Phylogenetic relationships among iguanian lizards using alternative partitioning methods and TSHZ1: A new phylogenetic marker for reptiles
We present phylogenetic hypotheses for the major iguanian lizard lineages and several squamate outgroups using a combined analysis of 4950 aligned base positions representing two intronless nuclear genes, TSHZ1 and RAG1. Bayesian analyses using reversible jump (RJ) mixture model selection are conduc...
Gespeichert in:
| Veröffentlicht in: | Molecular phylogenetics and evolution 2009-02, Vol.50 (2), p.391-396 |
|---|---|
| Hauptverfasser: | , |
| Format: | Artikel |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | 396 |
|---|---|
| container_issue | 2 |
| container_start_page | 391 |
| container_title | Molecular phylogenetics and evolution |
| container_volume | 50 |
| creator | Schulte, James A. Cartwright, Eva M. |
| description | We present phylogenetic hypotheses for the major iguanian lizard lineages and several squamate outgroups using a combined analysis of 4950 aligned base positions representing two intronless nuclear genes, TSHZ1 and RAG1. Bayesian analyses using reversible jump (RJ) mixture model selection are conducted and compared with a priori partitioned, mixed model maximum likelihood analyses. Bayesian credibility values and ML bootstraps are comparable with strong support at deep nodes and within acrodonts, but weak support for the twelve iguanid lineages. Accounting for pattern and rate heterogeneity is becoming commonplace and is essential for accurate phylogeny reconstruction. |
| doi_str_mv | 10.1016/j.ympev.2008.10.018 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_66805730</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><els_id>S1055790308005113</els_id><sourcerecordid>66805730</sourcerecordid><originalsourceid>FETCH-LOGICAL-c357t-79d839a5cfedc8cee195c4a61d0b6f730f225b31355fbe60474b833f8c9c42c53</originalsourceid><addsrcrecordid>eNp9UctKxDAUDaL4_gJBsnI3Y9JM-hBciPgCQUHduAlpejuTsU1qko6Mn-BXmzoDunKVcHIe9-YgdETJmBKans7Hy7aDxTghJI_ImNB8A-1SUvBRwSnbHO6cj7KCsB205_2cEEp5wbfRDi1IkmY82UVfj7NlY6dgIGiFHTQyaGv8THcey9aaKdbTXhotDW70p3SVx73XEZZNAGciewG4ky7oQTc8tBBmNtKkqfDz0-0rPcMX2MAH7v4mtdK9gcO1dTG0C7oBf4C2atl4OFyf--jl-ur58nZ0_3Bzd3lxP1KMZyHuU-WskFzVUKlcAdCCq4lMaUXKtM4YqZOEl4wyzusSUjLJJmXOWJ2rQk0Sxdk-Oln5ds6-9-CDaLVX0DTSgO29SNOc8OgTiWxFVM5676AWndNx8KWgRAwViLn4qUAMFQxgrCCqjtf2fdlC9atZ_3kknK8IEJdcaHDCKw1GQaUdqCAqq_8N-AZE6pyh</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>66805730</pqid></control><display><type>article</type><title>Phylogenetic relationships among iguanian lizards using alternative partitioning methods and TSHZ1: A new phylogenetic marker for reptiles</title><source>MEDLINE</source><source>Elsevier ScienceDirect Journals Complete</source><creator>Schulte, James A. ; Cartwright, Eva M.</creator><creatorcontrib>Schulte, James A. ; Cartwright, Eva M.</creatorcontrib><description>We present phylogenetic hypotheses for the major iguanian lizard lineages and several squamate outgroups using a combined analysis of 4950 aligned base positions representing two intronless nuclear genes, TSHZ1 and RAG1. Bayesian analyses using reversible jump (RJ) mixture model selection are conducted and compared with a priori partitioned, mixed model maximum likelihood analyses. Bayesian credibility values and ML bootstraps are comparable with strong support at deep nodes and within acrodonts, but weak support for the twelve iguanid lineages. Accounting for pattern and rate heterogeneity is becoming commonplace and is essential for accurate phylogeny reconstruction.