Novel DNA methylation biomarkers for early diagnosis of oral tongue squamous cell carcinoma (OTSCC)
Oral tongue squamous cell carcinoma (OTSCC) is the most common malignancy type among males across the world. However, analysis of molecular markers could be useful in detecting the early-stage OTSCC, which would allow optimal clinical treatments and prolong the survival rate of patients consequently...
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Veröffentlicht in: | Journal of applied genetics 2024-09, Vol.65 (3), p.541-548 |
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description | Oral tongue squamous cell carcinoma (OTSCC) is the most common malignancy type among males across the world. However, analysis of molecular markers could be useful in detecting the early-stage OTSCC, which would allow optimal clinical treatments and prolong the survival rate of patients consequently. The study has the objective of detecting the role of salivary biomarkers based on gene promoter hypermethylation. Sample data from 45 OTSCC and normal groups were analyzed to exhibit the methylation levels of salivary biomarkers (
TRH
,
FHIT
,
MGMT
,
p16
, and
RASSF1A
). The specificity and sensitivity analysis of methylation biomarkers was conducted in addition to the receiver operating characteristic (ROC) curve for both early-stage and advanced OTSCC stages. Quantitative data findings showed the perfect sensitivity and specificity for
TRH
,
MGMT
,
p16
, and
RASSF1A
with 100%, and > 90%, respectively. In addition, the results indicated an inefficient area under curves (> 0.7) for these biomarkers to detect the OTSCC. There were no significant differences observed between
TRH
and
FHIT
and
p16
and
MGMT
based on the Wilcoxon signed-rank test. The methylation statuses of genes
TRH
,
RASSF1A
,
p16
, and
MGMT
might become utilized as predictive biomarkers for clinical application in early diagnosis of OTSCC and noninvasive oral cancer screening. |
doi_str_mv | 10.1007/s13353-024-00830-x |
format | Article |
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TRH
,
FHIT
,
MGMT
,
p16
, and
RASSF1A
). The specificity and sensitivity analysis of methylation biomarkers was conducted in addition to the receiver operating characteristic (ROC) curve for both early-stage and advanced OTSCC stages. Quantitative data findings showed the perfect sensitivity and specificity for
TRH
,
MGMT
,
p16
, and
RASSF1A
with 100%, and > 90%, respectively. In addition, the results indicated an inefficient area under curves (> 0.7) for these biomarkers to detect the OTSCC. There were no significant differences observed between
TRH
and
FHIT
and
p16
and
MGMT
based on the Wilcoxon signed-rank test. The methylation statuses of genes
TRH
,
RASSF1A
,
p16
, and
MGMT
might become utilized as predictive biomarkers for clinical application in early diagnosis of OTSCC and noninvasive oral cancer screening.</description><identifier>ISSN: 1234-1983</identifier><identifier>EISSN: 2190-3883</identifier><identifier>DOI: 10.1007/s13353-024-00830-x</identifier><identifier>PMID: 38438717</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Animal Genetics and Genomics ; Biomarkers ; Biomedical and Life Sciences ; Cancer ; Cancer screening ; Diagnosis ; DNA methylation ; early diagnosis ; genes ; Human Genetics ; Human Genetics • Original Paper ; Life Sciences ; Malignancy ; Medical screening ; Microbial Genetics and Genomics ; mouth neoplasms ; Oral carcinoma ; Plant Genetics and Genomics ; Rank tests ; Sensitivity analysis ; Squamous cell carcinoma ; Survival ; survival rate ; Tongue</subject><ispartof>Journal of applied genetics, 2024-09, Vol.65 (3), p.541-548</ispartof><rights>The Author(s), under exclusive licence to Institute of Plant Genetics Polish Academy of Sciences 2024. corrected publication 2024. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.</rights><rights>2024. The Author(s), under exclusive licence to Institute of Plant Genetics Polish Academy of Sciences.