Putative Quantitative Trait Loci Associated with Calcium Content in Soybean Seed
Seed calcium content is an important quality attribute of specialty soybean [Glycine max (L.) Merr.] for soyfoods. However, analyzing seed for calcium content is time consuming and labor intensive. Knowing quantitative trait loci (QTL) for seed calcium will facilitate the development of elite cultiv...
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| Veröffentlicht in: | The Journal of heredity 2009-03, Vol.100 (2), p.263-269 |
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| creator | Zhang, Bo Chen, Pengyin Shi, Ainong Hou, Anfu Ishibashi, Tetsuaki Wang, Dechun |
| description | Seed calcium content is an important quality attribute of specialty soybean [Glycine max (L.) Merr.] for soyfoods. However, analyzing seed for calcium content is time consuming and labor intensive. Knowing quantitative trait loci (QTL) for seed calcium will facilitate the development of elite cultivars with proper calcium content through marker-assisted selection (MAS). The objective of this study was to identify major QTL associated with calcium content in soybean seed. Calcium content was tested in 178 F2:3 and 157 F2:4 lines derived from the cross of SS-516 (low calcium) × Camp (high calcium). The F2:3 lines were genotyped with 148 simple sequence repeat markers in a previous study on seed hardness, and the genotypic data were used in the QTL analysis of the current study. Four QTL designated as Ca1, Ca2, Ca3, and Ca4 on linkage groups (LGs) A2, I, and M were identified by both single-marker analysis and composite-interval mapping, and the QTL accounted for 10.7%, 16.3%, 14.9%, and 9.7% of calcium content variation, respectively. In addition, multiple-interval mapping analysis revealed a significant dominant-by-dominant interaction effect between Ca1 and Ca3, which accounted for 4.3% calcium content variation. These QTL will facilitate the implementation of MAS for calcium content in soybean-breeding programs. |
| doi_str_mv | 10.1093/jhered/esn096 |
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Merr.] for soyfoods. However, analyzing seed for calcium content is time consuming and labor intensive. Knowing quantitative trait loci (QTL) for seed calcium will facilitate the development of elite cultivars with proper calcium content through marker-assisted selection (MAS). The objective of this study was to identify major QTL associated with calcium content in soybean seed. Calcium content was tested in 178 F2:3 and 157 F2:4 lines derived from the cross of SS-516 (low calcium) × Camp (high calcium). The F2:3 lines were genotyped with 148 simple sequence repeat markers in a previous study on seed hardness, and the genotypic data were used in the QTL analysis of the current study. Four QTL designated as Ca1, Ca2, Ca3, and Ca4 on linkage groups (LGs) A2, I, and M were identified by both single-marker analysis and composite-interval mapping, and the QTL accounted for 10.7%, 16.3%, 14.9%, and 9.7% of calcium content variation, respectively. In addition, multiple-interval mapping analysis revealed a significant dominant-by-dominant interaction effect between Ca1 and Ca3, which accounted for 4.3% calcium content variation. These QTL will facilitate the implementation of MAS for calcium content in soybean-breeding programs.</description><identifier>ISSN: 0022-1503</identifier><identifier>EISSN: 1465-7333</identifier><identifier>DOI: 10.1093/jhered/esn096</identifier><identifier>PMID: 18984858</identifier><identifier>CODEN: JOHEA8</identifier><language>eng</language><publisher>United States: The American Genetic Association</publisher><subject>Calcium ; Calcium - metabolism ; Chromosome Mapping ; Crosses, Genetic ; Cultivars ; Genetic Markers ; Genetics ; Genotype & phenotype ; Glycine max ; Glycine max - genetics ; Glycine max - metabolism ; Minisatellite Repeats - genetics ; quantitative trait loci ; Quantitative Trait Loci - physiology ; Quantitative Trait, Heritable ; Seeds ; Seeds - genetics ; Seeds - metabolism ; soybean (Glycine max) ; Soybeans</subject><ispartof>The Journal of heredity, 2009-03, Vol.100 (2), p.263-269</ispartof><rights>The American Genetic Association. 