Non-monophyly of the woody bamboos (Bambuseae; Poaceae): A multi-gene region phylogenetic analysis of Bambusoideae s.s
The taxonomy of Bambusoideae is in a state of flux and phylogenetic studies are required to help resolve systematic issues. Over 60 taxa, representing all subtribes of Bambuseae and related non-bambusoid grasses were sampled. A combined analysis of five plastid DNA regions, trnL intron, trnL-F inter...
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| Veröffentlicht in: | Journal of plant research 2009-01, Vol.122 (1), p.95-108 |
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| creator | Sungkaew, S.(Kasetsart Univ., Bangkok (Thailand)) Stapleton, C.M.A Salamin, N Hodkinson, T.R |
| description | The taxonomy of Bambusoideae is in a state of flux and phylogenetic studies are required to help resolve systematic issues. Over 60 taxa, representing all subtribes of Bambuseae and related non-bambusoid grasses were sampled. A combined analysis of five plastid DNA regions, trnL intron, trnL-F intergenic spacer, atpB-rbcL intergenic spacer, rps16 intron, and matK, was used to study the phylogenetic relationships among the bamboos in general and the woody bamboos in particular. Within the BEP clade (Bambusoideae s.s., Ehrhartoideae, Pooideae), Pooideae were resolved as sister to Bambusoideae s.s. Tribe Bambuseae, the woody bamboos, as currently recognized were not monophyletic because Olyreae, the herbaceous bamboos, were sister to tropical Bambuseae. Temperate Bambuseae were sister to the group consisting of tropical Bambuseae and Olyreae. Thus, the temperate Bambuseae would be better treated as their own tribe Arundinarieae than as a subgroup of Bambuseae. Within the tropical Bambuseae, neotropical Bambuseae were sister to the palaeotropical and Austral Bambuseae. In addition, Melocanninae were found to be sister to the remaining palaeotropical and Austral Bambuseae. We discuss phylogenetic and morphological patterns of diversification and interpret them in a biogeographic context. |
| doi_str_mv | 10.1007/s10265-008-0192-6 |
| format | Article |
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Over 60 taxa, representing all subtribes of Bambuseae and related non-bambusoid grasses were sampled. A combined analysis of five plastid DNA regions, trnL intron, trnL-F intergenic spacer, atpB-rbcL intergenic spacer, rps16 intron, and matK, was used to study the phylogenetic relationships among the bamboos in general and the woody bamboos in particular. Within the BEP clade (Bambusoideae s.s., Ehrhartoideae, Pooideae), Pooideae were resolved as sister to Bambusoideae s.s. Tribe Bambuseae, the woody bamboos, as currently recognized were not monophyletic because Olyreae, the herbaceous bamboos, were sister to tropical Bambuseae. Temperate Bambuseae were sister to the group consisting of tropical Bambuseae and Olyreae. Thus, the temperate Bambuseae would be better treated as their own tribe Arundinarieae than as a subgroup of Bambuseae. Within the tropical Bambuseae, neotropical Bambuseae were sister to the palaeotropical and Austral Bambuseae. In addition, Melocanninae were found to be sister to the remaining palaeotropical and Austral Bambuseae. We discuss phylogenetic and morphological patterns of diversification and interpret them in a biogeographic context.