Complete genome sequence of Bacillus cereus 2-6A, a marine exopolysaccharide-producing bacterium isolated from deep-sea hydrothermal sediment of the Pacific Ocean
Bacillus cereus 2-6A, was isolated from the sediments in the hydrothermal area of the Pacific Ocean with a water depth of 2628 m. In this study, we report the whole genome sequence of strain 2-6A and analyze that to understand its metabolic capacities and biosynthesis potential of natural products....
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Veröffentlicht in: | Marine genomics 2023-06, Vol.69, p.101029-101029, Article 101029 |
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creator | Zou, Xuan Suo, Chuan-Lei Geng, Xiao-Mei Li, Chun-Yang Fu, Hui-Hui Zhang, Yi Wang, Peng Sun, Mei-Ling |
description | Bacillus cereus 2-6A, was isolated from the sediments in the hydrothermal area of the Pacific Ocean with a water depth of 2628 m. In this study, we report the whole genome sequence of strain 2-6A and analyze that to understand its metabolic capacities and biosynthesis potential of natural products. The genome of strain 2-6A consists of a circular chromosome of 5,191,018 bp with a GC content of 35.3 mol% and two plasmids of 234,719 bp and 411,441 bp, respectively. Genomic data mining reveals that strain 2-6A has several gene clusters involved in exopolysaccharides (EPSs) and polyhydroxyalkanoates (PHAs) production and complex polysaccharides degradation. It also possesses a variety of genes for allowing strain 2-6A to cope with osmotic stress, oxidative stress, heat shock, cold shock and heavy metal stress, which could play a vital role in the adaptability of the strain to hydrothermal environments. Gene clusters for secondary metabolite production, such as lasso peptide and siderophore, are also predicted. Therefore, genome sequencing and data mining provide insights into the molecular mechanisms of Bacillus in adapting to hydrothermal deep ocean environments and can facilitate further experimental exploration. |
doi_str_mv | 10.1016/j.margen.2023.101029 |
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In this study, we report the whole genome sequence of strain 2-6A and analyze that to understand its metabolic capacities and biosynthesis potential of natural products. The genome of strain 2-6A consists of a circular chromosome of 5,191,018 bp with a GC content of 35.3 mol% and two plasmids of 234,719 bp and 411,441 bp, respectively. Genomic data mining reveals that strain 2-6A has several gene clusters involved in exopolysaccharides (EPSs) and polyhydroxyalkanoates (PHAs) production and complex polysaccharides degradation. It also possesses a variety of genes for allowing strain 2-6A to cope with osmotic stress, oxidative stress, heat shock, cold shock and heavy metal stress, which could play a vital role in the adaptability of the strain to hydrothermal environments. Gene clusters for secondary metabolite production, such as lasso peptide and siderophore, are also predicted. Therefore, genome sequencing and data mining provide insights into the molecular mechanisms of Bacillus in adapting to hydrothermal deep ocean environments and can facilitate further experimental exploration.</description><identifier>ISSN: 1874-7787</identifier><identifier>EISSN: 1876-7478</identifier><identifier>DOI: 10.1016/j.margen.2023.101029</identifier><identifier>PMID: 37100528</identifier><language>eng</language><publisher>Netherlands: Elsevier B.V</publisher><subject>Bacillus - genetics ; Bacillus cereus ; Bacillus cereus - genetics ; Bacillus cereus strain 2-6A ; bacteria ; biosynthesis ; Carbohydrate degradation ; Chromosome Mapping ; chromosomes ; cold stress ; Deep-sea hydrothermal environment ; Exopolysaccharide production ; exopolysaccharides ; genes ; Genome, Bacterial ; Genomic analysis ; genomics ; heat stress ; heavy metals ; nucleotide sequences ; osmotic stress ; oxidative stress ; Pacific Ocean ; peptides ; plasmids ; polyhydroxyalkanoates ; secondary metabolites ; sediments ; siderophores ; Stress resistance</subject><ispartof>Marine genomics, 2023-06, Vol.69, p.101029-101029, Article 101029</ispartof><rights>2023</rights><rights>Copyright © 2023. 