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c408t-23607cd1cfc121ad1aa57bffb503477e2f1cac15e48007e80b122cbd551aac5a3</citedby><cites>FETCH-LOGICAL-c408t-23607cd1cfc121ad1aa57bffb503477e2f1cac15e48007e80b122cbd551aac5a3</cites><orcidid>0000-0001-9679-6928 ; 0009-0004-4832-1521</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s13353-024-00830-x$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s13353-024-00830-x$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38438717$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Alafaria, Hayat Ali Abdullah</creatorcontrib><creatorcontrib>Jalal, Areej Saud</creatorcontrib><title>Novel DNA methylation biomarkers for early diagnosis of oral tongue squamous cell carcinoma (OTSCC)</title><title>Journal of applied genetics</title><addtitle>J Appl Genetics</addtitle><addtitle>J Appl Genet</addtitle><description>Oral tongue squamous cell carcinoma (OTSCC) is the most common malignancy type among males across the world. However, analysis of molecular markers could be useful in detecting the early-stage OTSCC, which would allow optimal clinical treatments and prolong the survival rate of patients consequently. The study has the objective of detecting the role of salivary biomarkers based on gene promoter hypermethylation. Sample data from 45 OTSCC and normal groups were analyzed to exhibit the methylation levels of salivary biomarkers (
TRH
,
FHIT
,
MGMT
,
p16
, and
RASSF1A
). The specificity and sensitivity analysis of methylation biomarkers was conducted in addition to the receiver operating characteristic (ROC) curve for both early-stage and advanced OTSCC stages. Quantitative data findings showed the perfect sensitivity and specificity for
TRH
,
MGMT
,
p16
, and
RASSF1A
with 100%, and > 90%, respectively. In addition, the results indicated an inefficient area under curves (> 0.7) for these biomarkers to detect the OTSCC. There were no significant differences observed between
TRH
and
FHIT
and
p16
and
MGMT
based on the Wilcoxon signed-rank test. The methylation statuses of genes
TRH
,
RASSF1A
,
p16
, and
MGMT
might become utilized as predictive biomarkers for clinical application in early diagnosis of OTSCC and noninvasive oral cancer screening.</description><subject>Animal Genetics and Genomics</subject><subject>Biomarkers</subject><subject>Biomedical and Life Sciences</subject><subject>Cancer</subject><subject>Cancer screening</subject><subject>Diagnosis</subject><subject>DNA methylation</subject><subject>early diagnosis</subject><subject>genes</subject><subject>Human Genetics</subject><subject>Human Genetics • Original Paper</subject><subject>Life Sciences</subject><subject>Malignancy</subject><subject>Medical screening</subject><subject>Microbial Genetics and Genomics</subject><subject>mouth neoplasms</subject><subject>Oral carcinoma</subject><subject>Plant Genetics and Genomics</subject><subject>Rank tests</subject><subject>Sensitivity analysis</subject><subject>Squamous cell carcinoma</subject><subject>Survival</subject><subject>survival rate</subject><subject>Tongue</subject><issn>1234-1983</issn><issn>2190-3883</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><recordid>eNp9kTtPxDAQhC0EguPxByiQJRooAmtvjJ0SHU8JQQHUluM4RyCJwU4Q9-8xHA-JgmoLfzOe3SFkm8EBA5CHkSEKzIDnGYBCyN6WyISzAjJUCpfJhHHMM1YoXCPrMT4CoMolXyVraaKSTE6IvfavrqUn18e0c8PDvDVD43taNr4z4cmFSGsfqDOhndOqMbPexyZSX1MfTEsH389GR-PLaDo_Rmpd21Jrgm36pKd7N3e30-n-JlmpTRvd1tfcIPdnp3fTi-zq5vxyenyV2RzUkHE8AmkrZmvLODMVM0bIsq5LAZhL6XjNrLFMuFyl7Z2CknFuy0qIRFphcIPsLXyfg38ZXRx018SPSKZ3KZ1GJlDyAo4gobt_0Ec_hj6l0wgFFFxyKRLFF5QNPsbgav0cmnSXuWagPyrQiwp0qkB_VqDfkmjny3osO1f9SL5vngBcADE99TMXfv_-x_Ydi62Rsw</recordid><startdate>20240901</startdate><enddate>20240901</enddate><creator>Alafaria, Hayat Ali Abdullah</creator><creator>Jalal, Areej Saud</creator><general>Springer Berlin Heidelberg</general><general>Springer Nature B.V</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7S9</scope><scope>L.6</scope><orcidid>https://orcid.org/0000-0001-9679-6928</orcidid><orcidid>https://orcid.org/0009-0004-4832-1521</orcidid></search><sort><creationdate>20240901</creationdate><title>Novel DNA methylation biomarkers for early diagnosis of oral tongue squamous cell