Probing the inhibition of MAO-B by chalcones: an integrated approach combining molecular docking, ADME analysis, MD simulation, and MM-PBSA calculations
Context Monoamine oxidase B (MAO-B), an enzyme of significant relevance in the realm of neurodegenerative disorders, has garnered considerable attention as a potential target for therapeutic intervention. Natural compounds known as chalcones have shown potential as MAO-B inhibitors. In this particul...
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Veröffentlicht in: | Journal of molecular modeling 2024-04, Vol.30 (4), p.103-103, Article 103 |
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creator | Jose, Jisna Varughese, Jibin K. Parvez, Mohammad Khalid Mathew, Thomas V. |
description | Context
Monoamine oxidase B (MAO-B), an enzyme of significant relevance in the realm of neurodegenerative disorders, has garnered considerable attention as a potential target for therapeutic intervention. Natural compounds known as chalcones have shown potential as MAO-B inhibitors. In this particular study, we employed a multimodal computational method to evaluate the inhibitory effects of chalcones on MAO-B.
Methods
Molecular docking methods were used to study and assess the complicated binding interactions that occur between chalcones and MAO-B. This extensive analysis provided a valuable and deep understanding of possible binding methods as well as the key residues implicated in the inhibition process. Furthermore, the ADME investigation gave valuable insights into the pharmacokinetic properties of chalcones. This allowed them to be assessed in terms of drug-like attributes. The use of MD simulations has benefited in the research of ligand–protein interactions’ dynamic behaviour and temporal stability. MM-PBSA calculations were also done to estimate the binding free energies and acquire a better knowledge and understanding of the binding affinity between chalcones and MAO-B. Our thorough method gives a thorough knowledge of chalcones’ potential as MAO-B inhibitors, which will be useful for future experimental validation and drug development efforts in the context of neurodegenerative illnesses. |
doi_str_mv | 10.1007/s00894-024-05889-1 |
format | Article |
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Monoamine oxidase B (MAO-B), an enzyme of significant relevance in the realm of neurodegenerative disorders, has garnered considerable attention as a potential target for therapeutic intervention. Natural compounds known as chalcones have shown potential as MAO-B inhibitors. In this particular study, we employed a multimodal computational method to evaluate the inhibitory effects of chalcones on MAO-B.
Methods
Molecular docking methods were used to study and assess the complicated binding interactions that occur between chalcones and MAO-B. This extensive analysis provided a valuable and deep understanding of possible binding methods as well as the key residues implicated in the inhibition process. Furthermore, the ADME investigation gave valuable insights into the pharmacokinetic properties of chalcones. This allowed them to be assessed in terms of drug-like attributes. The use of MD simulations has benefited in the research of ligand–protein interactions’ dynamic behaviour and temporal stability. MM-PBSA calculations were also done to estimate the binding free energies and acquire a better knowledge and understanding of the binding affinity between chalcones and MAO-B. Our thorough method gives a thorough knowledge of chalcones’ potential as MAO-B inhibitors, which will be useful for future experimental validation and drug development efforts in the context of neurodegenerative illnesses.</description><identifier>ISSN: 1610-2940</identifier><identifier>EISSN: 0948-5023</identifier><identifier>DOI: 10.1007/s00894-024-05889-1</identifier><identifier>PMID: 38478122</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>amine oxidase (flavin-containing) ; Binding ; chalcones ; Characterization and Evaluation of Materials ; Chemistry ; Chemistry and Materials Science ; Computer Appl. in Life Sciences ; Computer Applications in Chemistry ; Context ; domain ; drug development ; Dynamic stability ; Inhibitors ; Mathematical analysis ; Molecular docking ; Molecular Medicine ; Original Paper ; pharmacokinetics ; Pharmacology ; Theoretical and Computational Chemistry ; therapeutics</subject><ispartof>Journal of molecular modeling, 2024-04, Vol.30 (4), p.103-103, Article 103</ispartof><rights>The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature 2024. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.</rights><rights>2024. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c408t-321231a9a21e519a96cb2c11ced20c39b8cf2a6f51b2a1536fb34ec7589e46a23</citedby><cites>FETCH-LOGICAL-c408t-321231a9a21e519a96cb2c11ced20c39b8cf2a6f51b2a1536fb34ec7589e46a23</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00894-024-05889-1$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00894-024-05889-1$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38478122$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Jose, Jisna</creatorcontrib><creatorcontrib>Varughese, Jibin K.</creatorcontrib><creatorcontrib>Parvez, Mohammad Khalid</creatorcontrib><creatorcontrib>Mathew, Thomas V.</creatorcontrib><title>Probing the inhibition of MAO-B by chalcones: an integrated approach combining molecular docking, ADME analysis, MD simulation, and MM-PBSA calculations</title><title>Journal of molecular modeling</title><addtitle>J Mol Model</addtitle><addtitle>J Mol Model</addtitle><description>Context
Monoamine oxidase B (MAO-B), an enzyme of significant relevance in the realm of neurodegenerative disorders, has garnered considerable attention as a potential target for therapeutic intervention. Natural compounds known as chalcones have shown potential as MAO-B inhibitors. In this particular study, we employed a multimodal computational method to evaluate the inhibitory effects of chalcones on MAO-B.