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In this study, we report the whole genome sequence of strain 2-6A and analyze that to understand its metabolic capacities and biosynthesis potential of natural products. The genome of strain 2-6A consists of a circular chromosome of 5,191,018 bp with a GC content of 35.3 mol% and two plasmids of 234,719 bp and 411,441 bp, respectively. Genomic data mining reveals that strain 2-6A has several gene clusters involved in exopolysaccharides (EPSs) and polyhydroxyalkanoates (PHAs) production and complex polysaccharides degradation. It also possesses a variety of genes for allowing strain 2-6A to cope with osmotic stress, oxidative stress, heat shock, cold shock and heavy metal stress, which could play a vital role in the adaptability of the strain to hydrothermal environments. Gene clusters for secondary metabolite production, such as lasso peptide and siderophore, are also predicted. Therefore, genome sequencing and data mining provide insights into the molecular mechanisms of Bacillus in adapting to hydrothermal deep ocean environments and can facilitate further experimental exploration.</description><subject>Bacillus - genetics</subject><subject>Bacillus cereus</subject><subject>Bacillus cereus - genetics</subject><subject>Bacillus cereus strain 2-6A</subject><subject>bacteria</subject><subject>biosynthesis</subject><subject>Carbohydrate degradation</subject><subject>Chromosome Mapping</subject><subject>chromosomes</subject><subject>cold stress</subject><subject>Deep-sea hydrothermal environment</subject><subject>Exopolysaccharide production</subject><subject>exopolysaccharides</subject><subject>genes</subject><subject>Genome, Bacterial</subject><subject>Genomic analysis</subject><subject>genomics</subject><subject>heat stress</subject><subject>heavy metals</subject><subject>nucleotide sequences</subject><subject>osmotic stress</subject><subject>oxidative stress</subject><subject>Pacific Ocean</subject><subject>peptides</subject><subject>plasmids</subject><subject>polyhydroxyalkanoates</subject><subject>secondary metabolites</subject><subject>sediments</subject><subject>siderophores</subject><subject>Stress resistance</subject><issn>1874-7787</issn><issn>1876-7478</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkc1u1DAUhSMEoqXwBgh5yYIM_ovtbJDKiD-pUrsoa8uxrzseJXGwE8S8Dk9ahxSWdHWto3PvJ59TVa8J3hFMxPvjbjDpDsYdxZStEqbtk-qcKClqyaV6-ufNaymVPKte5HzEWFCp8PPqjEmCcUPVefV7H4ephxlQORUHQBl-LDBaQNGjj8aGvl8yspCgDFqLy3fIoAIOIyD4FafYn7Kx9lAUB_WUoltsGO9QZ-wMKSwDCjn2ZgaHfIoDcgBTncGgw8mlOB8gDaYvUBcGGOcVWjR0U8A-WHRtwYwvq2fe9BlePcyL6vvnT7f7r_XV9Zdv-8ur2jLO57oD0hAGxHFuG8-gaz3uCPGtVEZ1HiyT4LhohGgdc6zFXlLMG0olI4A5ZxfV2-1u-UXJIM96CNlC35sR4pI1Iw2TgskWP2qlCou2bYhSxco3q00x5wReTymUAE-aYL0WqY96K1KvReqtyLL25oGwdAO4f0t_myuGD5sBSiQ_AySdbViLcyGBnbWL4f-Ee-cWsmo</recordid><startdate>202306</startdate><enddate>202306</enddate><creator>Zou, Xuan</creator><creator>Suo, Chuan-Lei</creator><creator>Geng, Xiao-Mei</creator><creator>Li, Chun-Yang</creator><creator>Fu, Hui-Hui</creator><creator>Zhang, Yi</creator><creator>Wang, Peng</creator><creator>Sun, Mei-Ling</creator><general>Elsevier B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>7S9</scope><scope>L.6</scope></search><sort><creationdate>202306</creationdate><title>Complete genome sequence of Bacillus cereus 2-6A, a marine exopolysaccharide-producing bacterium isolated from deep-sea hydrothermal sediment of the Pacific Ocean</title><author>Zou, Xuan ; Suo, Chuan-Lei ; Geng, Xiao-Mei ; Li, Chun-Yang ; Fu, Hui-Hui ; Zhang, Yi ; Wang, Peng ; Sun, Mei-Ling</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c344t-be1513e1d44c5f3eb9f0b11f978a8bfec37ed465669d3d390f7204522731e0443</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Bacillus - genetics</topic><topic>Bacillus cereus</topic><topic>Bacillus cereus - genetics</topic><topic>Bacillus cereus strain 2-6A</topic><topic>bacteria</topic><topic>biosynthesis</topic><topic>Carbohydrate degradation</topic><topic>Chromosome