Molecular cloning and characterization of SLC11A1 cDNA in Japanese Quail ( Coturnix Coturnix Japonica)
SLC11A1 is one of the most potent candidate genes conferring host's genetic resistance/susceptibility to various antigenically different intracellular pathogens. In this manuscript, we report the cloning and characterization of the complete coding sequence of SLC11A1 cDNA in Japanese quail. The...
Gespeichert in:
| Veröffentlicht in: | Veterinary immunology and immunopathology 2009-05, Vol.129 (1), p.143-146 |
|---|---|
| Hauptverfasser: | , , , |
| Format: | Artikel |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | 146 |
|---|---|
| container_issue | 1 |
| container_start_page | 143 |
| container_title | Veterinary immunology and immunopathology |
| container_volume | 129 |
| creator | Doiphode, Aakash Rajaravindra, Konadaka S. Das, Dharmeswar Mitra, Abhijit |
| description | SLC11A1 is one of the most potent candidate genes conferring host's genetic resistance/susceptibility to various antigenically different intracellular pathogens. In this manuscript, we report the cloning and characterization of the complete coding sequence of SLC11A1 cDNA in Japanese quail. The 1680
bp of cloned SLC11A1 cDNA consisted of an open reading frame of 1665
bp which coded for a complete protein of 555 amino acid residues. At nucleotide and amino acid sequence levels, Japanese quail SLC11A1 exhibited 95.1 and 96.9% identity with that of chicken, respectively. However, when compared with the mammalian homologues, it exhibited 64.8–66.4% and 64.5–66.9% identity, respectively. Phylogram constructed on the basis of both nucleotide and deduced amino acid sequences revealed similar pattern with the placement of Japanese quail and chicken SLC11A1 in the same clad. |
| doi_str_mv | 10.1016/j.vetimm.2008.11.023 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_67052726</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><els_id>S0165242708007654</els_id><sourcerecordid>67052726</sourcerecordid><originalsourceid>FETCH-LOGICAL-c391t-d17682410616e76aa256dd8b97d86e2a1f9535e568168eb1b204f4b465fe500c3</originalsourceid><addsrcrecordid>eNqFkUFv1DAQha2Kqt2W_oMK-YTgkOBxYse5IK0WSlstRYj2bDnOBLxK4q2dVIVfj1e7Um9wmjl8783oPUIugeXAQH7Y5E84uWHIOWMqB8gZL47IAlRVZFwU5SuySJjIeMmrU3IW44YxJmqlTsgp1CAYFOWCdF99j3buTaC296Mbf1IzttT-MsHYCYP7YybnR-o7-mO9AlgCtZ_ultSN9NZszYgR6ffZuJ6-oys_zWF0zy9LQpKnNe9fk-PO9BEvDvOcPFx9vl9dZ-tvX25Wy3VmixqmrIVKKl4CkyCxksZwIdtWNXXVKoncQFeLQqCQCqTCBhrOyq5sSik6FIzZ4py83ftug3-cMU56cNFi36dP_Ry1rJjgFZf_BZPx7oZIYLkHbfAxBuz0NrjBhN8amN4VoTd6X4TeFaEBdCoiyd4c_OdmwPZFdEg-AR_3AKY4nhwGHa3D0WLrAtpJt979-8JfiUeZmw</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>20481685</pqid></control><display><type>article</type><title>Molecular cloning and characterization of SLC11A1 cDNA in Japanese Quail ( Coturnix Coturnix Japonica)</title><source>MEDLINE</source><source>Elsevier ScienceDirect Journals</source><creator>Doiphode, Aakash ; Rajaravindra, Konadaka S. ; Das, Dharmeswar ; Mitra, Abhijit</creator><creatorcontrib>Doiphode, Aakash ; Rajaravindra, Konadaka S. ; Das, Dharmeswar ; Mitra, Abhijit</creatorcontrib><description>SLC11A1 is one of the most potent candidate genes conferring host's genetic resistance/susceptibility to various antigenically different intracellular pathogens. In this manuscript, we report the cloning and characterization of the complete coding sequence of SLC11A1 cDNA in Japanese quail. The 1680
bp of cloned SLC11A1 cDNA consisted of an open reading frame of 1665
bp which coded for a complete protein of 555 amino acid residues. At nucleotide and amino acid sequence levels, Japanese quail SLC11A1 exhibited 95.1 and 96.9% identity with that of chicken, respectively. However, when compared with the mammalian homologues, it exhibited 64.8–66.4% and 64.5–66.9% identity, respectively. Phylogram constructed on the basis of both nucleotide and deduced amino acid sequences revealed similar pattern with the placement of Japanese quail and chicken SLC11A1 in the same clad.