Description of Pseudomarimonas salicorniae sp. nov., Isolated from Salicornia herbacea L. in the Tidal Flat of the Yellow Sea
A Gram-stain-negative, strictly aerobic, non-motile, rod-shaped, designated strain CAU 1642 T , was isolated from a Salicornia herbacea collected from a tidal flat in the Yellow Sea. Strain CAU 1642 T grew optimally at pH 8.0 and 30 °C. The highest 16S rRNA gene sequence similarity was 97.25%, wit...
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| Veröffentlicht in: | Current microbiology 2024-10, Vol.81 (10), p.310-310, Article 310 |
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| creator | Jeong, Jiseon Weerawongwiwat, Veeraya Ahn, Soyeon Lee, Yunjeong Kim, Jong-Hwa Yoon, Jung-Hoon Lee, Jung-Sook Sukhoom, Ampaitip Kim, Wonyong |
| description | A Gram-stain-negative, strictly aerobic, non-motile, rod-shaped, designated strain CAU 1642
T
, was isolated from a
Salicornia herbacea
collected from a tidal flat in the Yellow Sea. Strain CAU 1642
T
grew optimally at pH 8.0 and 30 °C. The highest 16S rRNA gene sequence similarity was 97.25%, with
Pseudomarinomonas arenosa
CAU 1598
T
, and phylogenetic analysis indicated that strain CAU 1642
T
belongs to the genus
Pseudomarinomonas
. The major cellular fatty acids were iso-C
15:0
, iso-C
16:0
, and summed feature 9 (iso-C
17:1
ω
9
c
and/or 10-methyl C
16:0
). Ubiquinone-8 was the major respiratory quinone. The draft genome of strain CAU 1642
T
was 4.5 Mb, with 68.7 mol% of G + C content. The phylogenetic, phenotypic, and chemotaxonomic analysis data reveal strain CAU 1642
T
to be of a novel genus in the family
Lysobacteraceae
, with the proposed name
Pseudomarinomonas salicorniae
sp. nov. with type strain CAU 1642
T
(= KCTC 92084
T
= MCCC 1K07085
T
). |
| doi_str_mv | 10.1007/s00284-024-03657-1 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_3153705959</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>3094045838</sourcerecordid><originalsourceid>FETCH-LOGICAL-c289t-9b23e5ed33dc4040e437868a2b1da96e3469e11b6734116b9859c9e28870f76d3</originalsourceid><addsrcrecordid>eNqFkU1v1DAQhi1ERbeFP8ABWeLCgSy2x59HVGiptFKRWg6cLCeZ0FRJvNhJEQf-O162HxIHOFiW7GfeGfsh5CVna86YeZcZE1ZWTJQFWpmKPyErLkFUzDn-lKwYSKisVvyQHOV8wxgXjvFn5BAcVwI0rMivD5ib1G_nPk40dvRzxqWNY0j9GKeQaQ5D38Q09QFp3q7pFG_Xb-l5jkOYsaVdiiO9fGDoNaY6NBjoZk37ic7XSK_6Ngz0tPC7_N3JVxyG-INeYnhODrowZHxxtx-TL6cfr04-VZuLs_OT95uqEdbNlasFoMIWoG0kkwwlGKttEDVvg9MIUjvkvNYGJOe6dla5xqGw1rDO6BaOyZt97jbF7wvm2Y99bsoYYcK4ZA9cgWHKKfd_lLkygrJgC_r6L_QmLmkqD9lRoI2SwhRK7KkmxZwTdn5bPjekn54zv_Po9x598ej_ePS8FL26i17qEduHkntxBYA9kMvV9A3TY-9_xP4G5humHg</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>3093675427</pqid></control><display><type>article</type><title>Description of Pseudomarimonas salicorniae sp. nov., Isolated from Salicornia herbacea L. in the Tidal Flat of the Yellow Sea</title><source>MEDLINE</source><source>Springer Nature - Complete Springer Journals</source><creator>Jeong, Jiseon ; Weerawongwiwat, Veeraya ; Ahn, Soyeon ; Lee, Yunjeong ; Kim, Jong-Hwa ; Yoon, Jung-Hoon ; Lee, Jung-Sook ; Sukhoom, Ampaitip ; Kim, Wonyong</creator><creatorcontrib>Jeong, Jiseon ; Weerawongwiwat, Veeraya ; Ahn, Soyeon ; Lee, Yunjeong ; Kim, Jong-Hwa ; Yoon, Jung-Hoon ; Lee, Jung-Sook ; Sukhoom, Ampaitip ; Kim, Wonyong</creatorcontrib><description>A Gram-stain-negative, strictly aerobic, non-motile, rod-shaped, designated strain CAU 1642
