DNA barcoding of invasive Gambusia holbrooki Girard, 1859 and Atherina boyeri Risso, 1810 inhabiting Upper Euphrates River Basin, Türkiye
The main contributor to Türkiye’s abundant freshwater fish biodiversity is its geographic location. This fauna consists of endemic, native, and non-native fish species. The introduction of Gambusia holbrooki Girard, 1859 to Lake Amik in the 1920s for the biological control of malaria was the first i...
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description | The main contributor to Türkiye’s abundant freshwater fish biodiversity is its geographic location. This fauna consists of endemic, native, and non-native fish species. The introduction of
Gambusia holbrooki
Girard, 1859 to Lake Amik in the 1920s for the biological control of malaria was the first introduction of nonnative species to Türkiye.
Atherina boyeri
Risso, 1810 and other nonnative fish species have recently been introduced to Türkiye’s freshwaters. In this research, the first records of invasive
Gambusia holbrooki
(Keban Dam Lake, in Elazığ Province) and
Atherina boyeri
(Karakaya Dam Lake, in Elazığ Province) are cited from the Upper Euphrates River Basin in the Eastern Anatolia Region of Türkiye. In situ electrofishing equipment was used to gather the specimens. Fish muscle samples were used to extract genomic DNA, which was then used to barcode the mitochondrial cytochrome c oxidase subunit I (COI) gene to identify different species of fish. The identification of invasive fish species using DNA barcoding is an effective technique, as evidenced by the comparison of amplified COI sequences to the BLAST database. |
doi_str_mv | 10.1038/s41598-025-85828-z |
format | Article |
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Gambusia holbrooki
Girard, 1859 to Lake Amik in the 1920s for the biological control of malaria was the first introduction of nonnative species to Türkiye.
Atherina boyeri
Risso, 1810 and other nonnative fish species have recently been introduced to Türkiye’s freshwaters. In this research, the first records of invasive
Gambusia holbrooki
(Keban Dam Lake, in Elazığ Province) and
Atherina boyeri
(Karakaya Dam Lake, in Elazığ Province) are cited from the Upper Euphrates River Basin in the Eastern Anatolia Region of Türkiye. In situ electrofishing equipment was used to gather the specimens. Fish muscle samples were used to extract genomic DNA, which was then used to barcode the mitochondrial cytochrome c oxidase subunit I (COI) gene to identify different species of fish. The identification of invasive fish species using DNA barcoding is an effective technique, as evidenced by the comparison of amplified COI sequences to the BLAST database.</description><identifier>ISSN: 2045-2322</identifier><identifier>EISSN: 2045-2322</identifier><identifier>DOI: 10.1038/s41598-025-85828-z</identifier><identifier>PMID: 39809825</identifier><language>eng</language><publisher>London: Nature Publishing Group UK</publisher><subject>631/158/2178 ; 631/601/2722 ; Animals ; Atherina boyeri ; Atherinidae ; Biodiversity ; Biological control ; COI ; Creeks & streams ; Cyprinodontiformes - classification ; Cyprinodontiformes - genetics ; Cytochrome-c oxidase ; Deoxyribonucleic acid ; DNA ; DNA barcoding ; DNA Barcoding, Taxonomic - methods ; Electron Transport Complex IV - genetics ; Endemic species ; Fish ; Fisheries ; Freshwater fish ; Gambusia holbrooki ; Humanities and Social Sciences ; Indigenous species ; Introduced Species ; Invasive fish ; Karakaya Dam Lake ; Keban Dam Lake ; Lakes ; Malaria ; Mitochondrial DNA ; multidisciplinary ; Native species ; New records ; Nonnative species ; Nucleotide sequence ; Phylogeny ; Poeciliidae ; River basins ; Rivers ; Science ; Science (multidisciplinary) ; Sperm ; Turkey ; Vector-borne diseases</subject><ispartof>Scientific reports, 2025-01, Vol.15 (1), p.1907-14, Article 1907</ispartof><rights>The Author(s) 2025</rights><rights>2025. The Author(s).