A close-looped DNAzyme walker with an available catalytic domain for electrochemiluminescent detection of acetamiprid
Traditional DNA walkers face enormous challenges due to limited biostability and reaction kinetics. Herein, we designed a self-driven close-looped DNAzyme walker (cl-DW) with high structural biostability and catalytic activity that enabled rapid electrochemiluminescence (ECL) detection of pesticide...
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Veröffentlicht in: | Food chemistry 2024-11, Vol.458, p.140202, Article 140202 |
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creator | Zhao, Lidan Zhao, Meiling Zhou, Xuemei Yuan, Ruo Zhong, Xia Zhuo, Ying |
description | Traditional DNA walkers face enormous challenges due to limited biostability and reaction kinetics. Herein, we designed a self-driven close-looped DNAzyme walker (cl-DW) with high structural biostability and catalytic activity that enabled rapid electrochemiluminescence (ECL) detection of pesticide residue acetamiprid. Specifically, cl-DW exhibited increasing ability to resist nuclease degradation with a 570-fold longer half-degradation time than that of the single-stranded DNAzyme walker (ss-DW) due to the protected DNA terminal. Furthermore, cl-DW achieved high catalytic activity with a 4.3-fold faster reaction kinetic than that of ss-DW due to the circularized nanostructure of an available catalytic domain. Consequently, we utilized cl-DW as a signal amplifier and tin-based sulfide (SnS2) nanoflowers as ECL emitters to construct an ECL aptasensor, which realized the sensitive detection of acetamiprid with a limit of detection of 0.85 nM. This work provides a reliable approach to exploring DNA walkers with high catalytic activity and better biostability for molecular monitoring.
•An electrochemiluminescence aptasensor was designed for acetamiprid detection.•Spatial folding effect enhanced catalytic activity of close-looped DNAzyme walker.•Close-looped DNAzyme walker had improved structural biostability.•This method had satisfactory results for practical application of small molecule. |
doi_str_mv | 10.1016/j.foodchem.2024.140202 |
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•An electrochemiluminescence aptasensor was designed for acetamiprid detection.•Spatial folding effect enhanced catalytic activity of close-looped DNAzyme walker.•Close-looped DNAzyme walker had improved structural biostability.•This method had satisfactory results for practical application of small molecule.</description><identifier>ISSN: 0308-8146</identifier><identifier>ISSN: 1873-7072</identifier><identifier>EISSN: 1873-7072</identifier><identifier>DOI: 10.1016/j.foodchem.2024.140202</identifier><identifier>PMID: 38954955</identifier><language>eng</language><publisher>England: Elsevier Ltd</publisher><subject>Acetamiprid ; active sites ; Aptamers, Nucleotide - chemistry ; aptasensors ; Biosensing Techniques ; catalytic activity ; Catalytic Domain ; Close-looped DNAzyme walker ; detection limit ; DNA ; DNA, Catalytic - chemistry ; Electrochemical Techniques ; Electrochemiluminescence ; food chemistry ; Limit of Detection ; Luminescent Measurements - methods ; nanoflowers ; Neonicotinoids - analysis ; Neonicotinoids - chemistry ; pesticide residues ; Pesticide Residues - analysis ; Pesticide Residues - chemistry ; reaction kinetics ; SnS2 nanoflowers ; sulfides</subject><ispartof>Food chemistry, 2024-11, Vol.458, p.140202, Article 140202</ispartof><rights>2023</rights><rights>Copyright © 2023. Published by Elsevier Ltd.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c348t-49bfa5c6ec9b6e7171e50e428aa711e9a2b21f8942061efe101f535dd72e6e863</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S0308814624018521$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,776,780,3537,27901,27902,65306</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38954955$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zhao, Lidan</creatorcontrib><creatorcontrib>Zhao, Meiling</creatorcontrib><creatorcontrib>Zhou, Xuemei</creatorcontrib><creatorcontrib>Yuan, Ruo</creatorcontrib><creatorcontrib>Zhong, Xia</creatorcontrib><creatorcontrib>Zhuo, Ying</creatorcontrib><title>A close-looped DNAzyme walker with an available catalytic domain for electrochemiluminescent detection of acetamiprid</title><title>Food chemistry</title><addtitle>Food Chem</addtitle><description>Traditional DNA walkers face enormous challenges due to limited biostability and reaction kinetics. Herein, we designed a self-driven close-looped DNAzyme walker (cl-DW) with high structural biostability and catalytic activity that enabled rapid electrochemiluminescence (ECL) detection of pesticide residue acetamiprid. Specifically, cl-DW exhibited increasing ability to resist nuclease degradation with a 570-fold longer half-degradation time than that of the single-stranded DNAzyme walker (ss-DW) due to the protected DNA terminal. Furthermore, cl-DW achieved high catalytic activity with a 4.3-fold faster reaction kinetic than that of ss-DW due to the circularized nanostructure of an available catalytic domain. Consequently, we utilized cl-DW as a signal amplifier and tin-based sulfide (SnS2) nanoflowers as ECL emitters to construct an ECL aptasensor, which realized the sensitive detection of acetamiprid with a limit of detection of 0.85 nM. This work provides a reliable approach to exploring DNA walkers with high catalytic activity and better biostability for molecular monitoring.
