The Complete Chloroplast Genome of Erythrina variegata L. (Papilionoideae, Fabaceae)
ABSTRACT Erythrina variegata L. 1754, a thorny deciduous tree of Fabaceae, contains various chemical compounds such as alkaloids, flavonoids, and triterpenoids and exhibits anti‐depressant, anti‐inflammatory, and antidiabetic activities. However, genomic data of E. variegata are limited. In this stu...
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| creator | Nhat Nam, Nguyen Ngoc Trai, Nguyen Phuong Thuy, Nguyen Quoc Duy, Le Nguyen Tuong Van, Pham Nguyen, Tan Tai Do, Hoang Dang Khoa |
| description | ABSTRACT
Erythrina variegata L. 1754, a thorny deciduous tree of Fabaceae, contains various chemical compounds such as alkaloids, flavonoids, and triterpenoids and exhibits anti‐depressant, anti‐inflammatory, and antidiabetic activities. However, genomic data of E. variegata are limited. In this study, the complete chloroplast genome of E. variegata was sequenced and characterized using Illumina sequencing platform. The chloroplast genome of E. variegata was 152,351 bp in length and consisted of a large single copy (82,907 bp), a small single copy (26,309 bp), and two inverted repeat regions (16,826 bp). There were 79 protein‐coding genes, 30 transfer RNA genes, and four ribosomal RNA genes. Comparative analysis revealed high conservation of chloroplast genomes among Erythrina species regarding genome size, structure, and gene content. The phylogenetic study also indicated a close relationship between E. variagata and E. sanwicensis. This study provides initial plastome data for further genomic studies examining E. variegata and related species in Fabaceae.
This study reports the complete chloroplast genome of Erythrina variegata and its features. Also, comparative genomic analysis was conducted to explore the genomic diversity among Erythrina species. The phylogenetic study also revealed the relationship between E. variegata and related species in Fabaceae. |
| doi_str_mv | 10.1002/ece3.70838 |
| format | Article |
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Erythrina variegata L. 1754, a thorny deciduous tree of Fabaceae, contains various chemical compounds such as alkaloids, flavonoids, and triterpenoids and exhibits anti‐depressant, anti‐inflammatory, and antidiabetic activities. However, genomic data of E. variegata are limited. In this study, the complete chloroplast genome of E. variegata was sequenced and characterized using Illumina sequencing platform. The chloroplast genome of E. variegata was 152,351 bp in length and consisted of a large single copy (82,907 bp), a small single copy (26,309 bp), and two inverted repeat regions (16,826 bp). There were 79 protein‐coding genes, 30 transfer RNA genes, and four ribosomal RNA genes. Comparative analysis revealed high conservation of chloroplast genomes among Erythrina species regarding genome size, structure, and gene content. The phylogenetic study also indicated a close relationship between E. variagata and E. sanwicensis. This study provides initial plastome data for further genomic studies examining E. variegata and related species in Fabaceae.
This study reports the complete chloroplast genome of Erythrina variegata and its features. Also, comparative genomic analysis was conducted to explore the genomic diversity among Erythrina species. The phylogenetic study also revealed the relationship between E. variegata and related species in Fabaceae.</description><identifier>ISSN: 2045-7758</identifier><identifier>EISSN: 2045-7758</identifier><identifier>DOI: 10.1002/ece3.70838</identifier><identifier>PMID: 39803188</identifier><language>eng</language><publisher>England: John Wiley & Sons, Inc</publisher><subject>Antidiabetics ; Chemical compounds ; Chloroplasts ; Comparative analysis ; comparative genomics ; Cytochrome ; Deciduous trees ; Diabetes mellitus ; Erythrina variegata ; Fabaceae ; Flavonoids ; Gene sequencing ; Genes ; Genetic testing ; Genomes ; Genomic analysis ; Indian coral tree ; Inverted repeat ; Phylogenetics ; phylogeny ; plastome ; Proteins ; Ribonucleic acid ; RNA ; RNA polymerase ; rRNA ; Transfer RNA ; Triterpenoids</subject><ispartof>Ecology and evolution, 2025-01, Vol.15 (1), p.e70838-n/a</ispartof><rights>2025 The Author(s). published by John Wiley & Sons Ltd.