T
, was isolated from a
Salicornia herbacea
collected from a tidal flat in the Yellow Sea. Strain CAU 1642
T
grew optimally at pH 8.0 and 30 °C. The highest 16S rRNA gene sequence similarity was 97.25%, with
Pseudomarinomonas arenosa
CAU 1598
T
, and phylogenetic analysis indicated that strain CAU 1642
T
belongs to the genus
Pseudomarinomonas
. The major cellular fatty acids were iso-C
15:0
, iso-C
16:0
, and summed feature 9 (iso-C
17:1
ω
9
c
and/or 10-methyl C
16:0
). Ubiquinone-8 was the major respiratory quinone. The draft genome of strain CAU 1642
T
was 4.5 Mb, with 68.7 mol% of G + C content. The phylogenetic, phenotypic, and chemotaxonomic analysis data reveal strain CAU 1642
T
to be of a novel genus in the family
Lysobacteraceae
, with the proposed name
Pseudomarinomonas salicorniae
sp. nov. with type strain CAU 1642
T
(= KCTC 92084
T
= MCCC 1K07085
T
).</description><identifier>ISSN: 0343-8651</identifier><identifier>ISSN: 1432-0991</identifier><identifier>EISSN: 1432-0991</identifier><identifier>DOI: 10.1007/s00284-024-03657-1</identifier><identifier>PMID: 39152363</identifier><language>eng</language><publisher>New York: Springer US</publisher><subject>Bacterial Typing Techniques ; Base Composition ; Biomedical and Life Sciences ; Biotechnology ; chemotaxonomy ; Chenopodiaceae - microbiology ; Coenzyme Q8 ; DNA, Bacterial - genetics ; family ; Fatty acids ; Fatty Acids - analysis ; Fatty Acids - chemistry ; genome ; Genome, Bacterial ; Genomes ; genus ; Life Sciences ; Microbiology ; Microscopy ; Morphology ; new genus ; New species ; Novel Prokaryotic Taxa ; nucleotide sequences ; phenotype ; Phylogenetics ; Phylogeny ; Quinones ; Quinones - analysis ; RNA, Ribosomal, 16S - genetics ; rRNA 16S ; Salicornia europaea ; Salicornia herbacea ; Seawater - microbiology ; Sequence Analysis, DNA ; sequence homology ; Short Communication ; Software ; Strain analysis ; Tidal flats ; Ubiquinone - analogs & derivatives ; Ubiquinone - chemistry ; Yellow Sea</subject><ispartof>Current microbiology, 2024-10, Vol.81 (10), p.310-310, Article 310</ispartof><rights>The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature 2024</rights><rights>2024. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.</rights><rights>The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature 2024.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c289t-9b23e5ed33dc4040e437868a2b1da96e3469e11b6734116b9859c9e28870f76d3</cites><orcidid>0000-0001-9649-3919</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00284-024-03657-1$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00284-024-03657-1$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/39152363$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Jeong, Jiseon</creatorcontrib><creatorcontrib>Weerawongwiwat, Veeraya</creatorcontrib><creatorcontrib>Ahn, Soyeon</creatorcontrib><creatorcontrib>Lee, Yunjeong</creatorcontrib><creatorcontrib>Kim, Jong-Hwa</creatorcontrib><creatorcontrib>Yoon, Jung-Hoon</creatorcontrib><creatorcontrib>Lee, Jung-Sook</creatorcontrib><creatorcontrib>Sukhoom, Ampaitip</creatorcontrib><creatorcontrib>Kim, Wonyong</creatorcontrib><title>Description of Pseudomarimonas salicorniae sp. nov., Isolated from Salicornia herbacea L. in the Tidal Flat of the Yellow Sea</title><title>Current microbiology</title><addtitle>Curr Microbiol</addtitle><addtitle>Curr Microbiol</addtitle><description>A Gram-stain-negative, strictly aerobic, non-motile, rod-shaped, designated strain CAU 1642
