Employment of pqqE gene as molecular marker for the traceability of Gram negative phosphate solubilizing bacteria associated to plants
Insoluble phosphorous compounds solubilization by soil bacteria is of great relevance since it puts available the phosphorus to be used by plants. The production of organic acids is the main microbiological mechanism by which insoluble inorganic phosphorus compounds are solubilized. In Gram negative...
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| Veröffentlicht in: | Current genetics 2024-12, Vol.70 (1), p.12-12, Article 12 |
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| creator | Anzuay, María Soledad Chiatti, Mario Hernán Intelangelo, Ariana Belén Ludueña, Liliana Mercedes Viso, Natalia Pin Angelini, Jorge Guillermo Taurian, Tania |
| description | Insoluble phosphorous compounds solubilization by soil bacteria is of great relevance since it puts available the phosphorus to be used by plants. The production of organic acids is the main microbiological mechanism by which insoluble inorganic phosphorus compounds are solubilized. In Gram negative bacteria, gluconic acid is synthesized by the activity of the holoenzyme glucose dehydrogenase-pyrroloquinoline quinine named GDH-PQQ. The use of marker genes is a very useful tool to evaluate the persistence of the introduced bacteria and allow to follow-up the effect of biotic and abiotic factors on these beneficial microorganisms in the soil. In previous studies we detected the presence of the
pqq
E gene in a great percentage of both non-culturable and culturable native soil bacteria. The objective of this study was to analyze the phylogeny of the sequence of
pqq
E gene and its potential for the study of phosphate solubilizing bacteria from pure and mixed bacterial cultures and rhizospheric soil samples. For this, the presence of the
pqq
E gene in the genome of phosphate solubilizing bacteria that belong to several bacteria was determined by PCR. Also, this gene was analyzed from mixed bacterial cultures and rhizospheric soil associated to peanut plants inoculated or not with phosphate solubilizing bacteria. For this, degenerate primers designed from several bacterial genera and specific primers for the genus
Pseudomonas
spp., designed in this study, were used. DNA template used from simple or mixed bacterial cultures and from rhizospheric soil samples was obtained using two different DNA extraction techniques. Results indicated that
pqq
E gene amplification product was found in the genome of all Gram negative phosphate solubilizing bacteria analyzed. It was possible to detect this gene in the DNA obtained from mixed cultures where these bacteria grew in interaction with other microorganisms and in that obtained from rhizospheric soil samples inoculated or not with these bacteria. The phylogenetic analysis indicated that
pqq
E gene is a conserved gene within related genera. In conclusion,
pqq
E gene could be a potential marker for the study of phosphate solubilizing bacterial populations. |
| doi_str_mv | 10.1007/s00294-024-01296-4 |
| format | Article |
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pqq
E gene in a great percentage of both non-culturable and culturable native soil bacteria. The objective of this study was to analyze the phylogeny of the sequence of
pqq
E gene and its potential for the study of phosphate solubilizing bacteria from pure and mixed bacterial cultures and rhizospheric soil samples. For this, the presence of the
pqq
E gene in the genome of phosphate solubilizing bacteria that belong to several bacteria was determined by PCR. Also, this gene was analyzed from mixed bacterial cultures and rhizospheric soil associated to peanut plants inoculated or not with phosphate solubilizing bacteria. For this, degenerate primers designed from several bacterial genera and specific primers for the genus
Pseudomonas