•An electrochemiluminescence aptasensor was designed for acetamiprid detection.•Spatial folding effect enhanced catalytic activity of close-looped DNAzyme walker.•Close-looped DNAzyme walker had improved structural biostability.•This method had satisfactory results for practical application of small molecule.</description><subject>Acetamiprid</subject><subject>active sites</subject><subject>Aptamers, Nucleotide - chemistry</subject><subject>aptasensors</subject><subject>Biosensing Techniques</subject><subject>catalytic activity</subject><subject>Catalytic Domain</subject><subject>Close-looped DNAzyme walker</subject><subject>detection limit</subject><subject>DNA</subject><subject>DNA, Catalytic - chemistry</subject><subject>Electrochemical Techniques</subject><subject>Electrochemiluminescence</subject><subject>food chemistry</subject><subject>Limit of Detection</subject><subject>Luminescent Measurements - methods</subject><subject>nanoflowers</subject><subject>Neonicotinoids - analysis</subject><subject>Neonicotinoids - chemistry</subject><subject>pesticide residues</subject><subject>Pesticide Residues - analysis</subject><subject>Pesticide Residues - chemistry</subject><subject>reaction kinetics</subject><subject>SnS2 nanoflowers</subject><subject>sulfides</subject><issn>0308-8146</issn><issn>1873-7072</issn><issn>1873-7072</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkTtvFDEURi0EIkvgL0QuaWbxa8aejlUIDymCBmrLY18rXjzjxfYkWn49Xm1Cm-oWPvfh7yB0RcmWEjp82G99Ss7ewbxlhIktFaTVF2hDleSdJJK9RBvCieoUFcMFelPKnpDGUPUaXXA19mLs-w1ad9jGVKCLKR3A4U_fd3-PM-AHE39Dxg-h3mGzYHNvQjRTBGxNNfFYg8UuzSYs2KeMIYKtOZ3OCXGdwwLFwlKxg9oeQlpw8thYqGYOhxzcW_TKm1jg3WO9RL8-3_y8_trd_vjy7Xp321kuVO3EOHnT2wHsOA0gqaTQExBMGSMphdGwiVGvRsHIQMFDS8b3vHdOMhhADfwSvT_PPeT0Z4VS9RzaZTGaBdJaNKc9H4TsOXseJQ2TQsjT1OGM2pxKyeB1-9Ns8lFTok929F4_2dEnO_pspzVePe5Ypxnc_7YnHQ34eAaghXIfIOtiAywWXMgtSO1SeG7HP0bfpUs</recordid><startdate>20241115</startdate><enddate>20241115</enddate><creator>Zhao, Lidan</creator><creator>Zhao, Meiling</creator><creator>Zhou, Xuemei</creator><creator>Yuan, Ruo</creator><creator>Zhong, Xia</creator><creator>Zhuo, Ying</creator><general>Elsevier Ltd</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>7S9</scope><scope>L.6</scope></search><sort><creationdate>20241115</creationdate><title>A close-looped DNAzyme walker with an available catalytic domain for electrochemiluminescent detection of acetamiprid</title><author>Zhao, Lidan ; Zhao, Meiling ; Zhou, Xuemei ; Yuan, Ruo ; Zhong, Xia ; Zhuo, Ying</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c348t-49bfa5c6ec9b6e7171e50e428aa711e9a2b21f8942061efe101f535dd72e6e863</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Acetamiprid</topic><topic>active sites</topic><topic>Aptamers, Nucleotide - chemistry</topic><topic>aptasensors</topic><topic>Biosensing Techniques</topic><topic>catalytic activity</topic><topic>Catalytic Domain</topic><topic>Close-looped DNAzyme walker</topic><topic>detection limit</topic><topic>DNA</topic><topic>DNA, Catalytic - chemistry</topic><topic>Electrochemical Techniques</topic><topic>Electrochemiluminescence</topic><topic>food chemistry</topic><topic>Limit of Detection</topic><topic>Luminescent Measurements - methods</topic><topic>nanoflowers</topic><topic>Neonicotinoids - analysis</topic><topic>Neonicotinoids - chemistry</topic><topic>pesticide residues</topic><topic>Pesticide Residues - analysis</topic><topic>Pesticide Residues - chemistry</topic><topic>reaction kinetics</topic><topic>SnS2 nanoflowers</topic><topic>sulfides</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zhao, Lidan</creatorcontrib><creatorcontrib>Zhao, Meiling</creatorcontrib><creatorcontrib>Zhou, Xuemei</creatorcontrib><creatorcontrib>Yuan, Ruo</creatorcontrib><creatorcontrib>Zhong, Xia</creatorcontrib><creatorcontrib>Zhuo, Ying</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>AGRICOLA</collection><collection>AGRICOLA - Academic</collection><jtitle>Food chemistry</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zhao, Lidan</au><au>Zhao, Meiling</au><au>Zhou, Xuemei</au><au>Yuan, Ruo</au><au>Zhong, Xia</au><au>Zhuo, Ying</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A close-looped DNAzyme walker with an available catalytic domain for electrochemiluminescent detection of acetamiprid</atitle><jtitle>Food chemistry</jtitle><addtitle>Food Chem</addtitle><date>2024-11-15</date><risdate>2024</risdate><volume>458</volume><spage>140202</spage><pages>140202-</pages><artnum>140202</artnum><issn>0308-8146</issn><issn>1873-7072</issn><eissn>1873-7072</eissn><abstract>Traditional DNA walkers face enormous challenges due to limited biostability and reaction kinetics. Herein, we designed a self-driven close-looped DNAzyme walker (cl-DW) with high structural biostability and catalytic activity that enabled rapid electrochemiluminescence (ECL) detection of pesticide residue acetamiprid. Specifically, cl-DW exhibited increasing ability to resist nuclease degradation with a 570-fold longer half-degradation time than that of the single-stranded DNAzyme walker (ss-DW) due to the protected DNA terminal. Furthermore, cl-DW achieved high catalytic activity with a 4.3-fold faster reaction kinetic than that of ss-DW due to the circularized nanostructure of an available catalytic domain. Consequently, we utilized cl-DW as a signal amplifier and tin-based sulfide (SnS2) nanoflowers as ECL emitters to construct an ECL aptasensor, which realized the sensitive detection of acetamiprid with a limit of detection of 0.85 nM. This work provides a reliable approach to exploring DNA walkers with high catalytic activity and better biostability for molecular monitoring.
•An electrochemiluminescence aptasensor was designed for acetamiprid detection.•Spatial folding effect enhanced catalytic activity of close-looped DNAzyme walker.•Close-looped DNAzyme walker had improved structural biostability.•This method had satisfactory results for practical application of small molecule.</abstract><cop>England</cop><pub>Elsevier Ltd</pub><pmid>38954955</pmid><doi>10.1016/j.foodchem.2024.140202</doi></addata></record> |
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subjects | Acetamiprid active sites Aptamers, Nucleotide - chemistry aptasensors Biosensing Techniques catalytic activity Catalytic Domain Close-looped DNAzyme walker detection limit DNA DNA, Catalytic - chemistry Electrochemical Techniques Electrochemiluminescence food chemistry Limit of Detection Luminescent Measurements - methods nanoflowers Neonicotinoids - analysis Neonicotinoids - chemistry pesticide residues Pesticide Residues - analysis Pesticide Residues - chemistry reaction kinetics SnS2 nanoflowers sulfides |
title | A close-looped DNAzyme walker with an available catalytic domain for electrochemiluminescent detection of acetamiprid |
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