T
, was isolated from a
Salicornia herbacea
collected from a tidal flat in the Yellow Sea. Strain CAU 1642
T
grew optimally at pH 8.0 and 30 °C. The highest 16S rRNA gene sequence similarity was 97.25%, with
Pseudomarinomonas arenosa
CAU 1598
T
, and phylogenetic analysis indicated that strain CAU 1642
T
belongs to the genus
Pseudomarinomonas
. The major cellular fatty acids were iso-C
15:0
, iso-C
16:0
, and summed feature 9 (iso-C
17:1
ω
9
c
and/or 10-methyl C
16:0
). Ubiquinone-8 was the major respiratory quinone. The draft genome of strain CAU 1642
T
was 4.5 Mb, with 68.7 mol% of G + C content. The phylogenetic, phenotypic, and chemotaxonomic analysis data reveal strain CAU 1642
T
to be of a novel genus in the family
Lysobacteraceae
, with the proposed name
Pseudomarinomonas salicorniae
sp. nov. with type strain CAU 1642
T
(= KCTC 92084
T
= MCCC 1K07085
T
).</description><subject>Bacterial Typing Techniques</subject><subject>Base Composition</subject><subject>Biomedical and Life Sciences</subject><subject>Biotechnology</subject><subject>chemotaxonomy</subject><subject>Chenopodiaceae - microbiology</subject><subject>Coenzyme Q8</subject><subject>DNA, Bacterial - genetics</subject><subject>family</subject><subject>Fatty acids</subject><subject>Fatty Acids - analysis</subject><subject>Fatty Acids - chemistry</subject><subject>genome</subject><subject>Genome, Bacterial</subject><subject>Genomes</subject><subject>genus</subject><subject>Life Sciences</subject><subject>Microbiology</subject><subject>Microscopy</subject><subject>Morphology</subject><subject>new genus</subject><subject>New species</subject><subject>Novel Prokaryotic Taxa</subject><subject>nucleotide sequences</subject><subject>phenotype</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Quinones</subject><subject>Quinones - analysis</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>rRNA 16S</subject><subject>Salicornia europaea</subject><subject>Salicornia herbacea</subject><subject>Seawater - microbiology</subject><subject>Sequence Analysis, DNA</subject><subject>sequence homology</subject><subject>Short Communication</subject><subject>Software</subject><subject>Strain analysis</subject><subject>Tidal flats</subject><subject>Ubiquinone - analogs & derivatives</subject><subject>Ubiquinone - chemistry</subject><subject>Yellow