</rights><rights>Copyright Nature Publishing Group 2025</rights><rights>The Author(s) 2025 2025</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c422t-9f3d90c2c0ea8364a527824b05584386b917f5c9e79dcdd74c114035a55d461c3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC11733162/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC11733162/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,860,881,2096,27901,27902,41096,42165,51551,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/39809825$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Eroğlu, Mücahit</creatorcontrib><creatorcontrib>Çelik, Işılay</creatorcontrib><creatorcontrib>Düşükcan, Mustafa</creatorcontrib><creatorcontrib>Ünal, Esra Mine</creatorcontrib><creatorcontrib>Çoban, Mehmet Zülfü</creatorcontrib><creatorcontrib>Gündüz, Fatih</creatorcontrib><creatorcontrib>Keskin, Emre</creatorcontrib><title>DNA barcoding of invasive Gambusia holbrooki Girard, 1859 and Atherina boyeri Risso, 1810 inhabiting Upper Euphrates River Basin, Türkiye</title><title>Scientific reports</title><addtitle>Sci Rep</addtitle><addtitle>Sci Rep</addtitle><description>The main contributor to Türkiye’s abundant freshwater fish biodiversity is its geographic location. This fauna consists of endemic, native, and non-native fish species. The introduction of
Gambusia holbrooki
Girard, 1859 to Lake Amik in the 1920s for the biological control of malaria was the first introduction of nonnative species to Türkiye.
Atherina boyeri
Risso, 1810 and other nonnative fish species have recently been introduced to Türkiye’s freshwaters. In this research, the first records of invasive
Gambusia holbrooki
(Keban Dam Lake, in Elazığ Province) and
Atherina boyeri
(Karakaya Dam Lake, in Elazığ Province) are cited from the Upper Euphrates River Basin in the Eastern Anatolia Region of Türkiye. In situ electrofishing equipment was used to gather the specimens. Fish muscle samples were used to extract genomic DNA, which was then used to barcode the mitochondrial cytochrome c oxidase subunit I (COI) gene to identify different species of fish. The identification of invasive fish species using DNA barcoding is an effective technique, as evidenced by the comparison of amplified COI sequences to the BLAST database.</description><subject>631/158/2178</subject><subject>631/601/2722</subject><subject>Animals</subject><subject>Atherina boyeri</subject><subject>Atherinidae</subject><subject>Biodiversity</subject><subject>Biological control</subject><subject>COI</subject><subject>Creeks & streams</subject><subject>Cyprinodontiformes - classification</subject><subject>Cyprinodontiformes - genetics</subject><subject>Cytochrome-c oxidase</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>DNA barcoding</subject><subject>DNA Barcoding, Taxonomic - methods</subject><subject>Electron Transport Complex IV - genetics</subject><subject>Endemic species</subject><subject>Fish</subject><subject>Fisheries</subject><subject>Freshwater fish</subject><subject>Gambusia holbrooki</subject><subject>Humanities and Social Sciences</subject><subject>Indigenous species</subject><subject>Introduced Species</subject><subject>Invasive fish</subject><subject>Karakaya Dam Lake</subject><subject>Keban Dam Lake</subject><subject>Lakes</subject><subject>Malaria</subject><subject>Mitochondrial DNA</subject><subject>multidisciplinary</subject><subject>Native species</subject><subject>New