Lysinibacillus pinottii sp. nov., a novel species with anti-mosquito and anti-mollusk activity
An isolate of a Gram-positive, strictly aerobic, motile, rod-shaped, endospore forming bacterium was originally isolated from soil when screening and bioprospecting for plant beneficial microorganisms. Phylogenetic analysis of the 16S rRNA gene sequences indicated that this strain was closely relate...
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| Veröffentlicht in: | Antonie van Leeuwenhoek 2024-12, Vol.117 (1), p.100-100, Article 100 |
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| container_title | Antonie van Leeuwenhoek |
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| creator | Dunlap, Christopher A. Johnson, Eric T. Burkett-Cadena, Marleny Cadena, Johanna Muturi, Ephantus J. |
| description | An isolate of a Gram-positive, strictly aerobic, motile, rod-shaped, endospore forming bacterium was originally isolated from soil when screening and bioprospecting for plant beneficial microorganisms. Phylogenetic analysis of the 16S rRNA gene sequences indicated that this strain was closely related to
Lysinibacillus fusiformis
NRRL NRS-350
T
(99.7%) and
Lysinibacillus sphaericus
NRRL B-23268
T
(99.2%). In phenotypic characterization, the novel strain was found to grow between 10 and 45 °C and tolerate up to 8% (w/v) NaCl. Furthermore, the strain grew in media with pH 5 to 10 (optimal growth at pH 7.0). The predominant cellular fatty acids were observed to be iso-C
15: 0
(52.3%), anteiso-C
15: 0
(14.8%), C
16:1
ω7C alcohol (11.2%), and C
16: 0
(9.5%). The cell-wall peptidoglycan contained lysine-aspartic acid, the same as congeners. A draft genome was assembled and the DNA G+C content was determined to be 37.1% (mol content). A phylogenomic analysis on the core genome of the new strain and 5 closest type strains of
Lysinibacillus
revealed this strain formed a distinct monophyletic clade with the nearest neighbor being
Lysinibacillus fusiformis
. DNA–DNA relatedness studies using in silico DNA–DNA hybridizations (DDH) showed this species was below the species threshold of 70%. Based upon the consensus of phylogenetic and phenotypic analyses, we conclude that this strain represents a novel species within the genus
Lysinibacillus
, for which the name
Lysinibacillus pinottii
sp. nov. is proposed, with type strain PB211
T
(= NRRL B-65672
T
, = CCUG 77181
T
). |
| doi_str_mv | 10.1007/s10482-024-01993-7 |
| format | Article |
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Lysinibacillus fusiformis
NRRL NRS-350
T
(99.7%) and
Lysinibacillus sphaericus
NRRL B-23268
T
(99.2%). In phenotypic characterization, the novel strain was found to grow between 10 and 45 °C and tolerate up to 8% (w/v) NaCl. Furthermore, the strain grew in media with pH 5 to 10 (optimal growth at pH 7.0). The predominant cellular fatty acids were observed to be iso-C
15: 0
(52.3%), anteiso-C
15: 0
(14.8%), C
16:1
ω7C alcohol (11.2%), and C
16: 0
(9.5%). The cell-wall peptidoglycan contained lysine-aspartic acid, the same as congeners. A draft genome was assembled and the DNA G+C content was determined to be 37.1% (mol content). A phylogenomic analysis on the core genome of the new strain and 5 closest type strains of
Lysinibacillus
revealed this strain formed a distinct monophyletic clade with the nearest neighbor being
Lysinibacillus fusiformis
. DNA–DNA relatedness studies using in silico DNA–DNA hybridizations (DDH) showed this species was below the species threshold of 70%. Based upon the consensus of phylogenetic and phenotypic analyses, we conclude that this strain represents a novel species within the genus
Lysinibacillus
, for which the name
Lysinibacillus pinottii
sp. nov. is proposed, with type strain PB211
T
(= NRRL B-65672
T
, = CCUG 77181
T
