Evidence of recombination in a new isolate of foot-and-mouth disease virus serotype Asia 1
Phylogenetic analysis of the nucleotide sequence of VP1 revealed that a new isolate of foot-and-mouth disease virus (FMDV) serotype Asia 1 identified in Mongolia in 2005 was related to Chinese and Russian strains isolated during the same year. In this study, these strains were defined as East Asian...
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| Veröffentlicht in: | Virus research 2009, Vol.139 (1), p.117-121 |
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| creator | Lee, Kwang-Nyeong Oem, Jae-Ku Park, Jong-Hyeon Kim, Su-Mi Lee, Seo-Yong Tserendorj, Sh Sodnomdarjaa, R. Joo, Yi-Seok Kim, Heebal |
| description | Phylogenetic analysis of the nucleotide sequence of
VP1 revealed that a new isolate of foot-and-mouth disease virus (FMDV) serotype Asia 1 identified in Mongolia in 2005 was related to Chinese and Russian strains isolated during the same year. In this study, these strains were defined as East Asian strains having a common geographical origin, and the complete genomic sequence of the Mongolian strain (As1/MOG/05) was determined and compared to other strains of serotype Asia 1. As1/MOG/05 showed 100% identity with an East Asian strain from China (As1/Qinghai/CHA/05) in terms of its
VP1 nucleotide sequence. However, the Mongolian strain has a four-amino acid extension in 3D that is missing from all other strains of serotype Asia 1, and which is not due to an insertion. A full genomic scan revealed that the Mongolian strain is closer to the East Asian strain As1/JS/CHA/05 than to all other strains of serotype Asia 1 in nearly all genomic regions. Within the narrow region of low similarity between the two sequences, As1/JS/CHA/05 was found to have a mosaic structure with a partial 2C fragment supposedly transferred from Hong Kong strain As1/HNK/CHA/05. The genomic mosaicism and extension detected in non-structural protein-coding regions in this study may be used to trace the origins and evolution of problematic strains of serotype Asia 1 that have arisen in East Asia since 2005. |
| doi_str_mv | 10.1016/j.virusres.2008.09.009 |
| format | Article |
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VP1 revealed that a new isolate of foot-and-mouth disease virus (FMDV) serotype Asia 1 identified in Mongolia in 2005 was related to Chinese and Russian strains isolated during the same year. In this study, these strains were defined as East Asian strains having a common geographical origin, and the complete genomic sequence of the Mongolian strain (As1/MOG/05) was determined and compared to other strains of serotype Asia 1. As1/MOG/05 showed 100% identity with an East Asian strain from China (As1/Qinghai/CHA/05) in terms of its
VP1 nucleotide sequence. However, the Mongolian strain has a four-amino acid extension in 3D that is missing from all other strains of serotype Asia 1, and which is not due to an insertion. A full genomic scan revealed that the Mongolian strain is closer to the East Asian strain As1/JS/CHA/05 than to all other strains of serotype Asia 1 in nearly all genomic regions. Within the narrow region of low similarity between the two sequences, As1/JS/CHA/05 was found to have a mosaic structure with a partial 2C fragment supposedly transferred from Hong Kong strain As1/HNK/CHA/05. The genomic mosaicism and extension detected in non-structural protein-coding regions in this study may be used to trace the origins and evolution of problematic strains of serotype Asia 1 that have arisen in East Asia since 2005.</description><identifier>ISSN: 0168-1702</identifier><identifier>EISSN: 1872-7492</identifier><identifier>DOI: 10.1016/j.virusres.2008.09.009</identifier><identifier>PMID: 18977402</identifier><language>eng</language><publisher>Netherlands: Elsevier B.V</publisher><subject>Animals ; Asia ; Asia 1 ; Base Sequence ; Cattle ; Cattle Diseases - virology ; China ; Foot-and-mouth disease ; Foot-and-Mouth Disease - virology ; Foot-and-mouth disease virus ; Foot-and-Mouth Disease Virus - classification ; Foot-and-Mouth Disease Virus - genetics ; Foot-and-Mouth Disease Virus - immunology ; Foot-and-Mouth Disease Virus - isolation & purification ; Genetic Variation ; Genome, Viral ; Molecular Sequence Data ; Mongolia ; Phylogeny ; Recombination ; Recombination, Genetic ; RNA, Viral - chemistry ; RNA, Viral - genetics ; Sequence Alignment ; Serotyping</subject><ispartof>Virus research, 2009, Vol.139 (1), p.117-121</ispartof><rights>2008 Elsevier B.V.