Culturable Bacteria in Subglacial Sediments and Ice from Two Southern Hemisphere Glaciers
Viable prokaryotes have been detected in basal sediments beneath the few Northern Hemisphere glaciers that have been sampled for microbial communities. However, parallel studies have not previously been conducted in the Southern Hemisphere, and subglacial environments in general are a new and undere...
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Veröffentlicht in: | Microbial ecology 2004-04, Vol.47 (4), p.329-340 |
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description | Viable prokaryotes have been detected in basal sediments beneath the few Northern Hemisphere glaciers that have been sampled for microbial communities. However, parallel studies have not previously been conducted in the Southern Hemisphere, and subglacial environments in general are a new and underexplored niche for microbes. Unfrozen subglacial sediments and overlying glacier ice samples collected aseptically from the Fox Glacier and Franz Josef Glacier in the Southern Alps of New Zealand now have been shown to harbor viable microbial populations. Total direct counts of 2-7 × 10⁶ cells g⁻¹ dry weight sediment were observed, whereas culturable aerobic heterotrophs ranged from 6-9 × 10⁵ colony-forming units g⁻¹ dry weight. Viable counts in the glacier ice typically were 3-4 orders of magnitude smaller than in sediment. Nitrate-reducing and ferric iron-reducing bacteria were detected in sediment samples from both glaciers, but were few or below detection limits in the ice samples. Nitrogen-fixing bacteria were detected only in the Fox Glacier sediment. Restriction fragment analysis of 16S rDNA amplified from 37 pure cultures of aerobic heterotrophs capable of growth at 4°C yielded 23 distinct groups, of which 11 were identified as β-Proteobacteria. 16S rDNA sequences from representatives of these 11 groups were analyzed phylogenetically and shown to cluster with bacteria such as Polaromonas vacuolata and Rhodoferax antarcticus, or with clones obtained from permanently cold environments. Chemical analysis of sediment and ice samples revealed a dilute environment for microbial life. Nevertheless, both the sediment samples and one ice sample demonstrated substantial aerobic mineralization of ¹⁴C-acetate at 8°C, indicating that sufficient nutrients and viable psychrotolerant microbes were present to support metabolism. Unfrozen subglacial sediments may represent a significant global reservoir of biological activity with the potential to influence glacier meltwater chemistry. |
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E. ; Ryburn, J. ; Saul, D. J. ; Lawson, W.</creator><creatorcontrib>Foght, J. ; Aislabie, J. ; Turner, S. ; Brown, C. E. ; Ryburn, J. ; Saul, D. J. ; Lawson, W.</creatorcontrib><description>Viable prokaryotes have been detected in basal sediments beneath the few Northern Hemisphere glaciers that have been sampled for microbial communities. However, parallel studies have not previously been conducted in the Southern Hemisphere, and subglacial environments in general are a new and underexplored niche for microbes. Unfrozen subglacial sediments and overlying glacier ice samples collected aseptically from the Fox Glacier and Franz Josef Glacier in the Southern Alps of New Zealand now have been shown to harbor viable microbial populations. Total direct counts of 2-7 × 10⁶ cells g⁻¹ dry weight sediment were observed, whereas culturable aerobic heterotrophs ranged from 6-9 × 10⁵ colony-forming units g⁻¹ dry weight. Viable counts in the glacier ice typically were 3-4 orders of magnitude smaller than in sediment. Nitrate-reducing and ferric iron-reducing bacteria were detected in sediment samples from both glaciers, but were few or below detection limits in the ice samples. Nitrogen-fixing bacteria were detected only in the Fox Glacier sediment. Restriction fragment analysis of 16S rDNA amplified from 37 pure cultures of aerobic heterotrophs capable of growth at 4°C yielded 23 distinct groups, of which 11 were identified as β-Proteobacteria. 