T ) demonstrate a much closer relationship to Acholeplasma laidlawii and Acholeplasma oculi than to other species in the order Entomoplasmatales . In addition, the preferred use of UGG rather than UGA as the codon for tryptophan in the gyrB sequence probably places the organism outside the order Entomoplasmatales . It is proposed that M. pleciae be reclassified in the genus Acholeplasma , as Acholeplasma pleciae comb. nov.
Published online ahead of print on 16 April 2004 as DOI 10.1099/ijs.0.02904-0.
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of Mesoplasma pleciae PS-1 T is AY257485 ; that for the partial gyrB sequence of M. pleciae PS-1 T is AY257486 .</description><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijs.0.02904-0</identifier><identifier>PMID: 15545416</identifier><language>eng</language><publisher>Reading: Soc General Microbiol</publisher><subject>Acholeplasma - classification ; Acholeplasma - genetics ; Acholeplasma laidlawii ; Acholeplasma laidlawii - classification ; Acholeplasma oculi ; Acholeplasma pleciae ; Bacterial Proteins - genetics ; Bacteriology ; Biological and medical sciences ; Codon - genetics ; DNA Gyrase - genetics ; DNA, Bacterial - chemistry ; DNA, Bacterial - isolation & purification ; DNA, Ribosomal - chemistry ; DNA, Ribosomal - isolation & purification ; Entomoplasmataceae - classification ; Entomoplasmataceae - genetics ; Entomoplasmatales ; Fundamental and applied biological sciences. Psychology ; Genes, rRNA ; Mesoplasma pleciae ; Microbiology ; Miscellaneous ; Molecular Sequence Data ; Phylogeny ; Protein Biosynthesis - genetics ; RNA, Bacterial - genetics ; RNA, Ribosomal, 16S - genetics ; Sequence Analysis, DNA ; Systematics ; Tryptophan - metabolism</subject><ispartof>International journal of systematic and evolutionary microbiology, 2004-11, Vol.54 (6), p.1951-1952</ispartof><rights>2005 INIST-CNRS</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c488t-eb6849cd919b2cc4a88fe129f927842648e289de2bb39e20fc4d5c345f3baaf83</citedby><cites>FETCH-LOGICAL-c488t-eb6849cd919b2cc4a88fe129f927842648e289de2bb39e20fc4d5c345f3baaf83</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,3733,3734,27901,27902</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=16287794$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/15545416$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Knight, Thomas F., Jr</creatorcontrib><title>Reclassification of Mesoplasma pleciae as Acholeplasma pleciae comb. nov. on the basis of 16S rRNA and gyrB gene sequence data</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>MIT Computer Science and Artificial Intelligence Laboratory, 32 Vassar Street, Cambridge, MA 02139, USA
Correspondence Thomas F. Knight Jr tk{at}mit.edu
Genomic DNA sequence data for the 16S rRNA gene and the gyrB gene of Mesoplasma pleciae PS-1 T (=ATCC 49582 T =NBRC 100476 T ) demonstrate a much closer relationship to Acholeplasma laidlawii and Acholeplasma oculi than to other species in the order Entomoplasmatales . In addition, the preferred use of UGG rather than UGA as the codon for tryptophan in the gyrB sequence probably places the organism outside the order Entomoplasmatales . It is proposed that M. pleciae be reclassified in the genus Acholeplasma , as Acholeplasma pleciae comb. nov.
Published online ahead of print on 16 April 2004 as DOI 10.1099/ijs.0.02904-0.
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of Mesoplasma pleciae PS-1 T is AY257485 ; that for the partial gyrB sequence of M. pleciae PS-1 T is AY257486 .</description><subject>Acholeplasma - classification</subject><subject>Acholeplasma - genetics</subject><subject>Acholeplasma laidlawii</subject><subject>Acholeplasma laidlawii - classification</subject><subject>Acholeplasma oculi</subject><subject>Acholeplasma pleciae</subject><subject>Bacterial Proteins - genetics</subject><subject>Bacteriology</subject><subject>Biological and medical sciences</subject><subject>Codon - genetics</subject><subject>DNA Gyrase - genetics</subject><subject>DNA, Bacterial - chemistry</subject><subject>DNA, Bacterial - isolation & purification</subject><subject>DNA, Ribosomal - chemistry</subject><subject>DNA, Ribosomal - isolation & purification</subject><subject>Entomoplasmataceae - classification</subject><subject>Entomoplasmataceae - genetics</subject><subject>Entomoplasmatales</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Genes, rRNA</subject><subject>Mesoplasma pleciae</subject><subject>Microbiology</subject><subject>Miscellaneous</subject><subject>Molecular Sequence Data</subject><subject>Phylogeny</subject><subject>Protein Biosynthesis - genetics</subject><subject>RNA, Bacterial - genetics</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Sequence Analysis, DNA</subject><subject>Systematics</subject><subject>Tryptophan - metabolism</subject><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2004</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkb1vFDEQxS1EREKgpEVuQDS72F7ba5dHxJeUBClAbdne8Z2j3fVh74HS8LfHx52IREM1o6ffvBnNQ-gFJS0lWr-Nt6UlLWGa8IY8QmeUS9kI0vHHf3smT9HTUm4JqQIhT9ApFYILTuUZ-n0DfrSlxBC9XWKacQr4CkraVnWyeDuCjxawLXjlN2mEf3SfJtfiOf1scZ1dNoCdLbHsXaj8ivPN9QrbecDru_wOr2EGXODHDmYPeLCLfYZOgh0LPD_Wc_T9w_tvF5-ayy8fP1-sLhvPlVoacFJx7QdNtWPec6tUAMp00KxXnEmugCk9AHOu08BI8HwQvuMidM7aoLpz9Prgu82pri-LmWLxMI52hrQrRvZEaqXYf0Ha972QVFewOYA-p1IyBLPNcbL5zlBi9smYmowh5k8yhlT-5dF45yYYHuhjFBV4dQRs8XYM2c4-lgdOMtX3mlfuzYHbxPXmV8xg6lunWM9wMe2XCm6koVrQ7h4ukaSy</recordid><startdate>20041101</startdate><enddate>20041101</enddate><creator>Knight, Thomas F., Jr</creator><general>Soc General Microbiol</general><general>Society for General Microbiology</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>C1K</scope><scope>7X8</scope></search><sort><creationdate>20041101</creationdate><title>Reclassification of Mesoplasma pleciae as Acholeplasma pleciae comb. nov. on the basis of 16S rRNA and gyrB gene sequence data</title><author>Knight, Thomas F., Jr</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c488t-eb6849cd919b2cc4a88fe129f927842648e289de2bb39e20fc4d5c345f3baaf83</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2004</creationdate><topic>Acholeplasma - classification</topic><topic>Acholeplasma - genetics</topic><topic>Acholeplasma laidlawii</topic><topic>Acholeplasma laidlawii - classification</topic><topic>Acholeplasma oculi</topic><topic>Acholeplasma pleciae</topic><topic>Bacterial Proteins - genetics</topic><topic>Bacteriology</topic><topic>Biological and medical sciences</topic><topic>Codon - genetics</topic><topic>DNA Gyrase - genetics</topic><topic>DNA, Bacterial - chemistry</topic><topic>DNA, Bacterial - isolation & purification</topic><topic>DNA, Ribosomal - chemistry</topic><topic>DNA, Ribosomal - isolation & purification</topic><topic>Entomoplasmataceae - classification</topic><topic>Entomoplasmataceae - genetics</topic><topic>Entomoplasmatales</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Genes, rRNA</topic><topic>Mesoplasma pleciae</topic><topic>Microbiology</topic><topic>Miscellaneous</topic><topic>Molecular Sequence Data</topic><topic>Phylogeny</topic><topic>Protein Biosynthesis - genetics</topic><topic>RNA, Bacterial - genetics</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Sequence Analysis, DNA</topic><topic>Systematics</topic><topic>Tryptophan - metabolism</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Knight, Thomas F., Jr</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Environmental Sciences and Pollution Management</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Knight, Thomas F., Jr</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Reclassification of Mesoplasma pleciae as Acholeplasma pleciae comb. nov. on the basis of 16S rRNA and gyrB gene sequence data</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2004-11-01</date><risdate>2004</risdate><volume>54</volume><issue>6</issue><spage>1951</spage><epage>1952</epage><pages>1951-1952</pages><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>MIT Computer Science and Artificial Intelligence Laboratory, 32 Vassar Street, Cambridge, MA 02139, USA
Correspondence Thomas F. Knight Jr tk{at}mit.edu
Genomic DNA sequence data for the 16S rRNA gene and the gyrB gene of Mesoplasma pleciae PS-1 T (=ATCC 49582 T =NBRC 100476 T ) demonstrate a much closer relationship to Acholeplasma laidlawii and Acholeplasma oculi than to other species in the order Entomoplasmatales . In addition, the preferred use of UGG rather than UGA as the codon for tryptophan in the gyrB sequence probably places the organism outside the order Entomoplasmatales . It is proposed that M. pleciae be reclassified in the genus Acholeplasma , as Acholeplasma pleciae comb. nov.
Published online ahead of print on 16 April 2004 as DOI 10.1099/ijs.0.02904-0.
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of Mesoplasma pleciae PS-1 T is AY257485 ; that for the partial gyrB sequence of M. pleciae PS-1 T is AY257486 .</abstract><cop>Reading</cop><pub>Soc General Microbiol</pub><pmid>15545416</pmid><doi>10.1099/ijs.0.02904-0</doi><tpages>2</tpages><oa>free_for_read</oa></addata></record> |
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| source | MEDLINE; Microbiology Society; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; Alma/SFX Local Collection |
| subjects | Acholeplasma - classification Acholeplasma - genetics Acholeplasma laidlawii Acholeplasma laidlawii - classification Acholeplasma oculi Acholeplasma pleciae Bacterial Proteins - genetics Bacteriology Biological and medical sciences Codon - genetics DNA Gyrase - genetics DNA, Bacterial - chemistry DNA, Bacterial - isolation & purification DNA, Ribosomal - chemistry DNA, Ribosomal - isolation & purification Entomoplasmataceae - classification Entomoplasmataceae - genetics Entomoplasmatales Fundamental and applied biological sciences. Psychology Genes, rRNA Mesoplasma pleciae Microbiology Miscellaneous Molecular Sequence Data Phylogeny Protein Biosynthesis - genetics RNA, Bacterial - genetics RNA, Ribosomal, 16S - genetics Sequence Analysis, DNA Systematics Tryptophan - metabolism |
| title | Reclassification of Mesoplasma pleciae as Acholeplasma pleciae comb. nov. on the basis of 16S rRNA and gyrB gene sequence data |
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