Methods
Molecular docking methods were used to study and assess the complicated binding interactions that occur between chalcones and MAO-B. This extensive analysis provided a valuable and deep understanding of possible binding methods as well as the key residues implicated in the inhibition process. Furthermore, the ADME investigation gave valuable insights into the pharmacokinetic properties of chalcones. This allowed them to be assessed in terms of drug-like attributes. The use of MD simulations has benefited in the research of ligand–protein interactions’ dynamic behaviour and temporal stability. MM-PBSA calculations were also done to estimate the binding free energies and acquire a better knowledge and understanding of the binding affinity between chalcones and MAO-B. Our thorough method gives a thorough knowledge of chalcones’ potential as MAO-B inhibitors, which will be useful for future experimental validation and drug development efforts in the context of neurodegenerative illnesses.</description><subject>amine oxidase (flavin-containing)</subject><subject>Binding</subject><subject>chalcones</subject><subject>Characterization and Evaluation of Materials</subject><subject>Chemistry</subject><subject>Chemistry and Materials Science</subject><subject>Computer Appl. in Life Sciences</subject><subject>Computer Applications in Chemistry</subject><subject>Context</subject><subject>domain</subject><subject>drug development</subject><subject>Dynamic stability</subject><subject>Inhibitors</subject><subject>Mathematical analysis</subject><subject>Molecular docking</subject><subject>Molecular Medicine</subject><subject>Original Paper</subject><subject>pharmacokinetics</subject><subject>Pharmacology</subject><subject>Theoretical and Computational Chemistry</subject><subject>therapeutics</subject><issn>1610-2940</issn><issn>0948-5023</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><recordid>eNqFkc1u1DAUhS0EoqPSF2CBLLFhMQH7-ic2u-kvSI1aCVhHjuPMuCTx1E4W8yY8Lp7OABILWFiWfL9zjq4PQq8peU8JKT8kQpTmBYF8hFK6oM_QgmiuCkGAPUcLKikpQHNygs5SeiCEUBBSALxEJ0zxUlGABfpxH0PjxzWeNg77ceMbP_kw4tDhanVXnONmh-3G9DaMLn3EZszQ5NbRTK7FZruNwdgNtmHIJnubIfTOzr2JuA32e35Z4tVldZWFpt8ln5a4usTJDxnZ5yzzoMVVVdyff1lhm3OOg_QKvehMn9zZ8T5F366vvl58Km7vbj5frG4Ly4maCgYUGDXaAHWCaqOlbcBSal0LxDLdKNuBkZ2gDRgqmOwaxp0thdKOSwPsFL07-OZVHmeXpnrwybq-N6MLc6pZFpXAOLD_oqBFSSVTYo--_Qt9CHPMf_BEyVJJQnim4EDZGFKKrqu30Q8m7mpK6n3L9aHlOrdcP7Vc0yx6c7Sem8G1vyW_Os0AOwApj8a1i3-y_2H7EwzksOo</recordid><startdate>20240401</startdate><enddate>20240401</enddate><creator>Jose, Jisna</creator><creator>Varughese, Jibin K.</creator><creator>Parvez, Mohammad Khalid</creator><creator>Mathew, Thomas V.</creator><general>Springer Berlin Heidelberg</general><general>Springer Nature B.V</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>7S9</scope><scope>L.6</scope></search><sort><creationdate>20240401</creationdate><title>Probing the inhibition of MAO-B by chalcones: an integrated approach combining molecular docking, ADME analysis, MD simulation, and MM-PBSA calculations</title><author>Jose, Jisna ; Varughese, Jibin K. ; Parvez, Mohammad Khalid ; Mathew, Thomas V.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c408t-321231a9a21e519a96cb2c11ced20c39b8cf2a6f51b2a1536fb34ec7589e46a23</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>amine oxidase (flavin-containing)</topic><topic>Binding</topic><topic>chalcones</topic><topic>Characterization and Evaluation of Materials</topic><topic>Chemistry</topic><topic>Chemistry and Materials Science</topic><topic>Computer Appl. in Life Sciences</topic><topic>Computer Applications in Chemistry</topic><topic>Context</topic><topic>domain</topic><topic>drug development</topic><topic>Dynamic stability</topic><topic>Inhibitors</topic><topic>Mathematical analysis</topic><topic>Molecular docking</topic><topic>Molecular Medicine</topic><topic>Original Paper</topic><topic>pharmacokinetics</topic><topic>Pharmacology</topic><topic>Theoretical and Computational Chemistry</topic><topic>therapeutics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Jose, Jisna</creatorcontrib><creatorcontrib>Varughese, Jibin K.