Study of interaction in dual-species biofilm of Candida glabrata and Klebsiella pneumoniae co-isolated from peripheral venous catheter using Raman characterization mapping and machine learning algorithms
Polymicrobial biofilm infections, especially associated with medical devices such as peripheral venous catheters, are challenging in clinical settings for treatment and management. In this study, we examined the mixed biofilm formed by Candida glabrata and Klebsiella pneumoniae, which were co-isolat...
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Veröffentlicht in: | Microbial pathogenesis 2025-02, Vol.199, p.107280, Article 107280 |
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description | Polymicrobial biofilm infections, especially associated with medical devices such as peripheral venous catheters, are challenging in clinical settings for treatment and management. In this study, we examined the mixed biofilm formed by Candida glabrata and Klebsiella pneumoniae, which were co-isolated from the same peripheral venous catheter. Our results revealed that C. glabrata can form mixed biofilms with K. pneumoniae in vitro on peripheral venous catheters and the bottom of microplate wells, as confirmed by scanning electron microscopy. Additionally, using Raman mapping, we showed the distribution of both species in mono- and dual-species biofilms and suggested the type of microbial interaction in this polymicrobial biofilm. Finally, with the assistance of appropriate machine learning (ML) algorithms, based on identified peaks of bacteria, yeast, catheter, and Microplate mapping spectra, we develop a dedicated Raman database to detect the presence of these elements in an unknown spectrum in the future.
•Candida glabrata formed mixed biofilms with Klebsiella pneumoniaein vitro, as confirmed by scanning electron microscopy.•The Raman microscopy mapping showed the distribution of both species in single and mixed biofilms.•Using AI tools, we developed a potential method to identify and quantify reference elements in unknown Raman spectra. |
doi_str_mv | 10.1016/j.micpath.2025.107280 |
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•Candida glabrata formed mixed biofilms with Klebsiella pneumoniaein vitro, as confirmed by scanning electron microscopy.•The Raman microscopy mapping showed the distribution of both species in single and mixed biofilms.•Using AI tools, we developed a potential method to identify and quantify reference elements in unknown Raman spectra.</description><identifier>ISSN: 0882-4010</identifier><identifier>ISSN: 1096-1208</identifier><identifier>EISSN: 1096-1208</identifier><identifier>DOI: 10.1016/j.micpath.2025.107280</identifier><identifier>PMID: 39761771</identifier><language>eng</language><publisher>England: Elsevier Ltd</publisher><subject>Algorithms ; Biofilms - growth & development ; Candida glabrata - isolation & purification ; Candida glabrata - physiology ; Catheter-Related Infections - microbiology ; Coinfection - microbiology ; Humans ; Klebsiella Infections - microbiology ; Klebsiella pneumoniae - isolation & purification ; Klebsiella pneumoniae - physiology ; Machine Learning ; Microbial Interactions ; Microscopy, Electron, Scanning ; Spectrum Analysis, Raman - methods</subject><ispartof>Microbial pathogenesis, 2025-02, Vol.199, p.107280, Article 107280</ispartof><rights>2025 Elsevier Ltd</rights><rights>Copyright © 2025 Elsevier Ltd. All rights reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c1941-68aa49b3ed97470ef60fe561b26c89d0bd272ac790dc2b56a2db4fcd66fcd4553</cites><orcidid>0000-0002-5314-1566 ; 0000-0002-6624-0029</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S0882401025000051$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,776,780,3537,27901,27902,65306</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/39761771$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Benahmed, Abdeselem</creatorcontrib><creatorcontrib>Seghir, Abdelfettah</creatorcontrib><creatorcontrib>Dergal, Fayçal</creatorcontrib><creatorcontrib>Chiali, Anisse</creatorcontrib><creatorcontrib>Boucherit-Otmani, Zahia</creatorcontrib><creatorcontrib>Ziani-Chérif, Chewki</creatorcontrib><title>Study of interaction in dual-species biofilm of Candida glabrata and Klebsiella pneumoniae co-isolated from peripheral venous catheter using Raman characterization mapping and machine learning algorithms</title><title>Microbial pathogenesis</title><addtitle>Microb Pathog</addtitle><description>Polymicrobial biofilm infections, especially associated with medical devices such as peripheral venous catheters, are challenging in clinical settings for treatment and management. In this study, we examined the mixed biofilm formed by Candida glabrata and Klebsiella pneumoniae, which were co-isolated from the same peripheral venous catheter. Our results revealed that C. glabrata can form mixed biofilms with K. pneumoniae in vitro on peripheral venous catheters and the bottom of microplate wells, as confirmed by scanning electron microscopy. Additionally, using Raman mapping, we showed the distribution of both species in mono- and dual-species biofilms and suggested the type of microbial interaction in this polymicrobial biofilm. Finally, with the assistance of appropriate machine learning (ML) algorithms, based on identified peaks of bacteria, yeast, catheter, and Microplate mapping spectra, we develop a dedicated Raman database to detect the presence of these elements in an unknown spectrum in the future.