</description><identifier>ISSN: 0165-2427</identifier><identifier>EISSN: 1873-2534</identifier><identifier>DOI: 10.1016/j.vetimm.2008.11.023</identifier><identifier>PMID: 19150134</identifier><language>eng</language><publisher>Netherlands: Elsevier B.V</publisher><subject>Amino Acid Sequence ; Animals ; Base Sequence ; Cation Transport Proteins - genetics ; Cloning, Molecular ; Coturnix - genetics ; Coturnix coturnix japonica ; Coturnix japonica ; Disease resistance ; DNA, Complementary - genetics ; Japanese quail ; Male ; Molecular Sequence Data ; Phylogeny ; Reverse Transcriptase Polymerase Chain Reaction - veterinary ; Sequence Alignment ; SLC11A1</subject><ispartof>Veterinary immunology and immunopathology, 2009-05, Vol.129 (1), p.143-146</ispartof><rights>2008 Elsevier B.V.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c391t-d17682410616e76aa256dd8b97d86e2a1f9535e568168eb1b204f4b465fe500c3</citedby><cites>FETCH-LOGICAL-c391t-d17682410616e76aa256dd8b97d86e2a1f9535e568168eb1b204f4b465fe500c3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S0165242708007654$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,776,780,3536,27903,27904,65309</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/19150134$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Doiphode, Aakash</creatorcontrib><creatorcontrib>Rajaravindra, Konadaka S.</creatorcontrib><creatorcontrib>Das, Dharmeswar</creatorcontrib><creatorcontrib>Mitra, Abhijit</creatorcontrib><title>Molecular cloning and characterization of SLC11A1 cDNA in Japanese Quail ( Coturnix Coturnix Japonica)</title><title>Veterinary immunology and immunopathology</title><addtitle>Vet Immunol Immunopathol</addtitle><description>SLC11A1 is one of the most potent candidate genes conferring host's genetic resistance/susceptibility to various antigenically different intracellular pathogens. In this manuscript, we report the cloning and characterization of the complete coding sequence of SLC11A1 cDNA in Japanese quail. The 1680
bp of cloned SLC11A1 cDNA consisted of an open reading frame of 1665
bp which coded for a complete protein of 555 amino acid residues. At nucleotide and amino acid sequence levels, Japanese quail SLC11A1 exhibited 95.1 and 96.9% identity with that of chicken, respectively. However, when compared with the mammalian homologues, it exhibited 64.8–66.4% and 64.5–66.9% identity, respectively. Phylogram constructed on the basis of both nucleotide and deduced amino acid sequences revealed similar pattern with the placement of Japanese quail and chicken SLC11A1 in the same clad.</description><subject>Amino Acid Sequence</subject><subject>Animals</subject><subject>Base Sequence</subject><subject>Cation Transport Proteins - genetics</subject><subject>Cloning, Molecular</subject><subject>Coturnix - genetics</subject><subject>Coturnix coturnix japonica</subject><subject>Coturnix japonica</subject><subject>Disease resistance</subject><subject>DNA, Complementary - genetics</subject><subject>Japanese quail</subject><subject>Male</subject><subject>Molecular Sequence Data</subject><subject>Phylogeny</subject><subject>Reverse Transcriptase Polymerase Chain Reaction - veterinary</subject><subject>Sequence Alignment</subject><subject>SLC11A1</subject><issn>0165-2427</issn><issn>1873-2534</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2009</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkUFv1DAQha2Kqt2W_oMK-YTgkOBxYse5IK0WSlstRYj2bDnOBLxK4q2dVIVfj1e7Um9wmjl8783oPUIugeXAQH7Y5E84uWHIOWMqB8gZL47IAlRVZFwU5SuySJjIeMmrU3IW44YxJmqlTsgp1CAYFOWCdF99j3buTaC296Mbf1IzttT-MsHYCYP7YybnR-o7-mO9AlgCtZ_ultSN9NZszYgR6ffZuJ6-oys_zWF0zy9LQpKnNe9fk-PO9BEvDvOcPFx9vl9dZ-tvX25Wy3VmixqmrIVKKl4CkyCxksZwIdtWNXXVKoncQFeLQqCQCqTCBhrOyq5sSik6FIzZ4py83ftug3-cMU56cNFi36dP_Ry1rJjgFZf_BZPx7oZIYLkHbfAxBuz0NrjBhN8amN4VoTd6X4TeFaEBdCoiyd4c_OdmwPZFdEg-AR_3AKY4nhwGHa3D0WLrAtpJt979-8JfiUeZmw</recordid><startdate>20090515</startdate><enddate>20090515</enddate><creator>Doiphode, Aakash</creator><creator>Rajaravindra, Konadaka S.