</description><identifier>ISSN: 1055-7903</identifier><identifier>EISSN: 1095-9513</identifier><identifier>DOI: 10.1016/j.ympev.2008.10.018</identifier><identifier>PMID: 19026752</identifier><language>eng</language><publisher>United States: Elsevier Inc</publisher><subject>Agamidae ; Animals ; Bayes Theorem ; Chamaeleonidae ; Evolution, Molecular ; Genes, RAG-1 ; Genetic Markers ; Genetic Variation ; Iguania ; Iguanidae ; Likelihood Functions ; Lizards - classification ; Lizards - genetics ; Maximum likelihood ; Mixed model ; Models, Genetic ; Nuclear DNA ; Phylogeny ; Protein domain architecture ; Sequence Alignment ; Sequence Analysis, DNA ; Squamata</subject><ispartof>Molecular phylogenetics and evolution, 2009-02, Vol.50 (2), p.391-396</ispartof><rights>2008 Elsevier Inc.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c357t-79d839a5cfedc8cee195c4a61d0b6f730f225b31355fbe60474b833f8c9c42c53</citedby><cites>FETCH-LOGICAL-c357t-79d839a5cfedc8cee195c4a61d0b6f730f225b31355fbe60474b833f8c9c42c53</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.ympev.2008.10.018$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,780,784,3541,27915,27916,45986</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/19026752$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Schulte, James A.</creatorcontrib><creatorcontrib>Cartwright, Eva M.</creatorcontrib><title>Phylogenetic relationships among iguanian lizards using alternative partitioning methods and TSHZ1: A new phylogenetic marker for reptiles</title><title>Molecular phylogenetics and evolution</title><addtitle>Mol Phylogenet Evol</addtitle><description>We present phylogenetic hypotheses for the major iguanian lizard lineages and several squamate outgroups using a combined analysis of 4950 aligned base positions representing two intronless nuclear genes, TSHZ1 and RAG1. Bayesian analyses using reversible jump (RJ) mixture model selection are conducted and compared with a priori partitioned, mixed model maximum likelihood analyses. Bayesian credibility values and ML bootstraps are comparable with strong support at deep nodes and within acrodonts, but weak support for the twelve iguanid lineages. Accounting for pattern and rate heterogeneity is becoming commonplace and is essential for accurate phylogeny reconstruction.</description><subject>Agamidae</subject><subject>Animals</subject><subject>Bayes Theorem</subject><subject>Chamaeleonidae</subject><subject>Evolution, Molecular</subject><subject>Genes, RAG-1</subject><subject>Genetic Markers</subject><subject>Genetic Variation</subject><subject>Iguania</subject><subject>Iguanidae</subject><subject>Likelihood Functions</subject><subject>Lizards - classification</subject><subject>Lizards - genetics</subject><subject>Maximum likelihood</subject><subject>Mixed model</subject><subject>Models, Genetic</subject><subject>Nuclear DNA</subject><subject>Phylogeny</subject><subject>Protein domain architecture</subject><subject>Sequence Alignment</subject><subject>Sequence Analysis, DNA</subject><subject>Squamata</subject><issn>1055-7903</issn><issn>1095-9513</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2009</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9UctKxDAUDaL4_gJBsnI3Y9JM-hBciPgCQUHduAlpejuTsU1qko6Mn-BXmzoDunKVcHIe9-YgdETJmBKans7Hy7aDxTghJI_ImNB8A-1SUvBRwSnbHO6cj7KCsB205_2cEEp5wbfRDi1IkmY82UVfj7NlY6dgIGiFHTQyaGv8THcey9aaKdbTXhotDW70p3SVx73XEZZNAGciewG4ky7oQTc8tBBmNtKkqfDz0-0rPcMX2MAH7v4mtdK9gcO1dTG0C7oBf4C2atl4OFyf--jl-ur58nZ0_3Bzd3lxP1KMZyHuU-WskFzVUKlcAdCCq4lMaUXKtM4YqZOEl4wyzusSUjLJJmXOWJ2rQk0Sxdk-Oln5ds6-9-CDaLVX0DTSgO29SNOc8OgTiWxFVM5676AWndNx8KWgRAwViLn4qUAMFQxgrCCqjtf2fdlC9atZ_3kknK8IEJdcaHDCKw1GQaUdqCAqq_8N-AZE6pyh</recordid><startdate>20090201</startdate><enddate>20090201</enddate><creator>Schulte, James A.</creator><creator>Cartwright, Eva M.</creator><general>Elsevier Inc</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20090201</creationdate><title>Phylogenetic relationships among iguanian lizards using alternative partitioning methods and TSHZ1: A new phylogenetic marker for reptiles</title><author>Schulte, James A. ; Cartwright, Eva M.