Application of the molecular dynamics simulation GROMACS in food science

[Display omitted] •The GROMACS molecular dynamics simulation software for food research is summarized.•The advantages and procedure of GROMACS for food research are summarized.•GROMACS provides valuable guidance for studying the properties of food molecules.•GROMACS can be used in food processing an...

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Veröffentlicht in:Food research international 2024-08, Vol.190, p.114653, Article 114653
Hauptverfasser: Yu, Dongping, Li, Haiping, Liu, Yuzi, Yang, Xingqun, Yang, Wei, Fu, Yiran, Zuo, Yi-ao, Huang, Xianya
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container_start_page 114653
container_title Food research international
container_volume 190
creator Yu, Dongping
Li, Haiping
Liu, Yuzi
Yang, Xingqun
Yang, Wei
Fu, Yiran
Zuo, Yi-ao
Huang, Xianya
description [Display omitted] •The GROMACS molecular dynamics simulation software for food research is summarized.•The advantages and procedure of GROMACS for food research are summarized.•GROMACS provides valuable guidance for studying the properties of food molecules.•GROMACS can be used in food processing and food interaction. Food comprises proteins, lipids, sugars and various other molecules that constitute a multicomponent biological system. It is challenging to investigate microscopic changes in food systems solely by performing conventional experiments. Molecular dynamics (MD) simulation serves as a crucial bridge in addressing this research gap. The Groningen Machine for Chemical Simulations (GROMACS) is an open-source, high-performing molecular dynamics simulation software that plays a significant role in food science research owing to its high flexibility and powerful functionality; it has been used to explore the molecular conformations and the mechanisms of interaction between food molecules at the microcosmic level and to analyze their properties and functions. This review presents the workflow of the GROMACS software and emphasizes the recent developments and achievements in its applications in food science research, thus providing important theoretical guidance and technical support for obtaining an in-depth understanding of the properties and functions of food.
doi_str_mv 10.1016/j.foodres.2024.114653
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subjects computer simulation
computer software
Food components
food research
Food science
Food Technology - methods
GROMACS
molecular dynamics
Molecular Dynamics Simulation
Molecular interaction
Software
title Application of the molecular dynamics simulation GROMACS in food science
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