spp., designed in this study, were used. DNA template used from simple or mixed bacterial cultures and from rhizospheric soil samples was obtained using two different DNA extraction techniques. Results indicated that
pqq
E gene amplification product was found in the genome of all Gram negative phosphate solubilizing bacteria analyzed. It was possible to detect this gene in the DNA obtained from mixed cultures where these bacteria grew in interaction with other microorganisms and in that obtained from rhizospheric soil samples inoculated or not with these bacteria. The phylogenetic analysis indicated that
pqq
E gene is a conserved gene within related genera. In conclusion,
pqq
E gene could be a potential marker for the study of phosphate solubilizing bacterial populations.</description><identifier>ISSN: 0172-8083</identifier><identifier>ISSN: 1432-0983</identifier><identifier>EISSN: 1432-0983</identifier><identifier>DOI: 10.1007/s00294-024-01296-4</identifier><identifier>PMID: 39093429</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Abiotic factors ; Acidic soils ; Bacteria ; Biochemistry ; Biomarkers ; Biomedical and Life Sciences ; Cell Biology ; Chemical synthesis ; Deoxyribonucleic acid ; DNA ; Gene amplification ; genes ; Genetic Markers ; Genomes ; Genomic analysis ; genus ; Gluconic acid ; glucose ; Glucose dehydrogenase ; Gram-negative bacteria ; Gram-Negative Bacteria - classification ; Gram-Negative Bacteria - genetics ; Gram-Negative Bacteria - isolation & purification ; inorganic phosphorus ; Life Sciences ; Microbial Genetics and Genomics ; Microbiology ; Microorganisms ; Nucleotide sequence ; Organic acids ; Organic phosphorus ; Organic soils ; Original Article ; peanuts ; Phosphate ; Phosphates ; Phosphates - metabolism ; Phosphorus ; Phosphorus compounds ; Phylogeny ; Plant Sciences ; Plants - microbiology ; Population studies ; Proteomics ; Pseudomonas ; Quinine ; Rhizosphere ; Rhizosphere microorganisms ; soil ; Soil analysis ; Soil bacteria ; Soil conservation ; Soil Microbiology ; Soil microorganisms ; Soils ; Solubility ; Solubilization ; traceability</subject><ispartof>Current genetics, 2024-12, Vol.70 (1), p.12-12, Article 12</ispartof><rights>The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature 2024 Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.</rights><rights>2024. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.</rights><rights>Copyright Springer Nature B.V. Dec 2024</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c289t-c1e12595f15d36c4182415cc49763804a1739fc6ea8837ffa45e61f0cfc44e53</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00294-024-01296-4$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00294-024-01296-4$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/39093429$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Anzuay, María Soledad</creatorcontrib><creatorcontrib>Chiatti, Mario Hernán</creatorcontrib><creatorcontrib>Intelangelo, Ariana Belén</creatorcontrib><creatorcontrib>Ludueña, Liliana Mercedes</creatorcontrib><creatorcontrib>Viso, Natalia Pin</creatorcontrib><creatorcontrib>Angelini, Jorge Guillermo</creatorcontrib><creatorcontrib>Taurian, Tania</creatorcontrib><title>Employment of pqqE gene as molecular marker for the traceability of Gram negative phosphate solubilizing bacteria associated to plants</title><title>Current genetics</title><addtitle>Curr Genet</addtitle><addtitle>Curr Genet</addtitle><description>Insoluble phosphorous compounds solubilization by soil bacteria is of great relevance since it puts available the phosphorus to be used by plants. The production of organic acids is the main microbiological mechanism by which insoluble inorganic phosphorus compounds are solubilized. In Gram negative bacteria, gluconic acid is synthesized by the activity of the holoenzyme glucose dehydrogenase-pyrroloquinoline quinine named GDH-PQQ. The use of marker genes is a very useful tool to evaluate the persistence of the introduced bacteria and allow to follow-up the effect of biotic and abiotic factors on these beneficial microorganisms in the soil. In previous studies we detected the presence of the
