Three-dimensional microarray platform applied to single nucleotide polymorphism analysis
Bio‐Strand, Inc., has developed a novel DNA microarray platform utilizing a three‐dimensional (3D) DNA format. DNA probes or polymerase chain reaction (PCR) products are spotted onto a thread‐like scaffold, which is then wound onto a cylindrical core. By wrapping the thread around the core, high eff...
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| Veröffentlicht in: | Biotechnology and bioengineering 2004-07, Vol.87 (1), p.99-103 |
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| container_title | Biotechnology and bioengineering |
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| creator | Stimpson, Donald I. Knepper, Sheila M. Shida, Miho Obata, Kimimichi Tajima, Hideji |
| description | Bio‐Strand, Inc., has developed a novel DNA microarray platform utilizing a three‐dimensional (3D) DNA format. DNA probes or polymerase chain reaction (PCR) products are spotted onto a thread‐like scaffold, which is then wound onto a cylindrical core. By wrapping the thread around the core, high efficiencies are achieved in sample analysis. Using allele‐specific oligo (ASO) competitive hybridization (with Cy5 fluorescently labeled sequences), hybridized arrays are visualized using a helium–neon (HeNe) laser and quantitated/scored. The method can readily detect single nucleotide differences. We demonstrate the use of this Bio‐Strand 3D array in the analysis of a single nucleotide polymorphism (SNP). © 2004 Wiley Periodicals, Inc. |
| doi_str_mv | 10.1002/bit.20087 |
| format | Article |
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Psychology</subject><subject>Humans</subject><subject>Lasers</subject><subject>microarray</subject><subject>Nylons - chemistry</subject><subject>Oligonucleotide Array Sequence Analysis - methods</subject><subject>Polymerase Chain Reaction</subject><subject>Polymorphism, Single Nucleotide</subject><subject>Sensitivity and Specificity</subject><subject>single nucleotide polymorphism (SNP)</subject><subject>strand</subject><issn>0006-3592</issn><issn>1097-0290</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2004</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqF0VFr1TAUB_AgirtOH_wCUgQHe-iW5LRp8zjHvBts-nJ1voWTNnWZaVOTFu23N9u96hDEpxD4nf8h-RPyktEjRik_1nY64pTW1SOyYlRWOeWSPiYrSqnIoZR8jzyL8TZdq1qIp2SPlZyxQsKKfN7cBGPy1vZmiNYP6LLeNsFjCLhko8Op86HPcBydNW02-Sza4Ysz2TA3zvjJtiYbvVt6H8YbG5NMEUu08Tl50qGL5sXu3Ccf351tTs_zyw_ri9OTy7wpS1rlDLBuOhCAEsHUpaQtp52oNW9RQ62ZEdTIFpAWiDxNcM0RO9CthEKDhn1ysM0dg_82mzip3sbGOIeD8XNUQogCeFX_F7KKc14WRYKv_4K3fg7pWVFxBpWAEnhCh1uU_irGYDo1BttjWBSj6q4UlUpR96Uk-2oXOOvetH_kroUE3uwAxgZdF3BobHzgUmsg74KOt-67dWb590b19mLza3W-nbBxMj9-T2D4qkQFVamu36_V9fl686m4AkXhJ_V5stI</recordid><startdate>20040705</startdate><enddate>20040705</enddate><creator>Stimpson, Donald I.</creator><creator>Knepper, Sheila M.</creator><creator>Shida, Miho</creator><creator>Obata, Kimimichi</creator><creator>Tajima, Hideji</creator><general>Wiley Subscription Services, Inc., A Wiley Company</general><general>Wiley</general><general>Wiley Subscription Services, Inc</general><scope>BSCLL</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QF</scope><scope>7QO</scope><scope>7QQ</scope><scope>7SC</scope><scope>7SE</scope><scope>7SP</scope><scope>7SR</scope><scope>7T7</scope><scope>7TA</scope><scope>7TB</scope><scope>7U5</scope><scope>8BQ</scope><scope>8FD</scope><scope>C1K</scope><scope>F28</scope><scope>FR3</scope><scope>H8D</scope><scope>H8G</scope><scope>JG9</scope><scope>JQ2</scope><scope>KR7</scope><scope>L7M</scope><scope>L~C</scope><scope>L~D</scope><scope>P64</scope><scope>7TM</scope><scope>7X8</scope></search><sort><creationdate>20040705</creationdate><title>Three-dimensional microarray platform applied to single nucleotide polymorphism analysis</title><author>Stimpson, Donald I. ; Knepper, Sheila M. ; Shida, Miho ; Obata, Kimimichi ; Tajima, Hideji</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c5507-13a8cf363a9a3e8590d20f68b2dab38b1e60e9d3a04aa25072b2aaf3bd934b3b3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2004</creationdate><topic>3D chip</topic><topic>Biological and medical sciences</topic><topic>Biotechnology</topic><topic>Carbocyanines - chemistry</topic><topic>Deoxyribonucleic acid</topic><topic>DNA</topic><topic>DNA - chemistry</topic><topic>DNA chip</topic><topic>DNA Probes - chemistry</topic><topic>Fundamental and applied biological sciences. 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Bioeng</addtitle><date>2004-07-05</date><risdate>2004</risdate><volume>87</volume><issue>1</issue><spage>99</spage><epage>103</epage><pages>99-103</pages><issn>0006-3592</issn><eissn>1097-0290</eissn><coden>BIBIAU</coden><abstract>Bio‐Strand, Inc., has developed a novel DNA microarray platform utilizing a three‐dimensional (3D) DNA format. DNA probes or polymerase chain reaction (PCR) products are spotted onto a thread‐like scaffold, which is then wound onto a cylindrical core. By wrapping the thread around the core, high efficiencies are achieved in sample analysis. Using allele‐specific oligo (ASO) competitive hybridization (with Cy5 fluorescently labeled sequences), hybridized arrays are visualized using a helium–neon (HeNe) laser and quantitated/scored. The method can readily detect single nucleotide differences. 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| ispartof | Biotechnology and bioengineering, 2004-07, Vol.87 (1), p.99-103 |
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| source | MEDLINE; Access via Wiley Online Library |
| subjects | 3D chip Biological and medical sciences Biotechnology Carbocyanines - chemistry Deoxyribonucleic acid DNA DNA - chemistry DNA chip DNA Probes - chemistry Fundamental and applied biological sciences. Psychology Humans Lasers microarray Nylons - chemistry Oligonucleotide Array Sequence Analysis - methods Polymerase Chain Reaction Polymorphism, Single Nucleotide Sensitivity and Specificity single nucleotide polymorphism (SNP) strand |
| title | Three-dimensional microarray platform applied to single nucleotide polymorphism analysis |
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