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c397t-2ccb99fa707a84e2c42484baf6e72ad2f179544180b096c321d7cd9e5bd5e6f63</citedby><cites>FETCH-LOGICAL-c397t-2ccb99fa707a84e2c42484baf6e72ad2f179544180b096c321d7cd9e5bd5e6f63</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.virusres.2008.09.009$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,780,784,3550,4024,27923,27924,27925,45995</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/18977402$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Lee, Kwang-Nyeong</creatorcontrib><creatorcontrib>Oem, Jae-Ku</creatorcontrib><creatorcontrib>Park, Jong-Hyeon</creatorcontrib><creatorcontrib>Kim, Su-Mi</creatorcontrib><creatorcontrib>Lee, Seo-Yong</creatorcontrib><creatorcontrib>Tserendorj, Sh</creatorcontrib><creatorcontrib>Sodnomdarjaa, R.</creatorcontrib><creatorcontrib>Joo, Yi-Seok</creatorcontrib><creatorcontrib>Kim, Heebal</creatorcontrib><title>Evidence of recombination in a new isolate of foot-and-mouth disease virus serotype Asia 1</title><title>Virus research</title><addtitle>Virus Res</addtitle><description>Phylogenetic analysis of the nucleotide sequence of
VP1 revealed that a new isolate of foot-and-mouth disease virus (FMDV) serotype Asia 1 identified in Mongolia in 2005 was related to Chinese and Russian strains isolated during the same year. In this study, these strains were defined as East Asian strains having a common geographical origin, and the complete genomic sequence of the Mongolian strain (As1/MOG/05) was determined and compared to other strains of serotype Asia 1. As1/MOG/05 showed 100% identity with an East Asian strain from China (As1/Qinghai/CHA/05) in terms of its
VP1 nucleotide sequence. However, the Mongolian strain has a four-amino acid extension in 3D that is missing from all other strains of serotype Asia 1, and which is not due to an insertion. A full genomic scan revealed that the Mongolian strain is closer to the East Asian strain As1/JS/CHA/05 than to all other strains of serotype Asia 1 in nearly all genomic regions. Within the narrow region of low similarity between the two sequences, As1/JS/CHA/05 was found to have a mosaic structure with a partial 2C fragment supposedly transferred from Hong Kong strain As1/HNK/CHA/05. The genomic mosaicism and extension detected in non-structural protein-coding regions in this study may be used to trace the origins and evolution of problematic strains of serotype Asia 1 that have arisen in East Asia since 2005.</description><subject>Animals</subject><subject>Asia</subject><subject>Asia 1</subject><subject>Base Sequence</subject><subject>Cattle</subject><subject>Cattle Diseases - virology</subject><subject>China</subject><subject>Foot-and-mouth disease</subject><subject>Foot-and-Mouth Disease - virology</subject><subject>Foot-and-mouth disease virus</subject><subject>Foot-and-Mouth Disease Virus - classification</subject><subject>Foot-and-Mouth Disease Virus - genetics</subject><subject>Foot-and-Mouth Disease Virus - immunology</subject><subject>Foot-and-Mouth Disease Virus - isolation & purification</subject><subject>Genetic Variation</subject><subject>Genome, Viral</subject><subject>Molecular Sequence Data</subject><subject>Mongolia</subject><subject>Phylogeny</subject><subject>Recombination</subject><subject>Recombination, Genetic</subject><subject>RNA, Viral - chemistry</subject><subject>RNA, Viral - genetics</subject><subject>Sequence Alignment</subject><subject>Serotyping</subject><issn>0168-1702</issn><issn>1872-7492</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2009</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqF0D1v2zAQgGGiaNC4Tv6CwSmb1CNN82OrYThpgQBd2iULQZEnlIYluqTkwv--cuwiYyYu790RDyELBjUDJr_s6mPMY8lYag6gazA1gPlAZkwrXilh-Ecym0JdMQX8lnwuZQcAcqnkJ3LLtFFKAJ-Rl-0xBuw90tTSjD51TezdEFNPY08d7fEvjSXt3fBatCkNletD1aVx-E1DLOgK0te_0II5DacD0nWJjrI7ctO6fcH76zsnvx63PzffqucfT9836-fKL40aKu59Y0zrFCinBXIvuNCica1ExV3gLVNmJQTT0ICRfslZUD4YXDVhhbKVyzl5uOw95PRnxDLYLhaP-73rMY3FSqm0khreDTlwYRRjUygvoc-pTMatPeTYuXyyDOyZ3-7sf3575rdg7MQ_DS6uF8amw_A2dvWegq-XACeQY8Rsi49n_hAn_MGGFN-78Q8az5qo</recordid><startdate>2009</startdate><enddate>2009</enddate><creator>Lee, Kwang-Nyeong</creator><creator>Oem, Jae-Ku</creator><creator>Park, Jong-Hyeon</creator><creator>Kim, Su-Mi</creator><creator>Lee, Seo-Yong</creator><creator>Tserendorj, Sh</creator><creator>Sodnomdarjaa, R.