Lectin-Based SP3 Technology Enables N‑Glycoproteomic Analysis of Mouse Oocytes
N-glycosylation is one of the most universal and complex protein post-translational modifications (PTMs), and it is involved in many physiological and pathological activities. Owing to the low abundance of N-glycoproteins, enrichment of N-glycopeptides for mass spectrometry analysis usually requires...
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Veröffentlicht in: | Journal of proteome research 2024-06, Vol.23 (6), p.2137-2147 |
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description | N-glycosylation is one of the most universal and complex protein post-translational modifications (PTMs), and it is involved in many physiological and pathological activities. Owing to the low abundance of N-glycoproteins, enrichment of N-glycopeptides for mass spectrometry analysis usually requires a large amount of peptides. Additionally, oocyte protein N-glycosylation has not been systemically characterized due to the limited sample amount. Here, we developed a glycosylation enrichment method based on lectin and a single-pot, solid-phase-enhanced sample preparation (SP3) technology, termed lectin-based SP3 technology (LectinSP3). LectinSP3 immobilized lectin on the SP3 beads for N-glycopeptide enrichment. It could identify over 1100 N-glycosylation sites and 600 N-glycoproteins from 10 μg of mouse testis peptides. Furthermore, using the LectinSP3 method, we characterized the N-glycoproteome of 1000 mouse oocytes in three replicates and identified a total of 363 N-glycosylation sites from 215 N-glycoproteins. Bioinformatics analysis revealed that these oocyte N-glycoproteins were mainly enriched in cell adhesion, fertilization, and sperm–egg recognition. Overall, the LectinSP3 method has all procedures performed in one tube, using magnetic beads. It is suitable for analysis of a low amount of samples and is expected to be easily adaptable for automation. In addition, our mouse oocyte protein N-glycosylation profiling could help further characterize the regulation of oocyte functions. |
doi_str_mv | 10.1021/acs.jproteome.4c00089 |
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Owing to the low abundance of N-glycoproteins, enrichment of N-glycopeptides for mass spectrometry analysis usually requires a large amount of peptides. Additionally, oocyte protein N-glycosylation has not been systemically characterized due to the limited sample amount. Here, we developed a glycosylation enrichment method based on lectin and a single-pot, solid-phase-enhanced sample preparation (SP3) technology, termed lectin-based SP3 technology (LectinSP3). LectinSP3 immobilized lectin on the SP3 beads for N-glycopeptide enrichment. It could identify over 1100 N-glycosylation sites and 600 N-glycoproteins from 10 μg of mouse testis peptides. Furthermore, using the LectinSP3 method, we characterized the N-glycoproteome of 1000 mouse oocytes in three replicates and identified a total of 363 N-glycosylation sites from 215 N-glycoproteins. Bioinformatics analysis revealed that these oocyte N-glycoproteins were mainly enriched in cell adhesion, fertilization, and sperm–egg recognition. Overall, the LectinSP3 method has all procedures performed in one tube, using magnetic beads. It is suitable for analysis of a low amount of samples and is expected to be easily adaptable for automation. In addition, our mouse oocyte protein N-glycosylation profiling could help further characterize the regulation of oocyte functions.