Global transcription profiling reveals multiple sugar signal transduction mechanisms in Arabidopsis
Complex and interconnected signaling networks allow organisms to control cell division, growth, differentiation, or programmed cell death in response to metabolic and environmental cues. In plants, it is known that sugar and nitrogen are critical nutrient signals; however, our understanding of the m...
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| Veröffentlicht in: | The Plant cell 2004-08, Vol.16 (8), p.2128-2150 |
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| creator | Price, J Laxmi, A St. Martin, S.K Jang, J.C |
| description | Complex and interconnected signaling networks allow organisms to control cell division, growth, differentiation, or programmed cell death in response to metabolic and environmental cues. In plants, it is known that sugar and nitrogen are critical nutrient signals; however, our understanding of the molecular mechanisms underlying nutrient signal transduction is very limited. To begin unraveling complex sugar signaling networks in plants, DNA microarray analysis was used to determine the effects of glucose and inorganic nitrogen source on gene expression on a global scale in Arabidopsis thaliana. In whole seedling tissue, glucose is a more potent signal in regulating transcription than inorganic nitrogen. In fact, other than genes associated with nitrate assimilation, glucose had a greater effect in regulating nitrogen metabolic genes than nitrogen itself. Glucose also regulated a broader range of genes, including genes associated with carbohydrate metabolism, signal transduction, and metabolite transport. In addition, a large number of stress responsive genes were also induced by glucose, indicating a role of sugar in environmental responses. Cluster analysis revealed significant interaction between glucose and nitrogen in regulating gene expression because glucose can modulate the effects of nitrogen and vise versa. Intriguingly, cycloheximide treatment appeared to disrupt glucose induction more than glucose repression, suggesting that de novo protein synthesis is an intermediary event required before most glucose induction can occur. Cross talk between sugar and ethylene signaling may take place on the transcriptional level because several ethylene biosynthetic and signal transduction genes are repressed by glucose, and the repression is largely unaffected by cycloheximide. Collectively, our global expression data strongly support the idea that glucose and inorganic nitrogen act as both metabolites and signaling molecules. |
| doi_str_mv | 10.1105/tpc.104.022616 |
| format | Article |
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In plants, it is known that sugar and nitrogen are critical nutrient signals; however, our understanding of the molecular mechanisms underlying nutrient signal transduction is very limited. To begin unraveling complex sugar signaling networks in plants, DNA microarray analysis was used to determine the effects of glucose and inorganic nitrogen source on gene expression on a global scale in Arabidopsis thaliana. In whole seedling tissue, glucose is a more potent signal in regulating transcription than inorganic nitrogen. In fact, other than genes associated with nitrate assimilation, glucose had a greater effect in regulating nitrogen metabolic genes than nitrogen itself. Glucose also regulated a broader range of genes, including genes associated with carbohydrate metabolism, signal transduction, and metabolite transport. In addition, a large number of stress responsive genes were also induced by glucose, indicating a role of sugar in environmental responses. Cluster analysis revealed significant interaction between glucose and nitrogen in regulating gene expression because glucose can modulate the effects of nitrogen and vise versa. Intriguingly, cycloheximide treatment appeared to disrupt glucose induction more than glucose repression, suggesting that de novo protein synthesis is an intermediary event required before most glucose induction can occur. Cross talk between sugar and ethylene signaling may take place on the transcriptional level because several ethylene biosynthetic and signal transduction genes are repressed by glucose, and the repression is largely unaffected by cycloheximide. Collectively, our global expression data strongly support the idea that glucose and inorganic nitrogen act as both metabolites and signaling molecules.