Genome-wide identification of the GDSL-type esterase/lipase protein (GELP) gene family in Ricinus communis and its transcriptional regulation during germination and seedling establishment under different abiotic stresses

GDSL-type esterase/lipase protein (GELP) genes are crucial in the specialized lipid metabolism, in the responses to abiotic stresses, and in the regulation of plant homeostasis. R. communis is an important oilseed crop species that can sustain growth and productivity when exposed to harsh environmen...

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Veröffentlicht in:Plant physiology and biochemistry 2024-09, Vol.214, p.108939, Article 108939
Hauptverfasser: de Almeida, Catherine P., Barbosa, Rhaissa R., Ferraz, Caline G., de Castro, Renato D., Ribeiro, Paulo R.
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container_start_page 108939
container_title Plant physiology and biochemistry
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creator de Almeida, Catherine P.
Barbosa, Rhaissa R.
Ferraz, Caline G.
de Castro, Renato D.
Ribeiro, Paulo R.
description GDSL-type esterase/lipase protein (GELP) genes are crucial in the specialized lipid metabolism, in the responses to abiotic stresses, and in the regulation of plant homeostasis. R. communis is an important oilseed crop species that can sustain growth and productivity when exposed to harsh environmental conditions. Herein, we raised the question of whether the GELP gene family could be involved in the acquisition of R. communis tolerance to abiotic stresses during seed germination and seedling establishment. Thus, we used bioinformatics and transcriptomics to characterize the R. communis GELP gene family. R. communis genome possesses 96 GELP genes that were characterized by extensive bioinformatics, including phylogenetic analysis, subcellular localization, exon-intron distribution, the analysis of regulatory cis-elements, tandem duplication, and physicochemical properties. Transcriptomics indicated that numerous RcGELP genes are readily responsive to high-temperature and salt stresses and might be potential candidates for genome editing techniques to develop abiotic stress-tolerant crops. •R. communis GELP gene family was characterized by bioinformatics and transcriptomics.•R. communis genome possesses 96 GELP genes (GDSL-like Lipase/Acylhydrolase domain).•The majority of RcGELP genes are responsive to high-temperature and/or salt stress.•GELP genes are potential candidates to address stress-related agronomic crop issues.•Introduction.
doi_str_mv 10.1016/j.plaphy.2024.108939
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development</topic><topic>Stress, Physiological - genetics</topic><topic>transcription (genetics)</topic><topic>transcriptomics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>de Almeida, Catherine P.</creatorcontrib><creatorcontrib>Barbosa, Rhaissa R.</creatorcontrib><creatorcontrib>Ferraz, Caline G.</creatorcontrib><creatorcontrib>de Castro, Renato D.</creatorcontrib><creatorcontrib>Ribeiro, Paulo R.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>AGRICOLA</collection><collection>AGRICOLA - Academic</collection><jtitle>Plant physiology and biochemistry</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>de Almeida, Catherine P.</au><au>Barbosa, Rhaissa R.</au><au>Ferraz, Caline G.</au><au>de Castro, Renato D.</au><au>Ribeiro, Paulo R.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genome-wide identification of the GDSL-type esterase/lipase protein (GELP) gene family in Ricinus communis and its transcriptional regulation during germination and seedling establishment under different abiotic stresses</atitle><jtitle>Plant physiology and biochemistry</jtitle><addtitle>Plant Physiol Biochem</addtitle><date>2024-09</date><risdate>2024</risdate><volume>214</volume><spage>108939</spage><pages>108939-</pages><artnum>108939</artnum><issn>0981-9428</issn><issn>1873-2690</issn><eissn>1873-2690</eissn><abstract>GDSL-type esterase/lipase protein (GELP) genes are crucial in the specialized lipid metabolism, in the responses to abiotic stresses, and in the regulation of plant homeostasis. 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ispartof Plant physiology and biochemistry, 2024-09, Vol.214, p.108939, Article 108939
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source MEDLINE; Elsevier ScienceDirect Journals
subjects Bioinformatics
carboxylic ester hydrolases
crops
Esterases - genetics
Esterases - metabolism
family
GDSL-Type esterase/lipase
Gene Expression Regulation, Plant
genes
Genome, Plant - genetics
Germination - genetics
homeostasis
Lipase - genetics
Lipase - metabolism
Lipid metabolism
Multigene Family
Oil bodies
oilseed crops
Phylogeny
plant establishment
Plant Proteins - genetics
Plant Proteins - metabolism
Plant-environment interactions
Ricinus - genetics
Ricinus - metabolism
Ricinus communis
seed germination
Seedlings - genetics
Seedlings - growth & development
Stress, Physiological - genetics
transcription (genetics)
transcriptomics
title Genome-wide identification of the GDSL-type esterase/lipase protein (GELP) gene family in Ricinus communis and its transcriptional regulation during germination and seedling establishment under different abiotic stresses
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