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c357t-79d839a5cfedc8cee195c4a61d0b6f730f225b31355fbe60474b833f8c9c42c53</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2009</creationdate><topic>Agamidae</topic><topic>Animals</topic><topic>Bayes Theorem</topic><topic>Chamaeleonidae</topic><topic>Evolution, Molecular</topic><topic>Genes, RAG-1</topic><topic>Genetic Markers</topic><topic>Genetic Variation</topic><topic>Iguania</topic><topic>Iguanidae</topic><topic>Likelihood Functions</topic><topic>Lizards - classification</topic><topic>Lizards - genetics</topic><topic>Maximum likelihood</topic><topic>Mixed model</topic><topic>Models, Genetic</topic><topic>Nuclear DNA</topic><topic>Phylogeny</topic><topic>Protein domain architecture</topic><topic>Sequence Alignment</topic><topic>Sequence Analysis, DNA</topic><topic>Squamata</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Schulte, James A.</creatorcontrib><creatorcontrib>Cartwright, Eva M.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Molecular phylogenetics and evolution</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Schulte, James A.</au><au>Cartwright, Eva M.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Phylogenetic relationships among iguanian lizards using alternative partitioning methods and TSHZ1: A new phylogenetic marker for reptiles</atitle><jtitle>Molecular phylogenetics and evolution</jtitle><addtitle>Mol Phylogenet Evol</addtitle><date>2009-02-01</date><risdate>2009</risdate><volume>50</volume><issue>2</issue><spage>391</spage><epage>396</epage><pages>391-396</pages><issn>1055-7903</issn><eissn>1095-9513</eissn><abstract>We present phylogenetic hypotheses for the major iguanian lizard lineages and several squamate outgroups using a combined analysis of 4950 aligned base positions representing two intronless nuclear genes, TSHZ1 and RAG1. Bayesian analyses using reversible jump (RJ) mixture model selection are conducted and compared with a priori partitioned, mixed model maximum likelihood analyses. Bayesian credibility values and ML bootstraps are comparable with strong support at deep nodes and within acrodonts, but weak support for the twelve iguanid lineages. Accounting for pattern and rate heterogeneity is becoming commonplace and is essential for accurate phylogeny reconstruction.</abstract><cop>United States</cop><pub>Elsevier Inc</pub><pmid>19026752</pmid><doi>10.1016/j.ympev.2008.10.018</doi><tpages>6</tpages></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 1055-7903 |
| ispartof | Molecular phylogenetics and evolution, 2009-02, Vol.50 (2), p.391-396 |
| issn | 1055-7903 1095-9513 |
| language | eng |
| recordid | cdi_proquest_miscellaneous_66805730 |
| source | MEDLINE; Elsevier ScienceDirect Journals Complete |
| subjects | Agamidae Animals Bayes Theorem Chamaeleonidae Evolution, Molecular Genes, RAG-1 Genetic Markers Genetic Variation Iguania Iguanidae Likelihood Functions Lizards - classification Lizards - genetics Maximum likelihood Mixed model Models, Genetic Nuclear DNA Phylogeny Protein domain architecture Sequence Alignment Sequence Analysis, DNA Squamata |
| title | Phylogenetic relationships among iguanian lizards using alternative partitioning methods and TSHZ1: A new phylogenetic marker for reptiles |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-14T18%3A26%3A01IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Phylogenetic%20relationships%20among%20iguanian%20lizards%20using%20alternative%20partitioning%20methods%20and%20TSHZ1:%20A%20new%20phylogenetic%20marker%20for%20reptiles&rft.jtitle=Molecular%20phylogenetics%20and%20evolution&rft.au=Schulte,%20James%20A.&rft.date=2009-02-01&rft.volume=50&rft.issue=2&rft.spage=391&rft.epage=396&rft.pages=391-396&rft.issn=1055-7903&rft.eissn=1095-9513&rft_id=info:doi/10.1016/j.ympev.2008.10.018&rft_dat=%3Cproquest_cross%3E66805730%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=66805730&rft_id=info:pmid/19026752&rft_els_id=S1055790308005113&rfr_iscdi=true |