16S rDNA sequences from representatives of these 11 groups were analyzed phylogenetically and shown to cluster with bacteria such as Polaromonas vacuolata and Rhodoferax antarcticus, or with clones obtained from permanently cold environments. Chemical analysis of sediment and ice samples revealed a dilute environment for microbial life. Nevertheless, both the sediment samples and one ice sample demonstrated substantial aerobic mineralization of ¹⁴C-acetate at 8°C, indicating that sufficient nutrients and viable psychrotolerant microbes were present to support metabolism. Unfrozen subglacial sediments may represent a significant global reservoir of biological activity with the potential to influence glacier meltwater chemistry.</description><identifier>ISSN: 0095-3628</identifier><identifier>EISSN: 1432-184X</identifier><identifier>DOI: 10.1007/s00248-003-1036-5</identifier><identifier>PMID: 14994176</identifier><identifier>CODEN: MCBEBU</identifier><language>eng</language><publisher>New York, NY: Springer-Verlag New York Inc</publisher><subject>Alpine glaciers ; Bacteria ; Bacteria - genetics ; Bacteria - metabolism ; Bacteriology ; Base Sequence ; Biological and medical sciences ; Carbon - analysis ; Carbon Radioisotopes ; Chemical analysis ; Colony Count, Microbial ; Detection limits ; DNA Primers ; DNA, Ribosomal - genetics ; Freshwater ; Fundamental and applied biological sciences. Psychology ; Geologic Sediments - microbiology ; Glacial melting ; Glacier terminus ; Glaciers ; Groundwater ; Ice ; Ice Cover - microbiology ; Likelihood Functions ; Meltwater ; Microbial activity ; Microbiology ; Microorganisms ; Mineralization ; Miscellaneous ; Models, Genetic ; Molecular Sequence Data ; New Zealand ; Nitrates ; Nitrogen fixation ; Phylogeny ; Polymorphism, Restriction Fragment Length ; Sediment samplers ; Sediments ; Sequence Analysis, DNA</subject><ispartof>Microbial ecology, 2004-04, Vol.47 (4), p.329-340</ispartof><rights>Copyright 2004 Springer-Verlag New York, LLC</rights><rights>2004 INIST-CNRS</rights><rights>Springer-Verlag New York, Inc. 2004</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c438t-a895c3d670faf9f7c991122ef5b59e11774c1e4027a1e2d0b3d3349bd264bc333</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/25153064$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/25153064$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>314,780,784,803,27924,27925,58017,58250</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=15974326$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/14994176$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Foght, J.</creatorcontrib><creatorcontrib>Aislabie, J.</creatorcontrib><creatorcontrib>Turner, S.</creatorcontrib><creatorcontrib>Brown, C. E.</creatorcontrib><creatorcontrib>Ryburn, J.</creatorcontrib><creatorcontrib>Saul, D. J.</creatorcontrib><creatorcontrib>Lawson, W.</creatorcontrib><title>Culturable Bacteria in Subglacial Sediments and Ice from Two Southern Hemisphere Glaciers</title><title>Microbial ecology</title><addtitle>Microb Ecol</addtitle><description>Viable prokaryotes have been detected in basal sediments beneath the few Northern Hemisphere glaciers that have been sampled for microbial communities. However, parallel studies have not previously been conducted in the Southern Hemisphere, and subglacial environments in general are a new and underexplored niche for microbes. Unfrozen subglacial sediments and overlying glacier ice samples collected aseptically from the Fox Glacier and Franz Josef Glacier in the Southern Alps of New Zealand now have been shown to harbor viable microbial populations. Total direct counts of 2-7 × 10⁶ cells g⁻¹ dry weight sediment were observed, whereas culturable aerobic heterotrophs ranged from 6-9 × 10⁵ colony-forming units g⁻¹ dry weight. Viable counts in the glacier ice typically were 3-4 orders of magnitude smaller than in sediment. Nitrate-reducing and ferric iron-reducing bacteria were detected in sediment samples from both glaciers, but were few or below detection limits in the ice samples. Nitrogen-fixing bacteria were detected only in the Fox Glacier sediment. Restriction fragment analysis of 16S rDNA amplified from 37 pure cultures of aerobic heterotrophs capable of growth at 4°C yielded 23 distinct groups, of which 11 were identified as β-Proteobacteria. 