pqq
E gene in a great percentage of both non-culturable and culturable native soil bacteria. The objective of this study was to analyze the phylogeny of the sequence of
pqq
E gene and its potential for the study of phosphate solubilizing bacteria from pure and mixed bacterial cultures and rhizospheric soil samples. For this, the presence of the
pqq
E gene in the genome of phosphate solubilizing bacteria that belong to several bacteria was determined by PCR. Also, this gene was analyzed from mixed bacterial cultures and rhizospheric soil associated to peanut plants inoculated or not with phosphate solubilizing bacteria. For this, degenerate primers designed from several bacterial genera and specific primers for the genus
Pseudomonas
spp., designed in this study, were used. DNA template used from simple or mixed bacterial cultures and from rhizospheric soil samples was obtained using two different DNA extraction techniques. Results indicated that
pqq
E gene amplification product was found in the genome of all Gram negative phosphate solubilizing bacteria analyzed. It was possible to detect this gene in the DNA obtained from mixed cultures where these bacteria grew in interaction with other microorganisms and in that obtained from rhizospheric soil samples inoculated or not with these bacteria. The phylogenetic analysis indicated that
pqq
E gene is a conserved gene within related genera. In conclusion,
pqq
E gene could be a potential marker for the study of phosphate solubilizing bacterial populations.</description><subject>Abiotic factors</subject><subject>Acidic soils</subject><subject>Bacteria</subject><subject>Biochemistry</subject><subject>Biomarkers</subject><subject>Biomedical and Life Sciences</subject><subject>Cell Biology</subject><subject>Chemical synthesis</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>Gene amplification</subject><subject>genes</subject><subject>Genetic Markers</subject><subject>Genomes</subject><subject>Genomic analysis</subject><subject>genus</subject><subject>Gluconic acid</subject><subject>glucose</subject><subject>Glucose dehydrogenase</subject><subject>Gram-negative bacteria</subject><subject>Gram-Negative Bacteria - classification</subject><subject>Gram-Negative Bacteria - genetics</subject><subject>Gram-Negative Bacteria - isolation & purification</subject><subject>inorganic phosphorus</subject><subject>Life Sciences</subject><subject>Microbial Genetics and Genomics</subject><subject>Microbiology</subject><subject>Microorganisms</subject><subject>Nucleotide sequence</subject><subject>Organic acids</subject><subject>Organic phosphorus</subject><subject>Organic soils</subject><subject>Original Article</subject><subject>peanuts</subject><subject>Phosphate</subject><subject>Phosphates</subject><subject>Phosphates - metabolism</subject><subject>Phosphorus</subject><subject>Phosphorus compounds</subject><subject>Phylogeny</subject><subject>Plant Sciences</subject><subject>Plants - microbiology</subject><subject>Population studies</subject><subject>Proteomics</subject><subject>Pseudomonas</subject><subject>Quinine</subject><subject>Rhizosphere</subject><subject>Rhizosphere microorganisms</subject><subject>soil</subject><subject>Soil analysis</subject><subject>Soil bacteria</subject><subject>Soil conservation</subject><subject>Soil Microbiology</subject><subject>Soil microorganisms</subject><subject>Soils</subject><subject>Solubility</subject><subject>Solubilization</subject><subject>traceability</subject><issn>0172-8083</issn><issn>1432-0983</issn><issn>1432-0983</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkctu2zAQRYmiQeI8fqCLgkA33ajhUyKXReAmAQxkkz1B00NbriTKJFXA-YB8d-g4bYEs2gUxizn3cmYuQp8o-UYJaa4TIUyLirDyKNN1JT6gGRWcVUQr_hHNCG1YpYjiZ-g8pS0plNLNKTrjmmgumJ6h53k_dmHfw5Bx8Hjc7eZ4DQNgm3AfOnBTZyPubfwJEfsQcd4AztE6sMu2a_P-oLqNtscDrG1ufwEeNyGNG5sBp9BNB-qpHdZ4aV2G2NrinIJrS3-Fc8BjZ4ecLtGJt12Cq7d6gR5_zB9v7qrFw-39zfdF5crkuXIUKJNaeipXvHaCKiaodE7opuaKCEsbrr2rwSrFG--tkFBTT5x3QoDkF-jr0XaMYTdByqZvk4OuzABhSoZTyRtWTPX_UaIaLqXSvKBf3qHbMMWh7PFKCVZTWheKHSkXQ0oRvBljWw67N5SYQ57mmKcpeZrXPI0oos9v1tOyh9Ufye8AC8CPQCqtYQ3x79__sH0BNNmr-A</recordid><startdate>20241201</startdate><enddate>20241201</enddate><creator>Anzuay, María