carcinoma (OTSCC)</title><author>Alafaria, Hayat Ali Abdullah ; Jalal, Areej Saud</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c408t-23607cd1cfc121ad1aa57bffb503477e2f1cac15e48007e80b122cbd551aac5a3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Animal Genetics and Genomics</topic><topic>Biomarkers</topic><topic>Biomedical and Life Sciences</topic><topic>Cancer</topic><topic>Cancer screening</topic><topic>Diagnosis</topic><topic>DNA methylation</topic><topic>early diagnosis</topic><topic>genes</topic><topic>Human Genetics</topic><topic>Human Genetics • Original Paper</topic><topic>Life Sciences</topic><topic>Malignancy</topic><topic>Medical screening</topic><topic>Microbial Genetics and Genomics</topic><topic>mouth neoplasms</topic><topic>Oral carcinoma</topic><topic>Plant Genetics and Genomics</topic><topic>Rank tests</topic><topic>Sensitivity analysis</topic><topic>Squamous cell carcinoma</topic><topic>Survival</topic><topic>survival rate</topic><topic>Tongue</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Alafaria, Hayat Ali Abdullah</creatorcontrib><creatorcontrib>Jalal, Areej Saud</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>AGRICOLA</collection><collection>AGRICOLA - Academic</collection><jtitle>Journal of applied genetics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Alafaria, Hayat Ali Abdullah</au><au>Jalal, Areej Saud</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Novel DNA methylation biomarkers for early diagnosis of oral tongue squamous cell carcinoma (OTSCC)</atitle><jtitle>Journal of applied genetics</jtitle><stitle>J Appl Genetics</stitle><addtitle>J Appl Genet</addtitle><date>2024-09-01</date><risdate>2024</risdate><volume>65</volume><issue>3</issue><spage>541</spage><epage>548</epage><pages>541-548</pages><issn>1234-1983</issn><eissn>2190-3883</eissn><abstract>Oral tongue squamous cell carcinoma (OTSCC) is the most common malignancy type among males across the world. However, analysis of molecular markers could be useful in detecting the early-stage OTSCC, which would allow optimal clinical treatments and prolong the survival rate of patients consequently. The study has the objective of detecting the role of salivary biomarkers based on gene promoter hypermethylation. Sample data from 45 OTSCC and normal groups were analyzed to exhibit the methylation levels of salivary biomarkers (
TRH
,
FHIT
,
MGMT
,
p16
, and
RASSF1A
). The specificity and sensitivity analysis of methylation biomarkers was conducted in addition to the receiver operating characteristic (ROC) curve for both early-stage and advanced OTSCC stages. Quantitative data findings showed the perfect sensitivity and specificity for
TRH
,
MGMT
,
p16
, and
RASSF1A
with 100%, and > 90%, respectively. In addition, the results indicated an inefficient area under curves (> 0.7) for these biomarkers to detect the OTSCC. There were no significant differences observed between
TRH
and
FHIT
and
p16
and
MGMT
based on the Wilcoxon signed-rank test. The methylation statuses of genes
TRH
,
RASSF1A
,
p16
, and
MGMT
might become utilized as predictive biomarkers for clinical application in early diagnosis of OTSCC and noninvasive oral cancer screening.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><pmid>38438717</pmid><doi>10.1007/s13353-024-00830-x</doi><tpages>8</tpages><orcidid>https://orcid.org/0000-0001-9679-6928</orcidid><orcidid>https://orcid.org/0009-0004-4832-1521</orcidid></addata></record> |
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subjects | Animal Genetics and Genomics Biomarkers Biomedical and Life Sciences Cancer Cancer screening Diagnosis DNA methylation early diagnosis genes Human Genetics Human Genetics • Original Paper Life Sciences Malignancy Medical screening Microbial Genetics and Genomics mouth neoplasms Oral carcinoma Plant Genetics and Genomics Rank tests Sensitivity analysis Squamous cell carcinoma Survival survival rate Tongue |
title | Novel DNA methylation biomarkers for early diagnosis of oral tongue squamous cell carcinoma (OTSCC) |
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