Muscle proteome profile and potential allergens of premature hilsa shad (Tenualosa ilisha)
In this study, for the first time, we profile the actual protein sequences of known and potential allergens of premature hilsa shad (Tenualosa ilisha), an economically important fish of South Asian countries. Proteomics was employed to dissect the muscle tissue proteome collected from the riverine h...
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Veröffentlicht in: | Journal of food composition and analysis 2023-10, Vol.123, p.105641, Article 105641 |
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creator | Shaheen, Nazma Najar, Fares Z. Chowdhury, Umar Faruq Chowdhury, Md. Arko Ayon Reza, Rifath Nehleen Halima, Oumma Foster, Steven B. Khan, Haseena Islam, Mohammad Riazul Ahsan, Nagib |
description | In this study, for the first time, we profile the actual protein sequences of known and potential allergens of premature hilsa shad (Tenualosa ilisha), an economically important fish of South Asian countries. Proteomics was employed to dissect the muscle tissue proteome collected from the riverine habitat hilsa samples. We successfully identified and quantified >600 proteins wherein many known allergens such as parvalbumins, beta-enolase, and creatine kinases were identified as abundant proteins in muscle tissue. Label-free quantitative proteomics revealed significant differences in the abundance of myosin, dynein, gamma-enolase, creatine kinase B-type, and collagens between the two hilsa samples. In silico analysis determined the allergen potential of these proteins. Notably, our findings indicate that many well-characterized allergen proteins are developmentally regulated in the muscle tissue. Thus, the profiling of a muscle tissue proteome map would further facilitate fundamental and applied research on hilsa fish and greatly improve our understanding of the crucial issue of hilsa customers' nutritional safety.
[Display omitted]
•First muscle tissue proteome map of Hilsa shad, an economically important fish.•Comparative allergome of immature Hilsa shad.•Actual peptide sequences of Hilsa allergen proteins were identified.•Some allergen proteins are developmentally regulated. |
doi_str_mv | 10.1016/j.jfca.2023.105641 |
format | Article |
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[Display omitted]
•First muscle tissue proteome map of Hilsa shad, an economically important fish.•Comparative allergome of immature Hilsa shad.•Actual peptide sequences of Hilsa allergen proteins were identified.•Some allergen proteins are developmentally regulated.</description><identifier>ISSN: 0889-1575</identifier><identifier>DOI: 10.1016/j.jfca.2023.105641</identifier><language>eng</language><publisher>Elsevier Inc</publisher><subject>allergens ; Allergome ; applied research ; Clupeidae ; computer simulation ; creatine ; creatine kinase ; Dietary security ; dynein ATPase ; Fish ; food composition ; muscle tissues ; muscles ; myosin ; phosphopyruvate hydratase ; proteome ; proteomics ; Quantitative proteomics ; riverine habitat ; Tenualosa ilisha</subject><ispartof>Journal of food composition and analysis, 2023-10, Vol.123, p.105641, Article 105641</ispartof><rights>2023 Elsevier Inc.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c284t-24608cf4960b6c1340b9b69229b7ba43c28b9643842a1cce94def464be8d3c003</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.jfca.2023.105641$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,776,780,3536,27903,27904,45974</link.rule.ids></links><search><creatorcontrib>Shaheen, Nazma</creatorcontrib><creatorcontrib>Najar, Fares Z.</creatorcontrib><creatorcontrib>Chowdhury, Umar Faruq</creatorcontrib><creatorcontrib>Chowdhury, Md. Arko Ayon</creatorcontrib><creatorcontrib>Reza, Rifath Nehleen</creatorcontrib><creatorcontrib>Halima, Oumma</creatorcontrib><creatorcontrib>Foster, Steven B.</creatorcontrib><creatorcontrib>Khan, Haseena</creatorcontrib><creatorcontrib>Islam, Mohammad Riazul</creatorcontrib><creatorcontrib>Ahsan, Nagib</creatorcontrib><title>Muscle proteome profile and potential allergens of premature hilsa shad (Tenualosa ilisha)</title><title>Journal of food composition and analysis</title><description>In this study, for the first time, we profile the actual protein sequences of known and potential allergens of premature hilsa shad (Tenualosa ilisha), an economically important fish of South Asian countries. Proteomics was employed to dissect the muscle tissue proteome collected from the riverine habitat hilsa samples. We successfully identified and quantified >600 proteins wherein many known allergens such as parvalbumins, beta-enolase, and creatine kinases were identified as abundant proteins in muscle tissue. Label-free quantitative proteomics revealed significant differences in the abundance of myosin, dynein, gamma-enolase, creatine kinase B-type, and collagens between the two hilsa samples. In silico analysis determined the allergen potential of these proteins. Notably, our findings indicate that many well-characterized allergen proteins are developmentally regulated in the muscle tissue. Thus, the profiling of a muscle tissue proteome map would further facilitate fundamental and applied research on hilsa fish and greatly improve our understanding of the crucial issue of hilsa customers' nutritional safety.