2008. All rights reserved. For permissions, please email: journals.permissions@oxfordjournals.org. 2009</rights><rights>The American Genetic Association. 2008. All rights reserved. For permissions, please email: journals.permissions@oxfordjournals.org.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c483t-24281e7042050b35b6d39c3cb4ccd5b2d5cdb3bb91766314e3f7f10bbdfda2423</citedby><cites>FETCH-LOGICAL-c483t-24281e7042050b35b6d39c3cb4ccd5b2d5cdb3bb91766314e3f7f10bbdfda2423</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,1583,27923,27924</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/18984858$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zhang, Bo</creatorcontrib><creatorcontrib>Chen, Pengyin</creatorcontrib><creatorcontrib>Shi, Ainong</creatorcontrib><creatorcontrib>Hou, Anfu</creatorcontrib><creatorcontrib>Ishibashi, Tetsuaki</creatorcontrib><creatorcontrib>Wang, Dechun</creatorcontrib><title>Putative Quantitative Trait Loci Associated with Calcium Content in Soybean Seed</title><title>The Journal of heredity</title><addtitle>J Hered</addtitle><description>Seed calcium content is an important quality attribute of specialty soybean [Glycine max (L.) Merr.] for soyfoods. However, analyzing seed for calcium content is time consuming and labor intensive. Knowing quantitative trait loci (QTL) for seed calcium will facilitate the development of elite cultivars with proper calcium content through marker-assisted selection (MAS). The objective of this study was to identify major QTL associated with calcium content in soybean seed. Calcium content was tested in 178 F2:3 and 157 F2:4 lines derived from the cross of SS-516 (low calcium) × Camp (high calcium). The F2:3 lines were genotyped with 148 simple sequence repeat markers in a previous study on seed hardness, and the genotypic data were used in the QTL analysis of the current study. Four QTL designated as Ca1, Ca2, Ca3, and Ca4 on linkage groups (LGs) A2, I, and M were identified by both single-marker analysis and composite-interval mapping, and the QTL accounted for 10.7%, 16.3%, 14.9%, and 9.7% of calcium content variation, respectively. In addition, multiple-interval mapping analysis revealed a significant dominant-by-dominant interaction effect between Ca1 and Ca3, which accounted for 4.3% calcium content variation. These QTL will facilitate the implementation of MAS for calcium content in soybean-breeding programs.</description><subject>Calcium</subject><subject>Calcium - metabolism</subject><subject>Chromosome Mapping</subject><subject>Crosses, Genetic</subject><subject>Cultivars</subject><subject>Genetic Markers</subject><subject>Genetics</subject><subject>Genotype & phenotype</subject><subject>Glycine max</subject><subject>Glycine max - genetics</subject><subject>Glycine max - metabolism</subject><subject>Minisatellite Repeats - genetics</subject><subject>quantitative trait loci</subject><subject>Quantitative Trait Loci - physiology</subject><subject>Quantitative Trait, Heritable</subject><subject>Seeds</subject><subject>Seeds - genetics</subject><subject>Seeds - metabolism</subject><subject>soybean (Glycine max)</subject><subject>Soybeans</subject><issn>0022-1503</issn><issn>1465-7333</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2009</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqF0sFv0zAUBnALgVhXOHKFiMPEJew5L3bi49RtbFIRRdsAcbFsx2EubVxsZ7D_fqkS7cBlp0-2fn6W9ZmQNxQ-UhB4vL61wTbHNnYg-DMyoyVneYWIz8kMoChyygAPyGGMawCgTMBLckBrUZc1q2dkteqTSu7OZl971SU3La6DcilbeuOykxiHUMk22V-XbrOF2hjXb7OF75LtUua67Mrfa6uGtLZ5RV60ahPt6ynn5Ob87HpxkS-_fLpcnCxzU9aY8qIsamorKAtgoJFp3qAwaHRpTMN00TDTaNRa0IpzpKXFtmopaN20jRoO45wcjXN3wf_pbUxy66Kxm43qrO-j5FwgMFE_CQsoOcKg5-T9f3Dt-9ANj5BU1BSqAnBA-YhM8DEG28pdcFsV7iUFuS9EjoXIsZDBv52G9no7bD_qqYEBfBiB73dPzprudjHZf49Yhd-SV1gxefHjpzxdnX__vPx2Kvf-3ehb5aX6FVyUN1cFUNx_AwQU-ADP7K4I</recordid><startdate>20090301</startdate><enddate>20090301</enddate><creator>Zhang, Bo</creator><creator>Chen, Pengyin</creator><creator>Shi, Ainong</creator><creator>Hou, Anfu</creator><creator>Ishibashi, Tetsuaki</creator><creator>Wang, Dechun</creator><general>The American Genetic Association</general><general>Oxford University Press</general><general>Oxford Publishing Limited (England)</general><scope>FBQ</scope><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QG</scope><scope>7SN</scope><scope>7SS</scope><scope>7TK</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>K9.