Mapping</topic><topic>chromosomes</topic><topic>cold stress</topic><topic>Deep-sea hydrothermal environment</topic><topic>Exopolysaccharide production</topic><topic>exopolysaccharides</topic><topic>genes</topic><topic>Genome, Bacterial</topic><topic>Genomic analysis</topic><topic>genomics</topic><topic>heat stress</topic><topic>heavy metals</topic><topic>nucleotide sequences</topic><topic>osmotic stress</topic><topic>oxidative stress</topic><topic>Pacific Ocean</topic><topic>peptides</topic><topic>plasmids</topic><topic>polyhydroxyalkanoates</topic><topic>secondary metabolites</topic><topic>sediments</topic><topic>siderophores</topic><topic>Stress resistance</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zou, Xuan</creatorcontrib><creatorcontrib>Suo, Chuan-Lei</creatorcontrib><creatorcontrib>Geng, Xiao-Mei</creatorcontrib><creatorcontrib>Li, Chun-Yang</creatorcontrib><creatorcontrib>Fu, Hui-Hui</creatorcontrib><creatorcontrib>Zhang, Yi</creatorcontrib><creatorcontrib>Wang, Peng</creatorcontrib><creatorcontrib>Sun, Mei-Ling</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>AGRICOLA</collection><collection>AGRICOLA - Academic</collection><jtitle>Marine genomics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zou, Xuan</au><au>Suo, Chuan-Lei</au><au>Geng, Xiao-Mei</au><au>Li, Chun-Yang</au><au>Fu, Hui-Hui</au><au>Zhang, Yi</au><au>Wang, Peng</au><au>Sun, Mei-Ling</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Complete genome sequence of Bacillus cereus 2-6A, a marine exopolysaccharide-producing bacterium isolated from deep-sea hydrothermal sediment of the Pacific Ocean</atitle><jtitle>Marine genomics</jtitle><addtitle>Mar Genomics</addtitle><date>2023-06</date><risdate>2023</risdate><volume>69</volume><spage>101029</spage><epage>101029</epage><pages>101029-101029</pages><artnum>101029</artnum><issn>1874-7787</issn><eissn>1876-7478</eissn><abstract>Bacillus cereus 2-6A, was isolated from the sediments in the hydrothermal area of the Pacific Ocean with a water depth of 2628 m. In this study, we report the whole genome sequence of strain 2-6A and analyze that to understand its metabolic capacities and biosynthesis potential of natural products. The genome of strain 2-6A consists of a circular chromosome of 5,191,018 bp with a GC content of 35.3 mol% and two plasmids of 234,719 bp and 411,441 bp, respectively. Genomic data mining reveals that strain 2-6A has several gene clusters involved in exopolysaccharides (EPSs) and polyhydroxyalkanoates (PHAs) production and complex polysaccharides degradation. It also possesses a variety of genes for allowing strain 2-6A to cope with osmotic stress, oxidative stress, heat shock, cold shock and heavy metal stress, which could play a vital role in the adaptability of the strain to hydrothermal environments. Gene clusters for secondary metabolite production, such as lasso peptide and siderophore, are also predicted. Therefore, genome sequencing and data mining provide insights into the molecular mechanisms of Bacillus in adapting to hydrothermal deep ocean environments and can facilitate further experimental exploration.</abstract><cop>Netherlands</cop><pub>Elsevier B.V</pub><pmid>37100528</pmid><doi>10.1016/j.margen.2023.101029</doi><tpages>1</tpages></addata></record> |
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subjects | Bacillus - genetics Bacillus cereus Bacillus cereus - genetics Bacillus cereus strain 2-6A bacteria biosynthesis Carbohydrate degradation Chromosome Mapping chromosomes cold stress Deep-sea hydrothermal environment Exopolysaccharide production exopolysaccharides genes Genome, Bacterial Genomic analysis genomics heat stress heavy metals nucleotide sequences osmotic stress oxidative stress Pacific Ocean peptides plasmids polyhydroxyalkanoates secondary metabolites sediments siderophores Stress resistance |
title | Complete genome sequence of Bacillus cereus 2-6A, a marine exopolysaccharide-producing bacterium isolated from deep-sea hydrothermal sediment of the Pacific Ocean |
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