records</subject><subject>Nonnative species</subject><subject>Nucleotide sequence</subject><subject>Phylogeny</subject><subject>Poeciliidae</subject><subject>River basins</subject><subject>Rivers</subject><subject>Science</subject><subject>Science (multidisciplinary)</subject><subject>Sperm</subject><subject>Turkey</subject><subject>Vector-borne diseases</subject><issn>2045-2322</issn><issn>2045-2322</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2025</creationdate><recordtype>article</recordtype><sourceid>C6C</sourceid><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><sourceid>DOA</sourceid><recordid>eNp9ks1u1DAURiMEolXpC7BAltiwaMC_ib1CQ2mHShVIqF1bN7Yz42kmHuxkpOkj8Ezs-mJ4ZkppWeBNrnPPPU6sryheE_yeYCY_JE6EkiWmopRCUlnePisOKeaipIzS54_qg-I4pQXOS1DFiXpZHDAlsZJUHBY_P3-doAaiCdb3MxRa5Ps1JL92aArLZkwe0Dx0TQzhxqOpjxDtCSJSKAS9RZNh7qLvATVhkwv03acUtn2Cs2gOjR-22uvVykV0Nq7mEQaXMrbO-0_5nP4EXd39ijd-414VL1rokju-fx4V1-dnV6dfystv04vTyWVpOKVDqVpmFTbUYAeSVRwErSXlDRZCciarRpG6FUa5Wlljbc0NIRwzAUJYXhHDjoqLvdcGWOhV9EuIGx3A692LEGca4uBN53TLCBiC2waqlldMNhg7iw3HtMolJdn1ce9ajc3SWeP6IUL3RPq00_u5noW1JqRmjFQ0G97dG2L4Mbo06KVPxnUd9C6MSTMiRE1qKVVG3_6DLsIY-3xXO4pXitItRfeUiSGl6NqHryFYb6Oj99HROTp6Fx19m4fePP6Ph5E_QckA2wMpt_qZi3_P_o_2Nx-4zrQ</recordid><startdate>20250114</startdate><enddate>20250114</enddate><creator>Eroğlu, Mücahit</creator><creator>Çelik, Işılay</creator><creator>Düşükcan, Mustafa</creator><creator>Ünal, Esra Mine</creator><creator>Çoban, Mehmet Zülfü</creator><creator>Gündüz, Fatih</creator><creator>Keskin, Emre</creator><general>Nature Publishing Group UK</general><general>Nature Publishing Group</general><general>Nature Portfolio</general><scope>C6C</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>88I</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7P</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20250114</creationdate><title>DNA barcoding of invasive Gambusia holbrooki Girard, 1859 and Atherina boyeri Risso, 1810 inhabiting Upper Euphrates River Basin, Türkiye</title><author>Eroğlu, Mücahit ; Çelik, Işılay ; Düşükcan, Mustafa ; Ünal, Esra Mine ; Çoban, Mehmet Zülfü ; Gündüz, Fatih ; Keskin, Emre</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c422t-9f3d90c2c0ea8364a527824b05584386b917f5c9e79dcdd74c114035a55d461c3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2025</creationdate><topic>631/158/2178</topic><topic>631/601/2722</topic><topic>Animals</topic><topic>Atherina boyeri</topic><topic>Atherinidae</topic><topic>Biodiversity</topic><topic>Biological control</topic><topic>COI</topic><topic>Creeks & streams</topic><topic>Cyprinodontiformes - classification</topic><topic>Cyprinodontiformes - genetics</topic><topic>Cytochrome-c oxidase</topic><topic>Deoxyribonucleic acid</topic><topic>DNA</topic><topic>DNA barcoding</topic><topic>DNA Barcoding, Taxonomic - methods</topic><topic>Electron Transport Complex IV - genetics</topic><topic>Endemic species</topic><topic>Fish</topic><topic>Fisheries</topic><topic>Freshwater fish</topic><topic>Gambusia holbrooki</topic><topic>Humanities and Social Sciences</topic><topic>Indigenous species</topic><topic>Introduced Species</topic><topic>Invasive fish</topic><topic>Karakaya Dam Lake</topic><topic>Keban Dam Lake</topic><topic>Lakes</topic><topic>Malaria</topic><topic>Mitochondrial DNA</topic><topic>multidisciplinary</topic><topic>Native species</topic><topic>New records</topic><topic>Nonnative species</topic><topic>Nucleotide sequence</topic><topic>Phylogeny</topic><topic>Poeciliidae</topic><topic>River basins</topic><topic>Rivers</topic><topic>Science</topic><topic>Science (multidisciplinary)</topic><topic>Sperm</topic><topic>Turkey</topic><topic>Vector-borne