</description><identifier>ISSN: 0918-9440</identifier><identifier>EISSN: 1618-0860</identifier><identifier>DOI: 10.1007/s10265-008-0192-6</identifier><identifier>PMID: 19018609</identifier><language>eng</language><publisher>Japan: Springer Japan</publisher><subject>ADN ; Bamboo ; Bambusoideae ; BIOLOGIA MOLECULAR ; BIOLOGIE MOLECULAIRE ; Biomedical and Life Sciences ; CLASIFICACION ; CLASSIFICATION ; Demography ; DNA ; DNA, Plant - genetics ; FILOGENIA ; GENETIC MARKERS ; Genetics ; Life Sciences ; MARCADORES GENETICOS ; MARQUEUR GENETIQUE ; METHODE STATISTIQUE ; METODOS ESTADISTICOS ; MOLECULAR BIOLOGY ; Multigene Family - genetics ; NUCLEOTIDE SEQUENCE ; PCR ; PHYLOGENIE ; PHYLOGENY ; Plant Biochemistry ; Plant biology ; Plant Ecology ; Plant Physiology ; Plant Sciences ; POACEAE ; Poaceae - classification ; Poaceae - genetics ; Regular Paper ; SECUENCIA NUCLEOTIDICA ; SEQUENCE NUCLEOTIDIQUE ; STATISTICAL METHODS ; Taxonomy</subject><ispartof>Journal of plant research, 2009-01, Vol.122 (1), p.95-108</ispartof><rights>The Botanical Society of Japan and Springer 2008</rights><rights>The Botanical Society of Japan and Springer 2009</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c513t-e5c0336a0ba58c8914c46cf4e3387af7bf89354564e9f2c19a42121a4a486a853</citedby><cites>FETCH-LOGICAL-c513t-e5c0336a0ba58c8914c46cf4e3387af7bf89354564e9f2c19a42121a4a486a853</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s10265-008-0192-6$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s10265-008-0192-6$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/19018609$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Sungkaew, S.(Kasetsart Univ., Bangkok (Thailand))</creatorcontrib><creatorcontrib>Stapleton, C.M.A</creatorcontrib><creatorcontrib>Salamin, N</creatorcontrib><creatorcontrib>Hodkinson, T.R</creatorcontrib><title>Non-monophyly of the woody bamboos (Bambuseae; Poaceae): A multi-gene region phylogenetic analysis of Bambusoideae s.s</title><title>Journal of plant research</title><addtitle>J Plant Res</addtitle><addtitle>J Plant Res</addtitle><description>The taxonomy of Bambusoideae is in a state of flux and phylogenetic studies are required to help resolve systematic issues. Over 60 taxa, representing all subtribes of Bambuseae and related non-bambusoid grasses were sampled. A combined analysis of five plastid DNA regions, trnL intron, trnL-F intergenic spacer, atpB-rbcL intergenic spacer, rps16 intron, and matK, was used to study the phylogenetic relationships among the bamboos in general and the woody bamboos in particular. Within the BEP clade (Bambusoideae s.s., Ehrhartoideae, Pooideae), Pooideae were resolved as sister to Bambusoideae s.s. Tribe Bambuseae, the woody bamboos, as currently recognized were not monophyletic because Olyreae, the herbaceous bamboos, were sister to tropical Bambuseae. Temperate Bambuseae were sister to the group consisting of tropical Bambuseae and Olyreae. Thus, the temperate Bambuseae would be better treated as their own tribe Arundinarieae than as a subgroup of Bambuseae. Within the tropical Bambuseae, neotropical Bambuseae were sister to the palaeotropical and Austral Bambuseae. In addition, Melocanninae were found to be sister to the remaining palaeotropical and Austral Bambuseae. We discuss phylogenetic and morphological patterns of diversification and interpret them in a biogeographic context.</description><subject>ADN</subject><subject>Bamboo</subject><subject>Bambusoideae</subject><subject>BIOLOGIA MOLECULAR</subject><subject>BIOLOGIE MOLECULAIRE</subject><subject>Biomedical and Life Sciences</subject><subject>CLASIFICACION</subject><subject>CLASSIFICATION</subject><subject>Demography</subject><subject>DNA</subject><subject>DNA, Plant - genetics</subject><subject>FILOGENIA</subject><subject>GENETIC MARKERS</subject><subject>Genetics</subject><subject>Life Sciences</subject><subject>MARCADORES GENETICOS</subject><subject>MARQUEUR GENETIQUE</subject><subject>METHODE