</creatorcontrib><creatorcontrib>Parvez, Mohammad Khalid</creatorcontrib><creatorcontrib>Mathew, Thomas V.</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>AGRICOLA</collection><collection>AGRICOLA - Academic</collection><jtitle>Journal of molecular modeling</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Jose, Jisna</au><au>Varughese, Jibin K.</au><au>Parvez, Mohammad Khalid</au><au>Mathew, Thomas V.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Probing the inhibition of MAO-B by chalcones: an integrated approach combining molecular docking, ADME analysis, MD simulation, and MM-PBSA calculations</atitle><jtitle>Journal of molecular modeling</jtitle><stitle>J Mol Model</stitle><addtitle>J Mol Model</addtitle><date>2024-04-01</date><risdate>2024</risdate><volume>30</volume><issue>4</issue><spage>103</spage><epage>103</epage><pages>103-103</pages><artnum>103</artnum><issn>1610-2940</issn><eissn>0948-5023</eissn><abstract>Context
Monoamine oxidase B (MAO-B), an enzyme of significant relevance in the realm of neurodegenerative disorders, has garnered considerable attention as a potential target for therapeutic intervention. Natural compounds known as chalcones have shown potential as MAO-B inhibitors. In this particular study, we employed a multimodal computational method to evaluate the inhibitory effects of chalcones on MAO-B.
Methods
Molecular docking methods were used to study and assess the complicated binding interactions that occur between chalcones and MAO-B. This extensive analysis provided a valuable and deep understanding of possible binding methods as well as the key residues implicated in the inhibition process. Furthermore, the ADME investigation gave valuable insights into the pharmacokinetic properties of chalcones. This allowed them to be assessed in terms of drug-like attributes. The use of MD simulations has benefited in the research of ligand–protein interactions’ dynamic behaviour and temporal stability. MM-PBSA calculations were also done to estimate the binding free energies and acquire a better knowledge and understanding of the binding affinity between chalcones and MAO-B. Our thorough method gives a thorough knowledge of chalcones’ potential as MAO-B inhibitors, which will be useful for future experimental validation and drug development efforts in the context of neurodegenerative illnesses.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><pmid>38478122</pmid><doi>10.1007/s00894-024-05889-1</doi><tpages>1</tpages></addata></record> |
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subjects | amine oxidase (flavin-containing) Binding chalcones Characterization and Evaluation of Materials Chemistry Chemistry and Materials Science Computer Appl. in Life Sciences Computer Applications in Chemistry Context domain drug development Dynamic stability Inhibitors Mathematical analysis Molecular docking Molecular Medicine Original Paper pharmacokinetics Pharmacology Theoretical and Computational Chemistry therapeutics |
title | Probing the inhibition of MAO-B by chalcones: an integrated approach combining molecular docking, ADME analysis, MD simulation, and MM-PBSA calculations |
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