diseases</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Eroğlu, Mücahit</creatorcontrib><creatorcontrib>Çelik, Işılay</creatorcontrib><creatorcontrib>Düşükcan, Mustafa</creatorcontrib><creatorcontrib>Ünal, Esra Mine</creatorcontrib><creatorcontrib>Çoban, Mehmet Zülfü</creatorcontrib><creatorcontrib>Gündüz, Fatih</creatorcontrib><creatorcontrib>Keskin, Emre</creatorcontrib><collection>Springer Nature OA Free Journals</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Science Database (Alumni Edition)</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Science Database</collection><collection>Biological Science Database</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>Scientific reports</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Eroğlu, Mücahit</au><au>Çelik, Işılay</au><au>Düşükcan, Mustafa</au><au>Ünal, Esra Mine</au><au>Çoban, Mehmet Zülfü</au><au>Gündüz, Fatih</au><au>Keskin, Emre</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>DNA barcoding of invasive Gambusia holbrooki Girard, 1859 and Atherina boyeri Risso, 1810 inhabiting Upper Euphrates River Basin, Türkiye</atitle><jtitle>Scientific reports</jtitle><stitle>Sci Rep</stitle><addtitle>Sci Rep</addtitle><date>2025-01-14</date><risdate>2025</risdate><volume>15</volume><issue>1</issue><spage>1907</spage><epage>14</epage><pages>1907-14</pages><artnum>1907</artnum><issn>2045-2322</issn><eissn>2045-2322</eissn><abstract>The main contributor to Türkiye’s abundant freshwater fish biodiversity is its geographic location. This fauna consists of endemic, native, and non-native fish species. The introduction of
Gambusia holbrooki
Girard, 1859 to Lake Amik in the 1920s for the biological control of malaria was the first introduction of nonnative species to Türkiye.
Atherina boyeri
Risso, 1810 and other nonnative fish species have recently been introduced to Türkiye’s freshwaters. In this research, the first records of invasive
Gambusia holbrooki
(Keban Dam Lake, in Elazığ Province) and
Atherina boyeri
(Karakaya Dam Lake, in Elazığ Province) are cited from the Upper Euphrates River Basin in the Eastern Anatolia Region of Türkiye. In situ electrofishing equipment was used to gather the specimens. Fish muscle samples were used to extract genomic DNA, which was then used to barcode the mitochondrial cytochrome c oxidase subunit I (COI) gene to identify different species of fish. The identification of invasive fish species using DNA barcoding is an effective technique, as evidenced by the comparison of amplified COI sequences to the BLAST database.</abstract><cop>London</cop><pub>Nature Publishing Group UK</pub><pmid>39809825</pmid><doi>10.1038/s41598-025-85828-z</doi><tpages>14</tpages><oa>free_for_read</oa></addata></record> |
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subjects | 631/158/2178 631/601/2722 Animals Atherina boyeri Atherinidae Biodiversity Biological control COI Creeks & streams Cyprinodontiformes - classification Cyprinodontiformes - genetics Cytochrome-c oxidase Deoxyribonucleic acid DNA DNA barcoding DNA Barcoding, Taxonomic - methods Electron Transport Complex IV - genetics Endemic species Fish Fisheries Freshwater fish Gambusia holbrooki Humanities and Social Sciences Indigenous species Introduced Species Invasive fish Karakaya Dam Lake Keban Dam Lake Lakes Malaria Mitochondrial DNA multidisciplinary Native species New records Nonnative species Nucleotide sequence Phylogeny Poeciliidae River basins Rivers Science Science (multidisciplinary) Sperm Turkey Vector-borne diseases |
title | DNA barcoding of invasive Gambusia holbrooki Girard, 1859 and Atherina boyeri Risso, 1810 inhabiting Upper Euphrates River Basin, Türkiye |
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