Soledad</creator><creator>Chiatti, Mario Hernán</creator><creator>Intelangelo, Ariana Belén</creator><creator>Ludueña, Liliana Mercedes</creator><creator>Viso, Natalia Pin</creator><creator>Angelini, Jorge Guillermo</creator><creator>Taurian, Tania</creator><general>Springer Berlin Heidelberg</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7SS</scope><scope>7TK</scope><scope>7TM</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>K9.</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><scope>7S9</scope><scope>L.6</scope></search><sort><creationdate>20241201</creationdate><title>Employment of pqqE gene as molecular marker for the traceability of Gram negative phosphate solubilizing bacteria associated to plants</title><author>Anzuay, María Soledad ; Chiatti, Mario Hernán ; Intelangelo, Ariana Belén ; Ludueña, Liliana Mercedes ; Viso, Natalia Pin ; Angelini, Jorge Guillermo ; Taurian, Tania</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c289t-c1e12595f15d36c4182415cc49763804a1739fc6ea8837ffa45e61f0cfc44e53</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Abiotic factors</topic><topic>Acidic soils</topic><topic>Bacteria</topic><topic>Biochemistry</topic><topic>Biomarkers</topic><topic>Biomedical and Life Sciences</topic><topic>Cell Biology</topic><topic>Chemical synthesis</topic><topic>Deoxyribonucleic acid</topic><topic>DNA</topic><topic>Gene amplification</topic><topic>genes</topic><topic>Genetic Markers</topic><topic>Genomes</topic><topic>Genomic analysis</topic><topic>genus</topic><topic>Gluconic acid</topic><topic>glucose</topic><topic>Glucose dehydrogenase</topic><topic>Gram-negative bacteria</topic><topic>Gram-Negative Bacteria - classification</topic><topic>Gram-Negative Bacteria - genetics</topic><topic>Gram-Negative Bacteria - isolation & purification</topic><topic>inorganic phosphorus</topic><topic>Life Sciences</topic><topic>Microbial Genetics and Genomics</topic><topic>Microbiology</topic><topic>Microorganisms</topic><topic>Nucleotide sequence</topic><topic>Organic acids</topic><topic>Organic phosphorus</topic><topic>Organic soils</topic><topic>Original Article</topic><topic>peanuts</topic><topic>Phosphate</topic><topic>Phosphates</topic><topic>Phosphates - metabolism</topic><topic>Phosphorus</topic><topic>Phosphorus compounds</topic><topic>Phylogeny</topic><topic>Plant Sciences</topic><topic>Plants - microbiology</topic><topic>Population studies</topic><topic>Proteomics</topic><topic>Pseudomonas</topic><topic>Quinine</topic><topic>Rhizosphere</topic><topic>Rhizosphere microorganisms</topic><topic>soil</topic><topic>Soil analysis</topic><topic>Soil bacteria</topic><topic>Soil conservation</topic><topic>Soil Microbiology</topic><topic>Soil microorganisms</topic><topic>Soils</topic><topic>Solubility</topic><topic>Solubilization</topic><topic>traceability</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Anzuay, María Soledad</creatorcontrib><creatorcontrib>Chiatti, Mario Hernán</creatorcontrib><creatorcontrib>Intelangelo, Ariana Belén</creatorcontrib><creatorcontrib>Ludueña, Liliana Mercedes</creatorcontrib><creatorcontrib>Viso, Natalia Pin</creatorcontrib><creatorcontrib>Angelini, Jorge Guillermo</creatorcontrib><creatorcontrib>Taurian, Tania</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>AGRICOLA</collection><collection>AGRICOLA - Academic</collection><jtitle>Current genetics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Anzuay, María Soledad</au><au>Chiatti, Mario Hernán</au><au>Intelangelo, Ariana Belén</au><au>Ludueña, Liliana Mercedes</au><au>Viso, Natalia Pin</au><au>Angelini, Jorge Guillermo</au><au>Taurian, Tania</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Employment of pqqE gene as molecular marker for