</rights><rights>2025 The Author(s). Ecology and Evolution published by John Wiley & Sons Ltd.</rights><rights>2025. This work is published under http://creativecommons.org/licenses/by/4.0/ (the "License"). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c3128-409382590a9d7c0480129033c5b4be8c7a55ae0671fc0a8459c4ce47d27829913</cites><orcidid>0000-0002-7970-9359 ; 0000-0002-0505-5946</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1002%2Fece3.70838$$EPDF$$P50$$Gwiley$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1002%2Fece3.70838$$EHTML$$P50$$Gwiley$$Hfree_for_read</linktohtml><link.rule.ids>314,776,780,860,1411,2096,11541,27901,27902,45550,45551,46027,46451</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/39803188$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Nhat Nam, Nguyen</creatorcontrib><creatorcontrib>Ngoc Trai, Nguyen</creatorcontrib><creatorcontrib>Phuong Thuy, Nguyen</creatorcontrib><creatorcontrib>Quoc Duy, Le</creatorcontrib><creatorcontrib>Nguyen Tuong Van, Pham</creatorcontrib><creatorcontrib>Nguyen, Tan Tai</creatorcontrib><creatorcontrib>Do, Hoang Dang Khoa</creatorcontrib><title>The Complete Chloroplast Genome of Erythrina variegata L. (Papilionoideae, Fabaceae)</title><title>Ecology and evolution</title><addtitle>Ecol Evol</addtitle><description>ABSTRACT
Erythrina variegata L. 1754, a thorny deciduous tree of Fabaceae, contains various chemical compounds such as alkaloids, flavonoids, and triterpenoids and exhibits anti‐depressant, anti‐inflammatory, and antidiabetic activities. However, genomic data of E. variegata are limited. In this study, the complete chloroplast genome of E. variegata was sequenced and characterized using Illumina sequencing platform. The chloroplast genome of E. variegata was 152,351 bp in length and consisted of a large single copy (82,907 bp), a small single copy (26,309 bp), and two inverted repeat regions (16,826 bp). There were 79 protein‐coding genes, 30 transfer RNA genes, and four ribosomal RNA genes. Comparative analysis revealed high conservation of chloroplast genomes among Erythrina species regarding genome size, structure, and gene content. The phylogenetic study also indicated a close relationship between E. variagata and E. sanwicensis. This study provides initial plastome data for further genomic studies examining E. variegata and related species in Fabaceae.
This study reports the complete chloroplast genome of Erythrina variegata and its features. Also, comparative genomic analysis was conducted to explore the genomic diversity among Erythrina species. The phylogenetic study also revealed the relationship between E. variegata and related species in Fabaceae.</description><subject>Antidiabetics</subject><subject>Chemical compounds</subject><subject>Chloroplasts</subject><subject>Comparative analysis</subject><subject>comparative genomics</subject><subject>Cytochrome</subject><subject>Deciduous trees</subject><subject>Diabetes mellitus</subject><subject>Erythrina variegata</subject><subject>Fabaceae</subject><subject>Flavonoids</subject><subject>Gene sequencing</subject><subject>Genes</subject><subject>Genetic testing</subject><subject>Genomes</subject><subject>Genomic analysis</subject><subject>Indian coral tree</subject><subject>Inverted repeat</subject><subject>Phylogenetics</subject><subject>phylogeny</subject><subject>plastome</subject><subject>Proteins</subject><subject>Ribonucleic acid</subject><subject>RNA</subject><subject>RNA polymerase</subject><subject>rRNA</subject><subject>Transfer