</scope><scope>P64</scope><scope>RC3</scope><scope>7QP</scope><scope>7X8</scope></search><sort><creationdate>20090301</creationdate><title>Putative Quantitative Trait Loci Associated with Calcium Content in Soybean Seed</title><author>Zhang, Bo ; Chen, Pengyin ; Shi, Ainong ; Hou, Anfu ; Ishibashi, Tetsuaki ; Wang, Dechun</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c483t-24281e7042050b35b6d39c3cb4ccd5b2d5cdb3bb91766314e3f7f10bbdfda2423</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2009</creationdate><topic>Calcium</topic><topic>Calcium - metabolism</topic><topic>Chromosome Mapping</topic><topic>Crosses, Genetic</topic><topic>Cultivars</topic><topic>Genetic Markers</topic><topic>Genetics</topic><topic>Genotype & phenotype</topic><topic>Glycine max</topic><topic>Glycine max - genetics</topic><topic>Glycine max - metabolism</topic><topic>Minisatellite Repeats - genetics</topic><topic>quantitative trait loci</topic><topic>Quantitative Trait Loci - physiology</topic><topic>Quantitative Trait, Heritable</topic><topic>Seeds</topic><topic>Seeds - genetics</topic><topic>Seeds - metabolism</topic><topic>soybean (Glycine max)</topic><topic>Soybeans</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zhang, Bo</creatorcontrib><creatorcontrib>Chen, Pengyin</creatorcontrib><creatorcontrib>Shi, Ainong</creatorcontrib><creatorcontrib>Hou, Anfu</creatorcontrib><creatorcontrib>Ishibashi, Tetsuaki</creatorcontrib><creatorcontrib>Wang, Dechun</creatorcontrib><collection>AGRIS</collection><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Animal Behavior Abstracts</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Neurosciences Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>The Journal of heredity</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zhang, Bo</au><au>Chen, Pengyin</au><au>Shi, Ainong</au><au>Hou, Anfu</au><au>Ishibashi, Tetsuaki</au><au>Wang, Dechun</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Putative Quantitative Trait Loci Associated with Calcium Content in Soybean Seed</atitle><jtitle>The Journal of heredity</jtitle><addtitle>J Hered</addtitle><date>2009-03-01</date><risdate>2009</risdate><volume>100</volume><issue>2</issue><spage>263</spage><epage>269</epage><pages>263-269</pages><issn>0022-1503</issn><eissn>1465-7333</eissn><coden>JOHEA8</coden><abstract>Seed calcium content is an important quality attribute of specialty soybean [Glycine max (L.) Merr.] for soyfoods. However, analyzing seed for calcium content is time consuming and labor intensive. Knowing quantitative trait loci (QTL) for seed calcium will facilitate the development of elite cultivars with proper calcium content through marker-assisted selection (MAS). The objective of this study was to identify major QTL associated with calcium content in soybean seed. Calcium content was tested in 178 F2:3 and 157 F2:4 lines derived from the cross of SS-516 (low calcium) × Camp (high calcium). The F2:3 lines were genotyped with 148 simple sequence repeat markers in a previous study on seed hardness, and the genotypic data were used in the QTL analysis of the current study. Four QTL designated as Ca1, Ca2, Ca3, and Ca4 on linkage groups (LGs) A2, I, and M were identified by both single-marker analysis and composite-interval mapping, and the QTL accounted for 10.7%, 16.3%, 14.9%, and 9.7% of calcium content variation, respectively. 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| subjects | Calcium Calcium - metabolism Chromosome Mapping Crosses, Genetic Cultivars Genetic Markers Genetics Genotype & phenotype Glycine max Glycine max - genetics Glycine max - metabolism Minisatellite Repeats - genetics quantitative trait loci Quantitative Trait Loci - physiology Quantitative Trait, Heritable Seeds Seeds - genetics Seeds - metabolism soybean (Glycine max) Soybeans |
| title | Putative Quantitative Trait Loci Associated with Calcium Content in Soybean Seed |
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