</creator><creator>Joo, Yi-Seok</creator><creator>Kim, Heebal</creator><general>Elsevier B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7U9</scope><scope>8FD</scope><scope>FR3</scope><scope>H94</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>2009</creationdate><title>Evidence of recombination in a new isolate of foot-and-mouth disease virus serotype Asia 1</title><author>Lee, Kwang-Nyeong ; Oem, Jae-Ku ; Park, Jong-Hyeon ; Kim, Su-Mi ; Lee, Seo-Yong ; Tserendorj, Sh ; Sodnomdarjaa, R. ; Joo, Yi-Seok ; Kim, Heebal</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c397t-2ccb99fa707a84e2c42484baf6e72ad2f179544180b096c321d7cd9e5bd5e6f63</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2009</creationdate><topic>Animals</topic><topic>Asia</topic><topic>Asia 1</topic><topic>Base Sequence</topic><topic>Cattle</topic><topic>Cattle Diseases - virology</topic><topic>China</topic><topic>Foot-and-mouth disease</topic><topic>Foot-and-Mouth Disease - virology</topic><topic>Foot-and-mouth disease virus</topic><topic>Foot-and-Mouth Disease Virus - classification</topic><topic>Foot-and-Mouth Disease Virus - genetics</topic><topic>Foot-and-Mouth Disease Virus - immunology</topic><topic>Foot-and-Mouth Disease Virus - isolation & purification</topic><topic>Genetic Variation</topic><topic>Genome, Viral</topic><topic>Molecular Sequence Data</topic><topic>Mongolia</topic><topic>Phylogeny</topic><topic>Recombination</topic><topic>Recombination, Genetic</topic><topic>RNA, Viral - chemistry</topic><topic>RNA, Viral - genetics</topic><topic>Sequence Alignment</topic><topic>Serotyping</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Lee, Kwang-Nyeong</creatorcontrib><creatorcontrib>Oem, Jae-Ku</creatorcontrib><creatorcontrib>Park, Jong-Hyeon</creatorcontrib><creatorcontrib>Kim, Su-Mi</creatorcontrib><creatorcontrib>Lee, Seo-Yong</creatorcontrib><creatorcontrib>Tserendorj, Sh</creatorcontrib><creatorcontrib>Sodnomdarjaa, R.</creatorcontrib><creatorcontrib>Joo, Yi-Seok</creatorcontrib><creatorcontrib>Kim, Heebal</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Virus research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Lee, Kwang-Nyeong</au><au>Oem, Jae-Ku</au><au>Park, Jong-Hyeon</au><au>Kim, Su-Mi</au><au>Lee, Seo-Yong</au><au>Tserendorj, Sh</au><au>Sodnomdarjaa, R.</au><au>Joo, Yi-Seok</au><au>Kim, Heebal</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Evidence of recombination in a new isolate of foot-and-mouth disease virus serotype Asia 1</atitle><jtitle>Virus research</jtitle><addtitle>Virus Res</addtitle><date>2009</date><risdate>2009</risdate><volume>139</volume><issue>1</issue><spage>117</spage><epage>121</epage><pages>117-121</pages><issn>0168-1702</issn><eissn>1872-7492</eissn><abstract>Phylogenetic analysis of the nucleotide sequence of
VP1 revealed that a new isolate of foot-and-mouth disease virus (FMDV) serotype Asia 1 identified in Mongolia in 2005 was related to Chinese and Russian strains isolated during the same year. In this study, these strains were defined as East Asian strains having a common geographical origin, and the complete genomic sequence of the Mongolian strain (As1/MOG/05) was determined and compared to other strains of serotype Asia 1. As1/MOG/05 showed 100% identity with an East Asian strain from China (As1/Qinghai/CHA/05) in terms of its
VP1 nucleotide sequence. However, the Mongolian strain has a four-amino acid extension in 3D that is missing from all other strains of serotype Asia 1, and which is not due to an insertion. A full genomic scan revealed that the Mongolian strain is closer to the East Asian strain As1/JS/CHA/05 than to all other strains of serotype Asia 1 in nearly all genomic regions. Within the narrow region of low similarity between the two sequences, As1/JS/CHA/05 was found to have a mosaic structure with a partial 2C fragment supposedly transferred from Hong Kong strain As1/HNK/CHA/05. The genomic mosaicism and extension detected in non-structural protein-coding regions in this study may be used to trace the origins and evolution of problematic strains of serotype Asia 1 that have arisen in East Asia since 2005.</abstract><cop>Netherlands</cop><pub>Elsevier B.V</pub><pmid>18977402</pmid><doi>10.1016/j.virusres.2008.09.009</doi><tpages>5</tpages></addata></record> |
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| ispartof | Virus research, 2009, Vol.139 (1), p.117-121 |
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| subjects | Animals Asia Asia 1 Base Sequence Cattle Cattle Diseases - virology China Foot-and-mouth disease Foot-and-Mouth Disease - virology Foot-and-mouth disease virus Foot-and-Mouth Disease Virus - classification Foot-and-Mouth Disease Virus - genetics Foot-and-Mouth Disease Virus - immunology Foot-and-Mouth Disease Virus - isolation & purification Genetic Variation Genome, Viral Molecular Sequence Data Mongolia Phylogeny Recombination Recombination, Genetic RNA, Viral - chemistry RNA, Viral - genetics Sequence Alignment Serotyping |
| title | Evidence of recombination in a new isolate of foot-and-mouth disease virus serotype Asia 1 |
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