the traceability of Gram negative phosphate solubilizing bacteria associated to plants</atitle><jtitle>Current genetics</jtitle><stitle>Curr Genet</stitle><addtitle>Curr Genet</addtitle><date>2024-12-01</date><risdate>2024</risdate><volume>70</volume><issue>1</issue><spage>12</spage><epage>12</epage><pages>12-12</pages><artnum>12</artnum><issn>0172-8083</issn><issn>1432-0983</issn><eissn>1432-0983</eissn><abstract>Insoluble phosphorous compounds solubilization by soil bacteria is of great relevance since it puts available the phosphorus to be used by plants. The production of organic acids is the main microbiological mechanism by which insoluble inorganic phosphorus compounds are solubilized. In Gram negative bacteria, gluconic acid is synthesized by the activity of the holoenzyme glucose dehydrogenase-pyrroloquinoline quinine named GDH-PQQ. The use of marker genes is a very useful tool to evaluate the persistence of the introduced bacteria and allow to follow-up the effect of biotic and abiotic factors on these beneficial microorganisms in the soil. In previous studies we detected the presence of the
pqq
E gene in a great percentage of both non-culturable and culturable native soil bacteria. The objective of this study was to analyze the phylogeny of the sequence of
pqq
E gene and its potential for the study of phosphate solubilizing bacteria from pure and mixed bacterial cultures and rhizospheric soil samples. For this, the presence of the
pqq
E gene in the genome of phosphate solubilizing bacteria that belong to several bacteria was determined by PCR. Also, this gene was analyzed from mixed bacterial cultures and rhizospheric soil associated to peanut plants inoculated or not with phosphate solubilizing bacteria. For this, degenerate primers designed from several bacterial genera and specific primers for the genus
Pseudomonas
spp., designed in this study, were used. DNA template used from simple or mixed bacterial cultures and from rhizospheric soil samples was obtained using two different DNA extraction techniques. Results indicated that
pqq
E gene amplification product was found in the genome of all Gram negative phosphate solubilizing bacteria analyzed. It was possible to detect this gene in the DNA obtained from mixed cultures where these bacteria grew in interaction with other microorganisms and in that obtained from rhizospheric soil samples inoculated or not with these bacteria. The phylogenetic analysis indicated that
pqq
E gene is a conserved gene within related genera. In conclusion,
pqq
E gene could be a potential marker for the study of phosphate solubilizing bacterial populations.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><pmid>39093429</pmid><doi>10.1007/s00294-024-01296-4</doi><tpages>1</tpages></addata></record> |
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| subjects | Abiotic factors Acidic soils Bacteria Biochemistry Biomarkers Biomedical and Life Sciences Cell Biology Chemical synthesis Deoxyribonucleic acid DNA Gene amplification genes Genetic Markers Genomes Genomic analysis genus Gluconic acid glucose Glucose dehydrogenase Gram-negative bacteria Gram-Negative Bacteria - classification Gram-Negative Bacteria - genetics Gram-Negative Bacteria - isolation & purification inorganic phosphorus Life Sciences Microbial Genetics and Genomics Microbiology Microorganisms Nucleotide sequence Organic acids Organic phosphorus Organic soils Original Article peanuts Phosphate Phosphates Phosphates - metabolism Phosphorus Phosphorus compounds Phylogeny Plant Sciences Plants - microbiology Population studies Proteomics Pseudomonas Quinine Rhizosphere Rhizosphere microorganisms soil Soil analysis Soil bacteria Soil conservation Soil Microbiology Soil microorganisms Soils Solubility Solubilization traceability |
| title | Employment of pqqE gene as molecular marker for the traceability of Gram negative phosphate solubilizing bacteria associated to plants |
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