[Display omitted]
•First muscle tissue proteome map of Hilsa shad, an economically important fish.•Comparative allergome of immature Hilsa shad.•Actual peptide sequences of Hilsa allergen proteins were identified.•Some allergen proteins are developmentally regulated.</description><subject>allergens</subject><subject>Allergome</subject><subject>applied research</subject><subject>Clupeidae</subject><subject>computer simulation</subject><subject>creatine</subject><subject>creatine kinase</subject><subject>Dietary security</subject><subject>dynein ATPase</subject><subject>Fish</subject><subject>food composition</subject><subject>muscle tissues</subject><subject>muscles</subject><subject>myosin</subject><subject>phosphopyruvate hydratase</subject><subject>proteome</subject><subject>proteomics</subject><subject>Quantitative proteomics</subject><subject>riverine habitat</subject><subject>Tenualosa ilisha</subject><issn>0889-1575</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><recordid>eNp9kD9PwzAQxT2ARCl8AaaMZUiwHce1JRZU8U8qYikLi-U4F-rIiYudIPHtcQkz09399N7p7iF0RXBBMOE3XdG1RhcU0zKBijNyghZYCJmTal2dofMYO4xxRZlYoPeXKRoH2SH4EXz_27Q2AT002SGxYbTaZdo5CB8wxMy3SQK9HqcA2d66qLO410222sEwaefTbJ1N6PoCnbbaRbj8q0v09nC_2zzl29fH583dNjdUsDGnjGNhWiY5rrkhJcO1rLmkVNbrWrMyqWrJWSkY1cQYkKyBlnFWg2hKg3G5RKt5bzr9c4I4qt5GA87pAfwUVUkqRgSVUiQpnaUm-BgDtOoQbK_DtyJYHcNTnTqGp47hqTm8ZLqdTZCe-LIQVDQWBgONDWBG1Xj7n_0HnJp6Og</recordid><startdate>202310</startdate><enddate>202310</enddate><creator>Shaheen, Nazma</creator><creator>Najar, Fares Z.</creator><creator>Chowdhury, Umar Faruq</creator><creator>Chowdhury, Md. Arko Ayon</creator><creator>Reza, Rifath Nehleen</creator><creator>Halima, Oumma</creator><creator>Foster, Steven B.</creator><creator>Khan, Haseena</creator><creator>Islam, Mohammad Riazul</creator><creator>Ahsan, Nagib</creator><general>Elsevier Inc</general><scope>AAYXX</scope><scope>CITATION</scope><scope>7S9</scope><scope>L.6</scope></search><sort><creationdate>202310</creationdate><title>Muscle proteome profile and potential allergens of premature hilsa shad (Tenualosa ilisha)</title><author>Shaheen, Nazma ; Najar, Fares Z. ; Chowdhury, Umar Faruq ; Chowdhury, Md. Arko Ayon ; Reza, Rifath Nehleen ; Halima, Oumma ; Foster, Steven B. ; Khan, Haseena ; Islam, Mohammad Riazul ; Ahsan, Nagib</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c284t-24608cf4960b6c1340b9b69229b7ba43c28b9643842a1cce94def464be8d3c003</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>allergens</topic><topic>Allergome</topic><topic>applied research</topic><topic>Clupeidae</topic><topic>computer simulation</topic><topic>creatine</topic><topic>creatine kinase</topic><topic>Dietary security</topic><topic>dynein ATPase</topic><topic>Fish</topic><topic>food composition</topic><topic>muscle tissues</topic><topic>muscles</topic><topic>myosin</topic><topic>phosphopyruvate hydratase</topic><topic>proteome</topic><topic>proteomics</topic><topic>Quantitative proteomics</topic><topic>riverine habitat</topic><topic>Tenualosa ilisha</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Shaheen, Nazma</creatorcontrib><creatorcontrib>Najar, Fares Z.