</description><identifier>ISSN: 1040-4651</identifier><identifier>ISSN: 1532-298X</identifier><identifier>EISSN: 1532-298X</identifier><identifier>DOI: 10.1105/tpc.104.022616</identifier><identifier>PMID: 15273295</identifier><language>eng</language><publisher>United States: American Society of Plant Biologists</publisher><subject>Arabidopsis - genetics ; Arabidopsis - physiology ; Arabidopsis thaliana ; Biosynthesis ; Carbohydrate Metabolism ; Cluster Analysis ; Ethylenes - metabolism ; gene downregulation ; Gene expression ; Gene Expression Profiling ; Gene expression regulation ; Gene Expression Regulation, Plant ; gene induction ; gene upregulation ; Genes ; Genes, Plant ; Glucose ; Glucose - metabolism ; Membrane Transport Proteins - metabolism ; messenger RNA ; Metabolites ; microarray technology ; Nitrates ; Nitrogen ; Nitrogen - metabolism ; nutrient availability ; Nutrients ; Oligonucleotide Array Sequence Analysis ; Plant cells ; Plant Growth Regulators - metabolism ; Plants ; Protein synthesis ; Reproducibility of Results ; RNA - genetics ; RNA - metabolism ; Seedlings ; Signal Transduction ; Starches ; Sugar ; Sugars ; transcription (genetics) ; transcription factors ; Transcription Factors - metabolism ; Transcription, Genetic</subject><ispartof>The Plant cell, 2004-08, Vol.16 (8), p.2128-2150</ispartof><rights>Copyright 2004 American Society of Plant Biologists</rights><rights>Copyright American Society of Plant Physiologists Aug 2004</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c465t-a5a2961e0c54c868b9fcb8a16f12385c9a8fc0a983dfd3a6ce7ecaa37e9217913</citedby><cites>FETCH-LOGICAL-c465t-a5a2961e0c54c868b9fcb8a16f12385c9a8fc0a983dfd3a6ce7ecaa37e9217913</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/3872331$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/3872331$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>314,780,784,803,27924,27925,58017,58250</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/15273295$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Price, J</creatorcontrib><creatorcontrib>Laxmi, A</creatorcontrib><creatorcontrib>St. Martin, S.K</creatorcontrib><creatorcontrib>Jang, J.C</creatorcontrib><title>Global transcription profiling reveals multiple sugar signal transduction mechanisms in Arabidopsis</title><title>The Plant cell</title><addtitle>Plant Cell</addtitle><description>Complex and interconnected signaling networks allow organisms to control cell division, growth, differentiation, or programmed cell death in response to metabolic and environmental cues. In plants, it is known that sugar and nitrogen are critical nutrient signals; however, our understanding of the molecular mechanisms underlying nutrient signal transduction is very limited. To begin unraveling complex sugar signaling networks in plants, DNA microarray analysis was used to determine the effects of glucose and inorganic nitrogen source on gene expression on a global scale in Arabidopsis thaliana. In whole seedling tissue, glucose is a more potent signal in regulating transcription than inorganic nitrogen. In fact, other than genes associated with nitrate assimilation, glucose had a greater effect in regulating nitrogen metabolic genes than nitrogen itself. Glucose also regulated a broader range of genes, including genes associated with carbohydrate metabolism, signal transduction, and metabolite transport. In addition, a large number of stress responsive genes were also induced by glucose, indicating a role of sugar in environmental responses. Cluster analysis revealed significant interaction between glucose and nitrogen in regulating gene expression because glucose can modulate the effects of nitrogen and vise versa. Intriguingly, cycloheximide treatment appeared to disrupt glucose induction more than glucose repression, suggesting that de novo protein synthesis is an intermediary event required before most glucose induction can occur. Cross talk between sugar and ethylene signaling may take place on the transcriptional level because several ethylene biosynthetic and signal transduction genes are repressed by glucose, and the repression is largely unaffected by cycloheximide. Collectively, our global expression data strongly support the idea that glucose and inorganic nitrogen act as both metabolites and signaling molecules.