).</description><identifier>ISSN: 0003-6072</identifier><identifier>ISSN: 1572-9699</identifier><identifier>EISSN: 1572-9699</identifier><identifier>DOI: 10.1007/s10482-024-01993-7</identifier><identifier>PMID: 39001997</identifier><language>eng</language><publisher>Cham: Springer International Publishing</publisher><subject>Aerobic microorganisms ; alcohols ; Animals ; Aspartic acid ; Bacillaceae - classification ; Bacillaceae - genetics ; Bacillaceae - isolation & purification ; bacteria ; Bacterial Typing Techniques ; Base Composition ; Biomedical and Life Sciences ; Bioprospecting ; Cell Wall - chemistry ; computer simulation ; Congeners ; Deoxyribonucleic acid ; DNA ; DNA, Bacterial - genetics ; endospores ; Fatty Acids - analysis ; Gene sequencing ; genes ; Genome, Bacterial ; Genomes ; Genomic analysis ; genus ; Life Sciences ; Lysine ; Lysinibacillus ; Lysinibacillus fusiformis ; Lysinibacillus sphaericus ; Medical Microbiology ; Microbiology ; Microorganisms ; Mollusks ; monophyly ; New species ; Original Paper ; Peptidoglycan ; Peptidoglycans ; phenotype ; Phylogenetics ; Phylogeny ; Plant Sciences ; RNA, Ribosomal, 16S - genetics ; rRNA 16S ; Sequence Analysis, DNA ; Sodium chloride ; soil ; Soil analysis ; Soil bacteria ; Soil Microbiology ; Soil microorganisms ; Soil Science & Conservation ; species ; Strain analysis</subject><ispartof>Antonie van Leeuwenhoek, 2024-12, Vol.117 (1), p.100-100, Article 100</ispartof><rights>This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply 2024</rights><rights>2024. This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply.</rights><rights>This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply 2024.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c359t-d5ed88b2936e540ce5a3b7a7f8ef8005896b53f60942323ed5be3165e775165f3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s10482-024-01993-7$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s10482-024-01993-7$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/39001997$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Dunlap, Christopher A.</creatorcontrib><creatorcontrib>Johnson, Eric T.</creatorcontrib><creatorcontrib>Burkett-Cadena, Marleny</creatorcontrib><creatorcontrib>Cadena, Johanna</creatorcontrib><creatorcontrib>Muturi, Ephantus J.</creatorcontrib><title>Lysinibacillus pinottii sp. nov., a novel species with anti-mosquito and anti-mollusk activity</title><title>Antonie van Leeuwenhoek</title><addtitle>Antonie van Leeuwenhoek</addtitle><addtitle>Antonie Van Leeuwenhoek</addtitle><description>An isolate of a Gram-positive, strictly aerobic, motile, rod-shaped, endospore forming bacterium was originally isolated from soil when screening and bioprospecting for plant beneficial microorganisms. Phylogenetic analysis of the 16S rRNA gene sequences indicated that this strain was closely related to
Lysinibacillus fusiformis
NRRL NRS-350
T
(99.7%) and
Lysinibacillus sphaericus
NRRL B-23268
T
(99.2%). In phenotypic characterization, the novel strain was found to grow between 10 and 45 °C and tolerate up to 8% (w/v) NaCl. Furthermore, the strain grew in media with pH 5 to 10 (optimal growth at pH 7.0). The predominant cellular fatty acids were observed to be iso-C
15: 0
(52.3%), anteiso-C
15: 0
(14.8%), C
16:1
ω7C alcohol (11.2%), and C
16: 0
(9.5%). The cell-wall peptidoglycan contained lysine-aspartic acid, the same as congeners. A draft genome was assembled and the DNA G+C content was determined to be 37.1% (mol content). A phylogenomic analysis on the core genome of the new strain and 5 closest type strains of
Lysinibacillus
revealed this strain formed a distinct monophyletic clade with the nearest neighbor being
Lysinibacillus fusiformis
. DNA–DNA relatedness studies using in silico DNA–DNA hybridizations (DDH) showed this species was below the species threshold of 70%. Based upon the consensus of phylogenetic and phenotypic analyses, we conclude that this strain represents a novel species within the genus
Lysinibacillus
, for which the name
Lysinibacillus pinottii
sp. nov. is proposed, with type strain PB211
T
(= NRRL B-65672
T
, = CCUG 77181
T
).</description><subject>Aerobic microorganisms</subject><subject>alcohols</subject><subject>Animals</subject><subject>Aspartic acid</subject><subject>Bacillaceae - classification</subject><subject>Bacillaceae - genetics</subject><subject>Bacillaceae - isolation & purification</subject><subject>bacteria</subject><subject>Bacterial Typing Techniques</subject><subject>Base Composition</subject><subject>Biomedical and Life Sciences</subject><subject>Bioprospecting</subject><subject>Cell Wall - chemistry</subject><subject>computer simulation</subject><subject>Congeners</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>DNA, Bacterial - genetics</subject><subject>endospores</subject><subject>Fatty Acids - analysis</subject><subject>Gene sequencing</subject><subject>genes</subject><subject>Genome, Bacterial</subject><subject>Genomes</subject><subject>Genomic analysis</subject><subject>genus</subject><subject>Life Sciences</subject><subject>Lysine</subject><subject>Lysinibacillus</subject><subject>Lysinibacillus fusiformis</subject><subject>Lysinibacillus sphaericus</subject><subject>Medical Microbiology</subject><subject>Microbiology</subject><subject>Microorganisms</subject><subject>Mollusks</subject><subject>monophyly</subject><subject>New species</subject><subject>Original Paper</subject><subject>Peptidoglycan</subject><subject>Peptidoglycans</subject><subject>phenotype</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Plant Sciences</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>rRNA 16S</subject><subject>Sequence Analysis, DNA</subject><subject>Sodium chloride</subject><subject>soil</subject><subject>Soil analysis</subject><subject>Soil bacteria</subject><subject>Soil Microbiology</subject><subject>Soil microorganisms</subject><subject>Soil Science & Conservation</subject><subject>species</subject><subject>Strain analysis</subject><issn>0003-6072</issn><issn>1572-9699</issn><issn>1572-9699</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkU9LxDAQxYMouq5-AQ9S8OLBrJNk0zRHEf_Bghe9GtJ2qtFuuzapst_erF0VPOjpMZPfe2F4hBwwmDAAdeoZTDNOgU8pMK0FVRtkxKTiVKdab5IRAAiaguI7ZNf75zjqNFPbZEdoWDnUiDzMlt41LreFq-veJwvXtCE4l_jFJGnat8lJYleKddxg4dAn7y48JbYJjs5b_9q70Map_NqsUl4SWwT35sJyj2xVtva4v9Yxub-8uDu_prPbq5vzsxkthNSBlhLLLMu5FinKKRQorciVVVWGVQYgM53mUlQp6CkXXGApcxQslaiUjFKJMTkechdd-9qjD2bufIF1bRtse28Ek0KxeD38j4LSWsrsEz36hT63fdfEQwZKcKVFpPhAFV3rfYeVWXRubrulYWBWRZmhKBOLMp9FGRVNh-voPp9j-W35aiYCYgB8fGoesfv5-4_YDz-3nSE</recordid><startdate>20241201</startdate><enddate>20241201</enddate><creator>Dunlap, Christopher A.</creator><creator>Johnson, Eric T.</creator><creator>Burkett-Cadena, Marleny</creator><creator>Cadena, Johanna</creator><creator>Muturi, Ephantus J.</creator><general>Springer International Publishing</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7T7</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>K9.</scope><scope>M7N</scope><scope>P64</scope><scope>7X8</scope><scope>7S9</scope><scope>L.6</scope></search><sort><creationdate>20241201</creationdate><title>Lysinibacillus pinottii sp. nov., a novel species with anti-mosquito and anti-mollusk activity</title><author>Dunlap, Christopher A. ; Johnson, Eric T. ; Burkett-Cadena, Marleny ; Cadena, Johanna ; Muturi, Ephantus J.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c359t-d5ed88b2936e540ce5a3b7a7f8ef8005896b53f60942323ed5be3165e775165f3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Aerobic microorganisms</topic><topic>alcohols</topic><topic>Animals</topic><topic>Aspartic acid</topic><topic>Bacillaceae - classification</topic><topic>Bacillaceae - genetics</topic><topic>Bacillaceae - isolation & purification</topic><topic>bacteria</topic><topic>Bacterial Typing Techniques</topic><topic>Base Composition</topic><topic>Biomedical and Life Sciences</topic><topic>Bioprospecting</topic><topic>Cell Wall - chemistry</topic><topic>computer simulation</topic><topic>Congeners</topic><topic>Deoxyribonucleic acid</topic><topic>DNA</topic><topic>DNA, Bacterial - genetics</topic><topic>endospores</topic><topic>Fatty Acids - analysis</topic><topic>Gene sequencing</topic><topic>genes</topic><topic>Genome, Bacterial</topic><topic>Genomes</topic><topic>Genomic analysis</topic><topic>genus</topic><topic>Life Sciences</topic><topic>Lysine</topic><topic>Lysinibacillus</topic><topic>Lysinibacillus fusiformis</topic><topic>Lysinibacillus sphaericus</topic><topic>Medical Microbiology</topic><topic>Microbiology</topic><topic>Microorganisms</topic><topic>Mollusks</topic><topic>monophyly</topic><topic>New species</topic><topic>Original Paper</topic><topic>Peptidoglycan</topic><topic>Peptidoglycans</topic><topic>phenotype</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Plant Sciences</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>rRNA 16S</topic><topic>Sequence Analysis, DNA</topic><topic>Sodium chloride</topic><topic>soil</topic><topic>Soil analysis</topic><topic>Soil bacteria</topic><topic>Soil Microbiology</topic><topic>Soil microorganisms</topic><topic>Soil Science & Conservation</topic><topic>species</topic><topic>Strain analysis</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Dunlap, Christopher A.