STATISTIQUE</subject><subject>METODOS ESTADISTICOS</subject><subject>MOLECULAR BIOLOGY</subject><subject>Multigene Family - genetics</subject><subject>NUCLEOTIDE SEQUENCE</subject><subject>PCR</subject><subject>PHYLOGENIE</subject><subject>PHYLOGENY</subject><subject>Plant Biochemistry</subject><subject>Plant biology</subject><subject>Plant Ecology</subject><subject>Plant Physiology</subject><subject>Plant Sciences</subject><subject>POACEAE</subject><subject>Poaceae - 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Academic</collection><jtitle>Journal of plant research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Sungkaew, S.(Kasetsart Univ., Bangkok (Thailand))</au><au>Stapleton, C.M.A</au><au>Salamin, N</au><au>Hodkinson, T.R</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Non-monophyly of the woody bamboos (Bambuseae; Poaceae): A multi-gene region phylogenetic analysis of Bambusoideae s.s</atitle><jtitle>Journal of plant research</jtitle><stitle>J Plant Res</stitle><addtitle>J Plant Res</addtitle><date>2009-01-01</date><risdate>2009</risdate><volume>122</volume><issue>1</issue><spage>95</spage><epage>108</epage><pages>95-108</pages><issn>0918-9440</issn><eissn>1618-0860</eissn><abstract>The taxonomy of Bambusoideae is in a state of flux and phylogenetic studies are required to help resolve systematic issues. Over 60 taxa, representing all subtribes of Bambuseae and related non-bambusoid grasses were sampled. A combined analysis of five plastid DNA regions, trnL intron, trnL-F intergenic spacer, atpB-rbcL intergenic spacer, rps16 intron, and matK, was used to study the phylogenetic relationships among the bamboos in general and the woody bamboos in particular. Within the BEP clade (Bambusoideae s.s., Ehrhartoideae, Pooideae), Pooideae were resolved as sister to Bambusoideae s.s. Tribe Bambuseae, the woody bamboos, as currently recognized were not monophyletic because Olyreae, the herbaceous bamboos, were sister to tropical Bambuseae. Temperate Bambuseae were sister to the group consisting of tropical Bambuseae and Olyreae. Thus, the temperate Bambuseae would be better treated as their own tribe Arundinarieae than as a subgroup of Bambuseae. Within the tropical Bambuseae, neotropical Bambuseae were sister to the palaeotropical and Austral Bambuseae. In addition, Melocanninae were found to be sister to the remaining palaeotropical and Austral Bambuseae. We discuss phylogenetic and morphological patterns of diversification and interpret them in a biogeographic context.</abstract><cop>Japan</cop><pub>Springer Japan</pub><pmid>19018609</pmid><doi>10.1007/s10265-008-0192-6</doi><tpages>14</tpages></addata></record> |
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| ispartof | Journal of plant research, 2009-01, Vol.122 (1), p.95-108 |
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| subjects | ADN Bamboo Bambusoideae BIOLOGIA MOLECULAR BIOLOGIE MOLECULAIRE Biomedical and Life Sciences CLASIFICACION CLASSIFICATION Demography DNA DNA, Plant - genetics FILOGENIA GENETIC MARKERS Genetics Life Sciences MARCADORES GENETICOS MARQUEUR GENETIQUE METHODE STATISTIQUE METODOS ESTADISTICOS MOLECULAR BIOLOGY Multigene Family - genetics NUCLEOTIDE SEQUENCE PCR PHYLOGENIE PHYLOGENY Plant Biochemistry Plant biology Plant Ecology Plant Physiology Plant Sciences POACEAE Poaceae - classification Poaceae - genetics Regular Paper SECUENCIA NUCLEOTIDICA SEQUENCE NUCLEOTIDIQUE STATISTICAL METHODS Taxonomy |
| title | Non-monophyly of the woody bamboos (Bambuseae; Poaceae): A multi-gene region phylogenetic analysis of Bambusoideae s.s |
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