Denaturing-HPLC-Based Assay for Detection of ABL Mutations in Chronic Myeloid Leukemia Patients Resistant to Imatinib

Despite the efficacy of the BCR-ABL tyrosine kinase inhibitor Imatinib mesylate for the treatment of chronic myeloid leukemia (CML), resistance has been observed in a proportion of cases, especially those with advanced stages of the disease. Point mutations within the ABL kinase domain are emerging...

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Veröffentlicht in:Clinical chemistry (Baltimore, Md.) Md.), 2004-07, Vol.50 (7), p.1205-1213
Hauptverfasser: Soverini, Simona, Martinelli, Giovanni, Amabile, Marilina, Poerio, Angela, Bianchini, Michele, Rosti, Gianantonio, Pane, Fabrizio, Saglio, Giuseppe, Baccarani, Michele
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container_end_page 1213
container_issue 7
container_start_page 1205
container_title Clinical chemistry (Baltimore, Md.)
container_volume 50
creator Soverini, Simona
Martinelli, Giovanni
Amabile, Marilina
Poerio, Angela
Bianchini, Michele
Rosti, Gianantonio
Pane, Fabrizio
Saglio, Giuseppe
Baccarani, Michele
description Despite the efficacy of the BCR-ABL tyrosine kinase inhibitor Imatinib mesylate for the treatment of chronic myeloid leukemia (CML), resistance has been observed in a proportion of cases, especially those with advanced stages of the disease. Point mutations within the ABL kinase domain are emerging as the most frequent mechanism for reactivation of kinase activity within the leukemic clone. We developed a denaturing-HPLC (D-HPLC)-based assay for screening for ABL point mutations. For each sample, two partially overlapping fragments of 393 and 482 bp corresponding to the kinase domain were amplified by nested reverse transcription-PCR and analyzed under selected temperature and acetonitrile gradient conditions. Fifty-one bone marrow and/or peripheral blood specimens from 27 CML patients who showed cytogenetic resistance to Imatinib were screened in parallel by D-HPLC and by direct sequencing. In 12 of 27 (44%) patients, D-HPLC showed an abnormal elution profile suggesting the presence of a nucleotide change. Direct sequencing confirmed the presence of a point mutation in all cases. Conversely, all samples scored as wild type by D-HPLC showed no evidence of mutations by direct sequencing. In two cases, novel amino acid substitutions at codons already known for being hot-spots of mutation were identified (F311I and E355D). The proposed D-HPLC-based assay is highly specific and at least as sensitive as sequencing; with respect to the latter, it provides a much faster and less expensive semiautomated system for mutational screening. It may therefore potentially be a valuable tool for regular, large-scale testing of patients undergoing Imatinib treatment.
doi_str_mv 10.1373/clinchem.2004.031112
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Point mutations within the ABL kinase domain are emerging as the most frequent mechanism for reactivation of kinase activity within the leukemic clone. We developed a denaturing-HPLC (D-HPLC)-based assay for screening for ABL point mutations. For each sample, two partially overlapping fragments of 393 and 482 bp corresponding to the kinase domain were amplified by nested reverse transcription-PCR and analyzed under selected temperature and acetonitrile gradient conditions. Fifty-one bone marrow and/or peripheral blood specimens from 27 CML patients who showed cytogenetic resistance to Imatinib were screened in parallel by D-HPLC and by direct sequencing. In 12 of 27 (44%) patients, D-HPLC showed an abnormal elution profile suggesting the presence of a nucleotide change. Direct sequencing confirmed the presence of a point mutation in all cases. Conversely, all samples scored as wild type by D-HPLC showed no evidence of mutations by direct sequencing. 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subjects Amino acids
Analytical, structural and metabolic biochemistry
Antineoplastic Agents - therapeutic use
Benzamides
Biological and medical sciences
Bone marrow
Chromatography, High Pressure Liquid - methods
DNA Mutational Analysis
Drug Resistance, Neoplasm
Fundamental and applied biological sciences. Psychology
Fusion Proteins, bcr-abl
Genes, abl
Hematologic and hematopoietic diseases
Humans
Imatinib Mesylate
Investigative techniques, diagnostic techniques (general aspects)
Leukemia
Leukemia, Myelogenous, Chronic, BCR-ABL Positive - drug therapy
Leukemia, Myelogenous, Chronic, BCR-ABL Positive - genetics
Leukemias. Malignant lymphomas. Malignant reticulosis. Myelofibrosis
Liquid chromatography
Medical sciences
Molecular biophysics
Mutation
Piperazines - therapeutic use
Point Mutation
Protein-Tyrosine Kinases - genetics
Pyrimidines - therapeutic use
Retrospective Studies
Reverse Transcriptase Polymerase Chain Reaction
Sensitivity and Specificity
title Denaturing-HPLC-Based Assay for Detection of ABL Mutations in Chronic Myeloid Leukemia Patients Resistant to Imatinib
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