Sea</subject><issn>0343-8651</issn><issn>1432-0991</issn><issn>1432-0991</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkU1v1DAQhi1ERbeFP8ABWeLCgSy2x59HVGiptFKRWg6cLCeZ0FRJvNhJEQf-O162HxIHOFiW7GfeGfsh5CVna86YeZcZE1ZWTJQFWpmKPyErLkFUzDn-lKwYSKisVvyQHOV8wxgXjvFn5BAcVwI0rMivD5ib1G_nPk40dvRzxqWNY0j9GKeQaQ5D38Q09QFp3q7pFG_Xb-l5jkOYsaVdiiO9fGDoNaY6NBjoZk37ic7XSK_6Ngz0tPC7_N3JVxyG-INeYnhODrowZHxxtx-TL6cfr04-VZuLs_OT95uqEdbNlasFoMIWoG0kkwwlGKttEDVvg9MIUjvkvNYGJOe6dla5xqGw1rDO6BaOyZt97jbF7wvm2Y99bsoYYcK4ZA9cgWHKKfd_lLkygrJgC_r6L_QmLmkqD9lRoI2SwhRK7KkmxZwTdn5bPjekn54zv_Po9x598ej_ePS8FL26i17qEduHkntxBYA9kMvV9A3TY-9_xP4G5humHg</recordid><startdate>20241001</startdate><enddate>20241001</enddate><creator>Jeong, Jiseon</creator><creator>Weerawongwiwat, Veeraya</creator><creator>Ahn, Soyeon</creator><creator>Lee, Yunjeong</creator><creator>Kim, Jong-Hwa</creator><creator>Yoon, Jung-Hoon</creator><creator>Lee, Jung-Sook</creator><creator>Sukhoom, Ampaitip</creator><creator>Kim, Wonyong</creator><general>Springer US</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7T7</scope><scope>7TK</scope><scope>7TM</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>K9.</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><scope>7S9</scope><scope>L.6</scope><orcidid>https://orcid.org/0000-0001-9649-3919</orcidid></search><sort><creationdate>20241001</creationdate><title>Description of Pseudomarimonas salicorniae sp. nov., Isolated from Salicornia herbacea L. in the Tidal Flat of the Yellow Sea</title><author>Jeong, Jiseon ; Weerawongwiwat, Veeraya ; Ahn, Soyeon ; Lee, Yunjeong ; Kim, Jong-Hwa ; Yoon, Jung-Hoon ; Lee, Jung-Sook ; Sukhoom, Ampaitip ; Kim, Wonyong</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c289t-9b23e5ed33dc4040e437868a2b1da96e3469e11b6734116b9859c9e28870f76d3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Bacterial Typing Techniques</topic><topic>Base Composition</topic><topic>Biomedical and Life Sciences</topic><topic>Biotechnology</topic><topic>chemotaxonomy</topic><topic>Chenopodiaceae - microbiology</topic><topic>Coenzyme Q8</topic><topic>DNA, Bacterial - genetics</topic><topic>family</topic><topic>Fatty acids</topic><topic>Fatty Acids - analysis</topic><topic>Fatty Acids - chemistry</topic><topic>genome</topic><topic>Genome, Bacterial</topic><topic>Genomes</topic><topic>genus</topic><topic>Life Sciences</topic><topic>Microbiology</topic><topic>Microscopy</topic><topic>Morphology</topic><topic>new genus</topic><topic>New species</topic><topic>Novel Prokaryotic Taxa</topic><topic>nucleotide sequences</topic><topic>phenotype</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Quinones</topic><topic>Quinones - analysis</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>rRNA 16S</topic><topic>Salicornia europaea</topic><topic>Salicornia herbacea</topic><topic>Seawater - microbiology</topic><topic>Sequence Analysis, DNA</topic><topic>sequence homology</topic><topic>Short Communication</topic><topic>Software</topic><topic>Strain analysis</topic><topic>Tidal flats</topic><topic>Ubiquinone - analogs & derivatives</topic><topic>Ubiquinone - chemistry</topic><topic>Yellow Sea</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Jeong, Jiseon</creatorcontrib><creatorcontrib>Weerawongwiwat, Veeraya</creatorcontrib><creatorcontrib>Ahn, Soyeon</creatorcontrib><creatorcontrib>Lee, Yunjeong</creatorcontrib><creatorcontrib>Kim, Jong-Hwa</creatorcontrib><creatorcontrib>Yoon, Jung-Hoon</creatorcontrib><creatorcontrib>Lee, Jung-Sook</creatorcontrib><creatorcontrib>Sukhoom, Ampaitip</creatorcontrib><creatorcontrib>Kim, Wonyong</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>AGRICOLA</collection><collection>AGRICOLA - Academic</collection><jtitle>Current microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Jeong, Jiseon</au><au>Weerawongwiwat, Veeraya</au><au>Ahn, Soyeon</au><au>Lee, Yunjeong</au><au>Kim, Jong-Hwa</au><au>Yoon, Jung-Hoon</au><au>Lee, Jung-Sook</au><au>Sukhoom, Ampaitip</au><au>Kim, Wonyong</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Description of Pseudomarimonas salicorniae sp. nov., Isolated from Salicornia herbacea L. in the Tidal Flat of the Yellow Sea</atitle><jtitle>Current microbiology</jtitle><stitle>Curr Microbiol</stitle><addtitle>Curr Microbiol</addtitle><date>2024-10-01</date><risdate>2024</risdate><volume>81</volume><issue>10</issue><spage>310</spage><epage>310</epage><pages>310-310</pages><artnum>310</artnum><issn>0343-8651</issn><issn>1432-0991</issn><eissn>1432-0991</eissn><abstract>A Gram-stain-negative, strictly aerobic, non-motile, rod-shaped, designated strain CAU 1642
T
, was isolated from a
Salicornia herbacea
collected from a tidal flat in the Yellow Sea. Strain CAU 1642
T
grew optimally at pH 8.0 and 30 °C. The highest 16S rRNA gene sequence similarity was 97.25%, with
Pseudomarinomonas arenosa
CAU 1598
T
, and phylogenetic analysis indicated that strain CAU 1642
T
belongs to the genus
Pseudomarinomonas
. The major cellular fatty acids were iso-C
15:0
, iso-C
16:0
, and summed feature 9 (iso-C
17:1
ω
9
c
and/or 10-methyl C
16:0
). Ubiquinone-8 was the major respiratory quinone. The draft genome of strain CAU 1642
T
was 4.5 Mb, with 68.7 mol% of G + C content. The phylogenetic, phenotypic, and chemotaxonomic analysis data reveal strain CAU 1642
T
to be of a novel genus in the family
Lysobacteraceae
, with the proposed name
Pseudomarinomonas salicorniae
sp. nov. with type strain CAU 1642
T
(= KCTC 92084
T
= MCCC 1K07085
T
).</abstract><cop>New York</cop><pub>Springer US</pub><pmid>39152363</pmid><doi>10.1007/s00284-024-03657-1</doi><tpages>1</tpages><orcidid>https://orcid.org/0000-0001-9649-3919</orcidid></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 0343-8651 |
| ispartof | Current microbiology, 2024-10, Vol.81 (10), p.310-310, Article 310 |
| issn | 0343-8651 1432-0991 1432-0991 |
| language | eng |
| recordid | cdi_proquest_miscellaneous_3153705959 |
| source | MEDLINE; Springer Nature - Complete Springer Journals |
| subjects | Bacterial Typing Techniques Base Composition Biomedical and Life Sciences Biotechnology chemotaxonomy Chenopodiaceae - microbiology Coenzyme Q8 DNA, Bacterial - genetics family Fatty acids Fatty Acids - analysis Fatty Acids - chemistry genome Genome, Bacterial Genomes genus Life Sciences Microbiology Microscopy Morphology new genus New species Novel Prokaryotic Taxa nucleotide sequences phenotype Phylogenetics Phylogeny Quinones Quinones - analysis RNA, Ribosomal, 16S - genetics rRNA 16S Salicornia europaea Salicornia herbacea Seawater - microbiology Sequence Analysis, DNA sequence homology Short Communication Software Strain analysis Tidal flats Ubiquinone - analogs & derivatives Ubiquinone - chemistry Yellow Sea |
| title | Description of Pseudomarimonas salicorniae sp. nov., Isolated from Salicornia herbacea L. in the Tidal Flat of the Yellow Sea |
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