</creatorcontrib><creatorcontrib>Johnson, Eric T.</creatorcontrib><creatorcontrib>Burkett-Cadena, Marleny</creatorcontrib><creatorcontrib>Cadena, Johanna</creatorcontrib><creatorcontrib>Muturi, Ephantus J.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>MEDLINE - Academic</collection><collection>AGRICOLA</collection><collection>AGRICOLA - Academic</collection><jtitle>Antonie van Leeuwenhoek</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Dunlap, Christopher A.</au><au>Johnson, Eric T.</au><au>Burkett-Cadena, Marleny</au><au>Cadena, Johanna</au><au>Muturi, Ephantus J.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Lysinibacillus pinottii sp. nov., a novel species with anti-mosquito and anti-mollusk activity</atitle><jtitle>Antonie van Leeuwenhoek</jtitle><stitle>Antonie van Leeuwenhoek</stitle><addtitle>Antonie Van Leeuwenhoek</addtitle><date>2024-12-01</date><risdate>2024</risdate><volume>117</volume><issue>1</issue><spage>100</spage><epage>100</epage><pages>100-100</pages><artnum>100</artnum><issn>0003-6072</issn><issn>1572-9699</issn><eissn>1572-9699</eissn><abstract>An isolate of a Gram-positive, strictly aerobic, motile, rod-shaped, endospore forming bacterium was originally isolated from soil when screening and bioprospecting for plant beneficial microorganisms. Phylogenetic analysis of the 16S rRNA gene sequences indicated that this strain was closely related to
Lysinibacillus fusiformis
NRRL NRS-350
T
(99.7%) and
Lysinibacillus sphaericus
NRRL B-23268
T
(99.2%). In phenotypic characterization, the novel strain was found to grow between 10 and 45 °C and tolerate up to 8% (w/v) NaCl. Furthermore, the strain grew in media with pH 5 to 10 (optimal growth at pH 7.0). The predominant cellular fatty acids were observed to be iso-C
15: 0
(52.3%), anteiso-C
15: 0
(14.8%), C
16:1
ω7C alcohol (11.2%), and C
16: 0
(9.5%). The cell-wall peptidoglycan contained lysine-aspartic acid, the same as congeners. A draft genome was assembled and the DNA G+C content was determined to be 37.1% (mol content). A phylogenomic analysis on the core genome of the new strain and 5 closest type strains of
Lysinibacillus
revealed this strain formed a distinct monophyletic clade with the nearest neighbor being
Lysinibacillus fusiformis
. DNA–DNA relatedness studies using in silico DNA–DNA hybridizations (DDH) showed this species was below the species threshold of 70%. Based upon the consensus of phylogenetic and phenotypic analyses, we conclude that this strain represents a novel species within the genus
Lysinibacillus
, for which the name
Lysinibacillus pinottii
sp. nov. is proposed, with type strain PB211
T
(= NRRL B-65672
T
, = CCUG 77181
T
).</abstract><cop>Cham</cop><pub>Springer International Publishing</pub><pmid>39001997</pmid><doi>10.1007/s10482-024-01993-7</doi><tpages>1</tpages></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 0003-6072 |
| ispartof | Antonie van Leeuwenhoek, 2024-12, Vol.117 (1), p.100-100, Article 100 |
| issn | 0003-6072 1572-9699 1572-9699 |
| language | eng |
| recordid | cdi_proquest_miscellaneous_3153719680 |
| source | MEDLINE; SpringerLink Journals |
| subjects | Aerobic microorganisms alcohols Animals Aspartic acid Bacillaceae - classification Bacillaceae - genetics Bacillaceae - isolation & purification bacteria Bacterial Typing Techniques Base Composition Biomedical and Life Sciences Bioprospecting Cell Wall - chemistry computer simulation Congeners Deoxyribonucleic acid DNA DNA, Bacterial - genetics endospores Fatty Acids - analysis Gene sequencing genes Genome, Bacterial Genomes Genomic analysis genus Life Sciences Lysine Lysinibacillus Lysinibacillus fusiformis Lysinibacillus sphaericus Medical Microbiology Microbiology Microorganisms Mollusks monophyly New species Original Paper Peptidoglycan Peptidoglycans phenotype Phylogenetics Phylogeny Plant Sciences RNA, Ribosomal, 16S - genetics rRNA 16S Sequence Analysis, DNA Sodium chloride soil Soil analysis Soil bacteria Soil Microbiology Soil microorganisms Soil Science & Conservation species Strain analysis |
| title | Lysinibacillus pinottii sp. nov., a novel species with anti-mosquito and anti-mollusk activity |
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