16S rDNA sequences from representatives of these 11 groups were analyzed phylogenetically and shown to cluster with bacteria such as Polaromonas vacuolata and Rhodoferax antarcticus, or with clones obtained from permanently cold environments. Chemical analysis of sediment and ice samples revealed a dilute environment for microbial life. Nevertheless, both the sediment samples and one ice sample demonstrated substantial aerobic mineralization of ¹⁴C-acetate at 8°C, indicating that sufficient nutrients and viable psychrotolerant microbes were present to support metabolism. Unfrozen subglacial sediments may represent a significant global reservoir of biological activity with the potential to influence glacier meltwater chemistry.</description><subject>Alpine glaciers</subject><subject>Bacteria</subject><subject>Bacteria - genetics</subject><subject>Bacteria - metabolism</subject><subject>Bacteriology</subject><subject>Base Sequence</subject><subject>Biological and medical sciences</subject><subject>Carbon - analysis</subject><subject>Carbon Radioisotopes</subject><subject>Chemical analysis</subject><subject>Colony Count, Microbial</subject><subject>Detection limits</subject><subject>DNA Primers</subject><subject>DNA, Ribosomal - genetics</subject><subject>Freshwater</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Geologic Sediments - microbiology</subject><subject>Glacial melting</subject><subject>Glacier terminus</subject><subject>Glaciers</subject><subject>Groundwater</subject><subject>Ice</subject><subject>Ice Cover - microbiology</subject><subject>Likelihood Functions</subject><subject>Meltwater</subject><subject>Microbial activity</subject><subject>Microbiology</subject><subject>Microorganisms</subject><subject>Mineralization</subject><subject>Miscellaneous</subject><subject>Models, Genetic</subject><subject>Molecular Sequence Data</subject><subject>New Zealand</subject><subject>Nitrates</subject><subject>Nitrogen fixation</subject><subject>Phylogeny</subject><subject>Polymorphism, Restriction Fragment Length</subject><subject>Sediment samplers</subject><subject>Sediments</subject><subject>Sequence Analysis, DNA</subject><issn>0095-3628</issn><issn>1432-184X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2004</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNqNkk2LFDEQhoMo7uzqD_CgBGG9tVZSSbpzXAfdXVjwMCvoKaTT1dpDf4xJN-K_N80MLnjRUxLyvJVKnjD2QsBbAVC-SwBSVQUAFgLQFPoR2wiFshCV-vKYbQCsLtDI6oydp7QHEKWR-JSdCWWtyosN-7pd-nmJvu6Jv_dhpth53o18t9Tfeh863_MdNd1A45y4Hxt-G4i3cRr4_c-J76Zl_k5x5Dc0dOmQp8Sv1xjF9Iw9aX2f6PlpvGCfP364394Ud5-ub7dXd0VQWM2Fr6wO2JgSWt_atgzWCiEltbrWloQoSxUEKZClFyQbqLFBVLZupFF1QMQL9uZY9xCnHwul2eVWAvW9H2lakjPGalTG_hNcH0djaf4D1FKAlBl8_Re4n5Y45tu6Sorcu8T1WHGEQpxSitS6Q-wGH385AW7V6I4aXdboVo1O58yrU-GlHqh5SJy8ZeDyBPgUfN9GP4YuPXDalvkfrNzLI7dP8xT_7EstNIJR-Btqiqzd</recordid><startdate>20040401</startdate><enddate>20040401</enddate><creator>Foght, J.</creator><creator>Aislabie, J.</creator><creator>Turner, S.</creator><creator>Brown, C. 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E. ; Ryburn, J. ; Saul, D. J. ; Lawson, W.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c438t-a895c3d670faf9f7c991122ef5b59e11774c1e4027a1e2d0b3d3349bd264bc333</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2004</creationdate><topic>Alpine glaciers</topic><topic>Bacteria</topic><topic>Bacteria - genetics</topic><topic>Bacteria - metabolism</topic><topic>Bacteriology</topic><topic>Base Sequence</topic><topic>Biological and medical sciences</topic><topic>Carbon - analysis</topic><topic>Carbon Radioisotopes</topic><topic>Chemical analysis</topic><topic>Colony Count, Microbial</topic><topic>Detection limits</topic><topic>DNA Primers</topic><topic>DNA, Ribosomal - genetics</topic><topic>Freshwater</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Geologic Sediments - microbiology</topic><topic>Glacial melting</topic><topic>Glacier terminus</topic><topic>Glaciers</topic><topic>Groundwater</topic><topic>Ice</topic><topic>Ice Cover - microbiology</topic><topic>Likelihood Functions</topic><topic>Meltwater</topic><topic>Microbial activity</topic><topic>Microbiology</topic><topic>Microorganisms</topic><topic>Mineralization</topic><topic>Miscellaneous</topic><topic>Models, Genetic</topic><topic>Molecular Sequence Data</topic><topic>New Zealand</topic><topic>Nitrates</topic><topic>Nitrogen fixation</topic><topic>Phylogeny</topic><topic>Polymorphism, Restriction Fragment Length</topic><topic>Sediment samplers</topic><topic>Sediments</topic><topic>Sequence Analysis, DNA</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Foght, J.