•Candida glabrata formed mixed biofilms with Klebsiella pneumoniaein vitro, as confirmed by scanning electron microscopy.•The Raman microscopy mapping showed the distribution of both species in single and mixed biofilms.•Using AI tools, we developed a potential method to identify and quantify reference elements in unknown Raman spectra.</description><subject>Algorithms</subject><subject>Biofilms - growth & development</subject><subject>Candida glabrata - isolation & purification</subject><subject>Candida glabrata - physiology</subject><subject>Catheter-Related Infections - microbiology</subject><subject>Coinfection - microbiology</subject><subject>Humans</subject><subject>Klebsiella Infections - microbiology</subject><subject>Klebsiella pneumoniae - isolation & purification</subject><subject>Klebsiella pneumoniae - physiology</subject><subject>Machine Learning</subject><subject>Microbial Interactions</subject><subject>Microscopy, Electron, Scanning</subject><subject>Spectrum Analysis, Raman - methods</subject><issn>0882-4010</issn><issn>1096-1208</issn><issn>1096-1208</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2025</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkcmO1DAQhiMEYpqBRwD5yCWNncWJTwi1hkWMhMRytip2peOWl2AnIw2vyEvhTDdcuXgpf-W_fv1F8ZLRPaOMvzntnVEzLNO-olWba13V00fFjlHBS1bR_nGxo31flQ1l9Kp4ltKJUiqaWjwtrmrRcdZ1bFf8_ras-p6EkRi_YAS1mODzmegVbJlmVAYTGUwYjXUbdgCvjQZytDBEWIDkO_lscUgGrQUye1xd8AaQqFCaFCwsqMkYgyMzRjNPWcWSO_RhTURlA5h1yZqMP5Kv4MATNcE2SIZ_wcM4DuZ5e96kHKjJeCQWIfqHoj2GaJbJpefFkxFswheX_br48f7m--Fjefvlw6fDu9tSMdGwkvcAjRhq1KJrOoojpyO2nA0VV73QdNBVV4HqBNWqGloOlR6aUWnO89K0bX1dvD7_O8fwc8W0SGeS2tx7zKZkzVoueE-5yGh7RlUMKUUc5RyNg3gvGZVbjvIkLznKLUd5zjH3vbpIrIND_a_rb3AZeHsGMBu9Mxhlykl5hdpEVIvUwfxH4g9zBLe5</recordid><startdate>202502</startdate><enddate>202502</enddate><creator>Benahmed, Abdeselem</creator><creator>Seghir, Abdelfettah</creator><creator>Dergal, Fayçal</creator><creator>Chiali, Anisse</creator><creator>Boucherit-Otmani, Zahia</creator><creator>Ziani-Chérif, Chewki</creator><general>Elsevier Ltd</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-5314-1566</orcidid><orcidid>https://orcid.org/0000-0002-6624-0029</orcidid></search><sort><creationdate>202502</creationdate><title>Study of interaction in dual-species biofilm of Candida glabrata and Klebsiella pneumoniae co-isolated from peripheral venous catheter using Raman characterization mapping and machine learning algorithms</title><author>Benahmed, Abdeselem ; Seghir, Abdelfettah ; Dergal, Fayçal ; Chiali, Anisse ; Boucherit-Otmani, Zahia ; Ziani-Chérif, Chewki</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c1941-68aa49b3ed97470ef60fe561b26c89d0bd272ac790dc2b56a2db4fcd66fcd4553</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2025</creationdate><topic>Algorithms</topic><topic>Biofilms - growth & development</topic><topic>Candida glabrata - isolation & purification</topic><topic>Candida glabrata - physiology</topic><topic>Catheter-Related Infections - microbiology</topic><topic>Coinfection - microbiology</topic><topic>Humans</topic><topic>Klebsiella Infections - microbiology</topic><topic>Klebsiella pneumoniae - isolation & purification</topic><topic>Klebsiella pneumoniae - physiology</topic><topic>Machine Learning</topic><topic>Microbial Interactions</topic><topic>Microscopy, Electron, Scanning</topic><topic>Spectrum Analysis, Raman - methods</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Benahmed, Abdeselem</creatorcontrib><creatorcontrib>Seghir, Abdelfettah</creatorcontrib><creatorcontrib>Dergal, Fayçal</creatorcontrib><creatorcontrib>Chiali, Anisse</creatorcontrib><creatorcontrib>Boucherit-Otmani, Zahia</creatorcontrib><creatorcontrib>Ziani-Chérif, Chewki</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Microbial pathogenesis</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Benahmed, Abdeselem</au><au>Seghir, Abdelfettah</au><au>Dergal, Fayçal</au><au>Chiali, Anisse</au><au>Boucherit-Otmani, Zahia</au><au>Ziani-Chérif, Chewki</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Study of interaction in dual-species biofilm of Candida glabrata and Klebsiella pneumoniae co-isolated from peripheral venous catheter using Raman characterization mapping and machine learning algorithms</atitle><jtitle>Microbial pathogenesis</jtitle><addtitle>Microb Pathog</addtitle><date>2025-02</date><risdate>2025</risdate><volume>199</volume><spage>107280</spage><pages>107280-</pages><artnum>107280</artnum><issn>0882-4010</issn><issn>1096-1208</issn><eissn>1096-1208</eissn><abstract>Polymicrobial biofilm infections, especially associated with medical devices such as peripheral venous catheters, are challenging in clinical settings for treatment and management. In this study, we examined the mixed biofilm formed by Candida glabrata and Klebsiella pneumoniae, which were co-isolated from the same peripheral venous catheter. Our results revealed that C. glabrata can form mixed biofilms with K. pneumoniae in vitro on peripheral venous catheters and the bottom of microplate wells, as confirmed by scanning electron microscopy. Additionally, using Raman mapping, we showed the distribution of both species in mono- and dual-species biofilms and suggested the type of microbial interaction in this polymicrobial biofilm. Finally, with the assistance of appropriate machine learning (ML) algorithms, based on identified peaks of bacteria, yeast, catheter, and Microplate mapping spectra, we develop a dedicated Raman database to detect the presence of these elements in an unknown spectrum in the future.
•Candida glabrata formed mixed biofilms with Klebsiella pneumoniaein vitro, as confirmed by scanning electron microscopy.•The Raman microscopy mapping showed the distribution of both species in single and mixed biofilms.•Using AI tools, we developed a potential method to identify and quantify reference elements in unknown Raman spectra.</abstract><cop>England</cop><pub>Elsevier Ltd</pub><pmid>39761771</pmid><doi>10.1016/j.micpath.2025.107280</doi><orcidid>https://orcid.org/0000-0002-5314-1566</orcidid><orcidid>https://orcid.org/0000-0002-6624-0029</orcidid></addata></record> |
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subjects | Algorithms Biofilms - growth & development Candida glabrata - isolation & purification Candida glabrata - physiology Catheter-Related Infections - microbiology Coinfection - microbiology Humans Klebsiella Infections - microbiology Klebsiella pneumoniae - isolation & purification Klebsiella pneumoniae - physiology Machine Learning Microbial Interactions Microscopy, Electron, Scanning Spectrum Analysis, Raman - methods |
title | Study of interaction in dual-species biofilm of Candida glabrata and Klebsiella pneumoniae co-isolated from peripheral venous catheter using Raman characterization mapping and machine learning algorithms |
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