</description><subject>Arabidopsis - genetics</subject><subject>Arabidopsis - physiology</subject><subject>Arabidopsis thaliana</subject><subject>Biosynthesis</subject><subject>Carbohydrate Metabolism</subject><subject>Cluster Analysis</subject><subject>Ethylenes - metabolism</subject><subject>gene downregulation</subject><subject>Gene expression</subject><subject>Gene Expression Profiling</subject><subject>Gene expression regulation</subject><subject>Gene Expression Regulation, Plant</subject><subject>gene induction</subject><subject>gene upregulation</subject><subject>Genes</subject><subject>Genes, Plant</subject><subject>Glucose</subject><subject>Glucose - metabolism</subject><subject>Membrane Transport Proteins - metabolism</subject><subject>messenger RNA</subject><subject>Metabolites</subject><subject>microarray technology</subject><subject>Nitrates</subject><subject>Nitrogen</subject><subject>Nitrogen - metabolism</subject><subject>nutrient availability</subject><subject>Nutrients</subject><subject>Oligonucleotide Array Sequence Analysis</subject><subject>Plant cells</subject><subject>Plant Growth Regulators - metabolism</subject><subject>Plants</subject><subject>Protein synthesis</subject><subject>Reproducibility of Results</subject><subject>RNA - genetics</subject><subject>RNA - metabolism</subject><subject>Seedlings</subject><subject>Signal Transduction</subject><subject>Starches</subject><subject>Sugar</subject><subject>Sugars</subject><subject>transcription (genetics)</subject><subject>transcription factors</subject><subject>Transcription Factors - metabolism</subject><subject>Transcription, Genetic</subject><issn>1040-4651</issn><issn>1532-298X</issn><issn>1532-298X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2004</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNqFkc2L1TAUxYMozoduXYkWF-76zM1Xk-Uw6Iww4EIH3IU0TZ95tE3NbQf8782zTwU3ru6F-zuHeziEvAC6A6Dy3TL7HVCxo4wpUI_IOUjOamb018dlp4LWQkk4IxeIB0opNGCekjOQrOHMyHPib4bUuqFaspvQ5zgvMU3VnFMfhzjtqxweghuwGtdhifMQKlz3LlcY99NvVbf6X6Ix-G9uijhiFafqKrs2dmnGiM_Ik754hOeneUnuP7z_cn1b3326-Xh9dVf78uNSO-mYURCol8JrpVvT-1Y7UD0wrqU3TveeOqN513fcKR-a4J3jTTAMGgP8krzdfMv739eAix0j-jAMbgppRatUo7Tm4r8gaMq4pEfwzT_gIa25JEfLQDdKCaMKtNsgnxNiDr2dcxxd_mGB2mNJtpRUdmG3korg1cl1bcfQ_cVPrRTg5QYccEn5z53rhnF-zPl6O_cuWbfPEe39Z0aBU2qEMNTwnxn-obg</recordid><startdate>20040801</startdate><enddate>20040801</enddate><creator>Price, J</creator><creator>Laxmi, A</creator><creator>St. Martin, S.K</creator><creator>Jang, J.C</creator><general>American Society of Plant Biologists</general><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>4T-</scope><scope>7QO</scope><scope>7TM</scope><scope>7X2</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>88I</scope><scope>8AF</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0K</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>RC3</scope><scope>S0X</scope><scope>7X8</scope></search><sort><creationdate>20040801</creationdate><title>Global transcription profiling reveals multiple sugar signal transduction mechanisms in Arabidopsis</title><author>Price, J ; Laxmi, A ; St. Martin, S.K ; Jang, J.C</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c465t-a5a2961e0c54c868b9fcb8a16f12385c9a8fc0a983dfd3a6ce7ecaa37e9217913</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2004</creationdate><topic>Arabidopsis - genetics</topic><topic>Arabidopsis - physiology</topic><topic>Arabidopsis thaliana</topic><topic>Biosynthesis</topic><topic>Carbohydrate Metabolism</topic><topic>Cluster Analysis</topic><topic>Ethylenes - metabolism</topic><topic>gene downregulation</topic><topic>Gene expression</topic><topic>Gene Expression Profiling</topic><topic>Gene expression regulation</topic><topic>Gene Expression Regulation, Plant</topic><topic>gene induction</topic><topic>gene upregulation</topic><topic>Genes</topic><topic>Genes, Plant</topic><topic>Glucose</topic><topic>Glucose - metabolism</topic><topic>Membrane Transport Proteins - metabolism</topic><topic>messenger RNA</topic><topic>Metabolites</topic><topic>microarray technology</topic><topic>Nitrates</topic><topic>Nitrogen</topic><topic>Nitrogen - metabolism</topic><topic>nutrient availability</topic><topic>Nutrients</topic><topic>Oligonucleotide Array Sequence Analysis</topic><topic>Plant cells</topic><topic>Plant Growth Regulators - metabolism</topic><topic>Plants</topic><topic>Protein synthesis</topic><topic>Reproducibility of Results</topic><topic>RNA - genetics</topic><topic>RNA - metabolism</topic><topic>Seedlings</topic><topic>Signal Transduction</topic><topic>Starches</topic><topic>Sugar</topic><topic>Sugars</topic><topic>transcription (genetics)</topic><topic>transcription factors</topic><topic>Transcription Factors - metabolism</topic><topic>Transcription, Genetic</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Price, J</creatorcontrib><creatorcontrib>Laxmi, A</creatorcontrib><creatorcontrib>St. Martin, S.K</creatorcontrib><creatorcontrib>Jang, J.C</creatorcontrib><collection>AGRIS</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Docstoc</collection><collection>Biotechnology