</creatorcontrib><creatorcontrib>Aislabie, J.</creatorcontrib><creatorcontrib>Turner, S.</creatorcontrib><creatorcontrib>Brown, C. 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E.</au><au>Ryburn, J.</au><au>Saul, D. J.</au><au>Lawson, W.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Culturable Bacteria in Subglacial Sediments and Ice from Two Southern Hemisphere Glaciers</atitle><jtitle>Microbial ecology</jtitle><addtitle>Microb Ecol</addtitle><date>2004-04-01</date><risdate>2004</risdate><volume>47</volume><issue>4</issue><spage>329</spage><epage>340</epage><pages>329-340</pages><issn>0095-3628</issn><eissn>1432-184X</eissn><coden>MCBEBU</coden><abstract>Viable prokaryotes have been detected in basal sediments beneath the few Northern Hemisphere glaciers that have been sampled for microbial communities. However, parallel studies have not previously been conducted in the Southern Hemisphere, and subglacial environments in general are a new and underexplored niche for microbes. Unfrozen subglacial sediments and overlying glacier ice samples collected aseptically from the Fox Glacier and Franz Josef Glacier in the Southern Alps of New Zealand now have been shown to harbor viable microbial populations. Total direct counts of 2-7 × 10⁶ cells g⁻¹ dry weight sediment were observed, whereas culturable aerobic heterotrophs ranged from 6-9 × 10⁵ colony-forming units g⁻¹ dry weight. Viable counts in the glacier ice typically were 3-4 orders of magnitude smaller than in sediment. Nitrate-reducing and ferric iron-reducing bacteria were detected in sediment samples from both glaciers, but were few or below detection limits in the ice samples. Nitrogen-fixing bacteria were detected only in the Fox Glacier sediment. Restriction fragment analysis of 16S rDNA amplified from 37 pure cultures of aerobic heterotrophs capable of growth at 4°C yielded 23 distinct groups, of which 11 were identified as β-Proteobacteria. 16S rDNA sequences from representatives of these 11 groups were analyzed phylogenetically and shown to cluster with bacteria such as Polaromonas vacuolata and Rhodoferax antarcticus, or with clones obtained from permanently cold environments. Chemical analysis of sediment and ice samples revealed a dilute environment for microbial life. Nevertheless, both the sediment samples and one ice sample demonstrated substantial aerobic mineralization of ¹⁴C-acetate at 8°C, indicating that sufficient nutrients and viable psychrotolerant microbes were present to support metabolism. Unfrozen subglacial sediments may represent a significant global reservoir of biological activity with the potential to influence glacier meltwater chemistry.</abstract><cop>New York, NY</cop><pub>Springer-Verlag New York Inc</pub><pmid>14994176</pmid><doi>10.1007/s00248-003-1036-5</doi><tpages>12</tpages></addata></record> |
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subjects | Alpine glaciers Bacteria Bacteria - genetics Bacteria - metabolism Bacteriology Base Sequence Biological and medical sciences Carbon - analysis Carbon Radioisotopes Chemical analysis Colony Count, Microbial Detection limits DNA Primers DNA, Ribosomal - genetics Freshwater Fundamental and applied biological sciences. Psychology Geologic Sediments - microbiology Glacial melting Glacier terminus Glaciers Groundwater Ice Ice Cover - microbiology Likelihood Functions Meltwater Microbial activity Microbiology Microorganisms Mineralization Miscellaneous Models, Genetic Molecular Sequence Data New Zealand Nitrates Nitrogen fixation Phylogeny Polymorphism, Restriction Fragment Length Sediment samplers Sediments Sequence Analysis, DNA |
title | Culturable Bacteria in Subglacial Sediments and Ice from Two Southern Hemisphere Glaciers |
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