RNA</subject><subject>Triterpenoids</subject><issn>2045-7758</issn><issn>2045-7758</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2025</creationdate><recordtype>article</recordtype><sourceid>24P</sourceid><sourceid>BENPR</sourceid><sourceid>DOA</sourceid><recordid>eNp9kU1r3DAQhk1paUKaS39AMfSSlu529GVJx7Js0sBCe9iexViezWqxLVf2puy_rxKnofTQucyLeHgY8RbFWwZLBsA_kyex1GCEeVGcc5BqobUyL__KZ8XlOB4gTwVcgn5dnAlrQDBjzovtdk_lKnZDS1MO-zamOLQ4TuUN9bGjMu7KdTpN-xR6LO8xBbrDCcvNsrz6jkNoQ-xjaAjpU3mNNfqcPrwpXu2wHenyaV8UP67X29XXxebbze3qy2bhBeNmIcEKw5UFtI32IA0wbkEIr2pZk_EalUKCSrOdBzRSWS89Sd1wbbi1TFwUt7O3iXhwQwodppOLGNzjQ0x3DtMUfEtO6Lo2EoU3QksSwnJovKiYrr0BjZhdV7NrSPHnkcbJdWH01LbYUzyOTjAlTb7O2Iy-_wc9xGPq808zVUGltKyqTH2cKZ_iOCbaPR_IwD1U5x6qc4_VZfjdk_JYd9Q8o3-KygCbgV-hpdN_VG69WotZ-hsOcJ6O</recordid><startdate>202501</startdate><enddate>202501</enddate><creator>Nhat Nam, Nguyen</creator><creator>Ngoc Trai, Nguyen</creator><creator>Phuong Thuy, Nguyen</creator><creator>Quoc Duy, Le</creator><creator>Nguyen Tuong Van, Pham</creator><creator>Nguyen, Tan Tai</creator><creator>Do, Hoang Dang Khoa</creator><general>John Wiley & Sons, Inc</general><general>Wiley</general><scope>24P</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7SN</scope><scope>7SS</scope><scope>7ST</scope><scope>7X2</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M0K</scope><scope>M7P</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>SOI</scope><scope>7X8</scope><scope>DOA</scope><orcidid>https://orcid.org/0000-0002-7970-9359</orcidid><orcidid>https://orcid.org/0000-0002-0505-5946</orcidid></search><sort><creationdate>202501</creationdate><title>The Complete Chloroplast Genome of Erythrina variegata L. 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(Papilionoideae, Fabaceae)</atitle><jtitle>Ecology and evolution</jtitle><addtitle>Ecol Evol</addtitle><date>2025-01</date><risdate>2025</risdate><volume>15</volume><issue>1</issue><spage>e70838</spage><epage>n/a</epage><pages>e70838-n/a</pages><issn>2045-7758</issn><eissn>2045-7758</eissn><abstract>ABSTRACT
Erythrina variegata L. 1754, a thorny deciduous tree of Fabaceae, contains various chemical compounds such as alkaloids, flavonoids, and triterpenoids and exhibits anti‐depressant, anti‐inflammatory, and antidiabetic activities. However, genomic data of E. variegata are limited. In this study, the complete chloroplast genome of E. variegata was sequenced and characterized using Illumina sequencing platform. The chloroplast genome of E. variegata was 152,351 bp in length and consisted of a large single copy (82,907 bp), a small single copy (26,309 bp), and two inverted repeat regions (16,826 bp). There were 79 protein‐coding genes, 30 transfer RNA genes, and four ribosomal RNA genes. Comparative analysis revealed high conservation of chloroplast genomes among Erythrina species regarding genome size, structure, and gene content. The phylogenetic study also indicated a close relationship between E. variagata and E. sanwicensis. This study provides initial plastome data for further genomic studies examining E. variegata and related species in Fabaceae.
This study reports the complete chloroplast genome of Erythrina variegata and its features. Also, comparative genomic analysis was conducted to explore the genomic diversity among Erythrina species. The phylogenetic study also revealed the relationship between E. variegata and related species in Fabaceae.</abstract><cop>England</cop><pub>John Wiley & Sons, Inc</pub><pmid>39803188</pmid><doi>10.1002/ece3.70838</doi><tpages>8</tpages><orcidid>https://orcid.org/0000-0002-7970-9359</orcidid><orcidid>https://orcid.org/0000-0002-0505-5946</orcidid><oa>free_for_read</oa></addata></record> |
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| subjects | Antidiabetics Chemical compounds Chloroplasts Comparative analysis comparative genomics Cytochrome Deciduous trees Diabetes mellitus Erythrina variegata Fabaceae Flavonoids Gene sequencing Genes Genetic testing Genomes Genomic analysis Indian coral tree Inverted repeat Phylogenetics phylogeny plastome Proteins Ribonucleic acid RNA RNA polymerase rRNA Transfer RNA Triterpenoids |
| title | The Complete Chloroplast Genome of Erythrina variegata L. (Papilionoideae, Fabaceae) |
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