</creator><creator>Das, Dharmeswar</creator><creator>Mitra, Abhijit</creator><general>Elsevier B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7T5</scope><scope>7TM</scope><scope>H94</scope><scope>7X8</scope></search><sort><creationdate>20090515</creationdate><title>Molecular cloning and characterization of SLC11A1 cDNA in Japanese Quail ( Coturnix Coturnix Japonica)</title><author>Doiphode, Aakash ; Rajaravindra, Konadaka S. ; Das, Dharmeswar ; Mitra, Abhijit</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c391t-d17682410616e76aa256dd8b97d86e2a1f9535e568168eb1b204f4b465fe500c3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2009</creationdate><topic>Amino Acid Sequence</topic><topic>Animals</topic><topic>Base Sequence</topic><topic>Cation Transport Proteins - genetics</topic><topic>Cloning, Molecular</topic><topic>Coturnix - genetics</topic><topic>Coturnix coturnix japonica</topic><topic>Coturnix japonica</topic><topic>Disease resistance</topic><topic>DNA, Complementary - genetics</topic><topic>Japanese quail</topic><topic>Male</topic><topic>Molecular Sequence Data</topic><topic>Phylogeny</topic><topic>Reverse Transcriptase Polymerase Chain Reaction - veterinary</topic><topic>Sequence Alignment</topic><topic>SLC11A1</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Doiphode, Aakash</creatorcontrib><creatorcontrib>Rajaravindra, Konadaka S.</creatorcontrib><creatorcontrib>Das, Dharmeswar</creatorcontrib><creatorcontrib>Mitra, Abhijit</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Immunology Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Veterinary immunology and immunopathology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Doiphode, Aakash</au><au>Rajaravindra, Konadaka S.</au><au>Das, Dharmeswar</au><au>Mitra, Abhijit</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Molecular cloning and characterization of SLC11A1 cDNA in Japanese Quail ( Coturnix Coturnix Japonica)</atitle><jtitle>Veterinary immunology and immunopathology</jtitle><addtitle>Vet Immunol Immunopathol</addtitle><date>2009-05-15</date><risdate>2009</risdate><volume>129</volume><issue>1</issue><spage>143</spage><epage>146</epage><pages>143-146</pages><issn>0165-2427</issn><eissn>1873-2534</eissn><abstract>SLC11A1 is one of the most potent candidate genes conferring host's genetic resistance/susceptibility to various antigenically different intracellular pathogens. In this manuscript, we report the cloning and characterization of the complete coding sequence of SLC11A1 cDNA in Japanese quail. The 1680
bp of cloned SLC11A1 cDNA consisted of an open reading frame of 1665
bp which coded for a complete protein of 555 amino acid residues. At nucleotide and amino acid sequence levels, Japanese quail SLC11A1 exhibited 95.1 and 96.9% identity with that of chicken, respectively. However, when compared with the mammalian homologues, it exhibited 64.8–66.4% and 64.5–66.9% identity, respectively. Phylogram constructed on the basis of both nucleotide and deduced amino acid sequences revealed similar pattern with the placement of Japanese quail and chicken SLC11A1 in the same clad.</abstract><cop>Netherlands</cop><pub>Elsevier B.V</pub><pmid>19150134</pmid><doi>10.1016/j.vetimm.2008.11.023</doi><tpages>4</tpages></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 0165-2427 |
| ispartof | Veterinary immunology and immunopathology, 2009-05, Vol.129 (1), p.143-146 |
| issn | 0165-2427 1873-2534 |
| language | eng |
| recordid | cdi_proquest_miscellaneous_67052726 |
| source | MEDLINE; Elsevier ScienceDirect Journals |
| subjects | Amino Acid Sequence Animals Base Sequence Cation Transport Proteins - genetics Cloning, Molecular Coturnix - genetics Coturnix coturnix japonica Coturnix japonica Disease resistance DNA, Complementary - genetics Japanese quail Male Molecular Sequence Data Phylogeny Reverse Transcriptase Polymerase Chain Reaction - veterinary Sequence Alignment SLC11A1 |
| title | Molecular cloning and characterization of SLC11A1 cDNA in Japanese Quail ( Coturnix Coturnix Japonica) |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-26T17%3A04%3A03IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Molecular%20cloning%20and%20characterization%20of%20SLC11A1%20cDNA%20in%20Japanese%20Quail%20(%20Coturnix%20Coturnix%20Japonica)&rft.jtitle=Veterinary%20immunology%20and%20immunopathology&rft.au=Doiphode,%20Aakash&rft.date=2009-05-15&rft.volume=129&rft.issue=1&rft.spage=143&rft.epage=146&rft.pages=143-146&rft.issn=0165-2427&rft.eissn=1873-2534&rft_id=info:doi/10.1016/j.vetimm.2008.11.023&rft_dat=%3Cproquest_cross%3E67052726%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=20481685&rft_id=info:pmid/19150134&rft_els_id=S0165242708007654&rfr_iscdi=true |