Research Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Agricultural Science Collection</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Science Database (Alumni Edition)</collection><collection>STEM Database</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Agricultural Science Database</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Science Database</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><collection>SIRS Editorial</collection><collection>MEDLINE - Academic</collection><jtitle>The Plant cell</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Price, J</au><au>Laxmi, A</au><au>St. Martin, S.K</au><au>Jang, J.C</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Global transcription profiling reveals multiple sugar signal transduction mechanisms in Arabidopsis</atitle><jtitle>The Plant cell</jtitle><addtitle>Plant Cell</addtitle><date>2004-08-01</date><risdate>2004</risdate><volume>16</volume><issue>8</issue><spage>2128</spage><epage>2150</epage><pages>2128-2150</pages><issn>1040-4651</issn><issn>1532-298X</issn><eissn>1532-298X</eissn><abstract>Complex and interconnected signaling networks allow organisms to control cell division, growth, differentiation, or programmed cell death in response to metabolic and environmental cues. In plants, it is known that sugar and nitrogen are critical nutrient signals; however, our understanding of the molecular mechanisms underlying nutrient signal transduction is very limited. To begin unraveling complex sugar signaling networks in plants, DNA microarray analysis was used to determine the effects of glucose and inorganic nitrogen source on gene expression on a global scale in Arabidopsis thaliana. In whole seedling tissue, glucose is a more potent signal in regulating transcription than inorganic nitrogen. In fact, other than genes associated with nitrate assimilation, glucose had a greater effect in regulating nitrogen metabolic genes than nitrogen itself. Glucose also regulated a broader range of genes, including genes associated with carbohydrate metabolism, signal transduction, and metabolite transport. In addition, a large number of stress responsive genes were also induced by glucose, indicating a role of sugar in environmental responses. Cluster analysis revealed significant interaction between glucose and nitrogen in regulating gene expression because glucose can modulate the effects of nitrogen and vise versa. Intriguingly, cycloheximide treatment appeared to disrupt glucose induction more than glucose repression, suggesting that de novo protein synthesis is an intermediary event required before most glucose induction can occur. Cross talk between sugar and ethylene signaling may take place on the transcriptional level because several ethylene biosynthetic and signal transduction genes are repressed by glucose, and the repression is largely unaffected by cycloheximide. Collectively, our global expression data strongly support the idea that glucose and inorganic nitrogen act as both metabolites and signaling molecules.</abstract><cop>United States</cop><pub>American Society of Plant Biologists</pub><pmid>15273295</pmid><doi>10.1105/tpc.104.022616</doi><tpages>23</tpages><oa>free_for_read</oa></addata></record> |
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| source | MEDLINE; JSTOR Archive Collection A-Z Listing; Oxford University Press Journals All Titles (1996-Current); EZB-FREE-00999 freely available EZB journals |
| subjects | Arabidopsis - genetics Arabidopsis - physiology Arabidopsis thaliana Biosynthesis Carbohydrate Metabolism Cluster Analysis Ethylenes - metabolism gene downregulation Gene expression Gene Expression Profiling Gene expression regulation Gene Expression Regulation, Plant gene induction gene upregulation Genes Genes, Plant Glucose Glucose - metabolism Membrane Transport Proteins - metabolism messenger RNA Metabolites microarray technology Nitrates Nitrogen Nitrogen - metabolism nutrient availability Nutrients Oligonucleotide Array Sequence Analysis Plant cells Plant Growth Regulators - metabolism Plants Protein synthesis Reproducibility of Results RNA - genetics RNA - metabolism Seedlings Signal Transduction Starches Sugar Sugars transcription (genetics) transcription factors Transcription Factors - metabolism Transcription, Genetic |
| title | Global transcription profiling reveals multiple sugar signal transduction mechanisms in Arabidopsis |
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