</creatorcontrib><creatorcontrib>Chowdhury, Umar Faruq</creatorcontrib><creatorcontrib>Chowdhury, Md. Arko Ayon</creatorcontrib><creatorcontrib>Reza, Rifath Nehleen</creatorcontrib><creatorcontrib>Halima, Oumma</creatorcontrib><creatorcontrib>Foster, Steven B.</creatorcontrib><creatorcontrib>Khan, Haseena</creatorcontrib><creatorcontrib>Islam, Mohammad Riazul</creatorcontrib><creatorcontrib>Ahsan, Nagib</creatorcontrib><collection>CrossRef</collection><collection>AGRICOLA</collection><collection>AGRICOLA - Academic</collection><jtitle>Journal of food composition and analysis</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Shaheen, Nazma</au><au>Najar, Fares Z.</au><au>Chowdhury, Umar Faruq</au><au>Chowdhury, Md. Arko Ayon</au><au>Reza, Rifath Nehleen</au><au>Halima, Oumma</au><au>Foster, Steven B.</au><au>Khan, Haseena</au><au>Islam, Mohammad Riazul</au><au>Ahsan, Nagib</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Muscle proteome profile and potential allergens of premature hilsa shad (Tenualosa ilisha)</atitle><jtitle>Journal of food composition and analysis</jtitle><date>2023-10</date><risdate>2023</risdate><volume>123</volume><spage>105641</spage><pages>105641-</pages><artnum>105641</artnum><issn>0889-1575</issn><abstract>In this study, for the first time, we profile the actual protein sequences of known and potential allergens of premature hilsa shad (Tenualosa ilisha), an economically important fish of South Asian countries. Proteomics was employed to dissect the muscle tissue proteome collected from the riverine habitat hilsa samples. We successfully identified and quantified >600 proteins wherein many known allergens such as parvalbumins, beta-enolase, and creatine kinases were identified as abundant proteins in muscle tissue. Label-free quantitative proteomics revealed significant differences in the abundance of myosin, dynein, gamma-enolase, creatine kinase B-type, and collagens between the two hilsa samples. In silico analysis determined the allergen potential of these proteins. Notably, our findings indicate that many well-characterized allergen proteins are developmentally regulated in the muscle tissue. Thus, the profiling of a muscle tissue proteome map would further facilitate fundamental and applied research on hilsa fish and greatly improve our understanding of the crucial issue of hilsa customers' nutritional safety.
[Display omitted]
•First muscle tissue proteome map of Hilsa shad, an economically important fish.•Comparative allergome of immature Hilsa shad.•Actual peptide sequences of Hilsa allergen proteins were identified.•Some allergen proteins are developmentally regulated.</abstract><pub>Elsevier Inc</pub><doi>10.1016/j.jfca.2023.105641</doi></addata></record> |
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subjects | allergens Allergome applied research Clupeidae computer simulation creatine creatine kinase Dietary security dynein ATPase Fish food composition muscle tissues muscles myosin phosphopyruvate hydratase proteome proteomics Quantitative proteomics riverine habitat Tenualosa ilisha |
title | Muscle proteome profile and potential allergens of premature hilsa shad (Tenualosa ilisha) |
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