</description><identifier>ISSN: 1535-3893</identifier><identifier>ISSN: 1535-3907</identifier><identifier>EISSN: 1535-3907</identifier><identifier>DOI: 10.1021/acs.jproteome.4c00089</identifier><identifier>PMID: 38787631</identifier><language>eng</language><publisher>United States: American Chemical Society</publisher><subject>automation ; bioinformatics ; cell adhesion ; glycoproteins ; glycoproteomics ; glycosylation ; lectins ; magnetism ; mass spectrometry ; mice ; oocytes ; peptides ; proteome ; testes</subject><ispartof>Journal of proteome research, 2024-06, Vol.23 (6), p.2137-2147</ispartof><rights>2024 American Chemical Society</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-a332t-cd441e340e67b36cd920aaa1eb4b4886ef7fab85d8e249a8b3152793267b353b3</cites><orcidid>0000-0002-0475-5705</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://pubs.acs.org/doi/pdf/10.1021/acs.jproteome.4c00089$$EPDF$$P50$$Gacs$$H</linktopdf><linktohtml>$$Uhttps://pubs.acs.org/doi/10.1021/acs.jproteome.4c00089$$EHTML$$P50$$Gacs$$H</linktohtml><link.rule.ids>314,776,780,2752,27053,27901,27902,56713,56763</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38787631$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Huo, Zian</creatorcontrib><creatorcontrib>Tu, Haixia</creatorcontrib><creatorcontrib>Ren, Jie</creatorcontrib><creatorcontrib>Zhang, Xiangzheng</creatorcontrib><creatorcontrib>Qi, Yaling</creatorcontrib><creatorcontrib>Situ, Chenghao</creatorcontrib><creatorcontrib>Li, Yan</creatorcontrib><creatorcontrib>Guo, Yueshuai</creatorcontrib><creatorcontrib>Guo, Xuejiang</creatorcontrib><creatorcontrib>Zhu, Hui</creatorcontrib><title>Lectin-Based SP3 Technology Enables N‑Glycoproteomic Analysis of Mouse Oocytes</title><title>Journal of proteome research</title><addtitle>J. Proteome Res</addtitle><description>N-glycosylation is one of the most universal and complex protein post-translational modifications (PTMs), and it is involved in many physiological and pathological activities. Owing to the low abundance of N-glycoproteins, enrichment of N-glycopeptides for mass spectrometry analysis usually requires a large amount of peptides. Additionally, oocyte protein N-glycosylation has not been systemically characterized due to the limited sample amount. Here, we developed a glycosylation enrichment method based on lectin and a single-pot, solid-phase-enhanced sample preparation (SP3) technology, termed lectin-based SP3 technology (LectinSP3). LectinSP3 immobilized lectin on the SP3 beads for N-glycopeptide enrichment. It could identify over 1100 N-glycosylation sites and 600 N-glycoproteins from 10 μg of mouse testis peptides. Furthermore, using the LectinSP3 method, we characterized the N-glycoproteome of 1000 mouse oocytes in three replicates and identified a total of 363 N-glycosylation sites from 215 N-glycoproteins. Bioinformatics analysis revealed that these oocyte N-glycoproteins were mainly enriched in cell adhesion, fertilization, and sperm–egg recognition. Overall, the LectinSP3 method has all procedures performed in one tube, using magnetic beads. It is suitable for analysis of a low amount of samples and is expected to be easily adaptable for automation. In addition, our mouse oocyte protein N-glycosylation profiling could help further characterize the regulation of oocyte functions.</description><subject>automation</subject><subject>bioinformatics</subject><subject>cell adhesion</subject><subject>glycoproteins</subject><subject>glycoproteomics</subject><subject>glycosylation</subject><subject>lectins</subject><subject>magnetism</subject><subject>mass spectrometry</subject><subject>mice</subject><subject>oocytes</subject><subject>peptides</subject><subject>proteome</subject><subject>testes</subject><issn>1535-3893</issn><issn>1535-3907</issn><issn>1535-3907</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><recordid>eNqFkMFOg0AQhjdGY2v1ETQcvVB3GWCXYzW1mlTbxHomyzIoDbCVhQM3X8FX9EncWtprTzOH7_9n8hFyzeiYUY_dSWXG602tG9Qljn1FKRXRCRmyAAIXIspP97uIYEAujFlTygJO4ZwMQHDBQ2BDspyjavLKvZcGU-dtCc4K1WelC_3ROdNKJgUa5_X3-2dWdEr393LlTCpZdCY3js6cF90adBZadQ2aS3KWycLgVT9H5P1xunp4cueL2fPDZO5KAK9xVer7DMGnGPIEQpVGHpVSMkz8xBcixIxnMhFBKtDzIykSYIHHI_C2eAAJjMjtrtf-9NWiaeIyNwqLQlZo_4ktDyEL_Cg6jtKQghXCmUWDHapqbUyNWbyp81LWXcxovPUeW-_xwXvce7e5m_5Em5SYHlJ70RZgO-A_r9va-jNHSv8A3oCThg</recordid><startdate>20240607</startdate><enddate>20240607</enddate><creator>Huo, Zian</creator><creator>Tu, Haixia</creator><creator>Ren, Jie</creator><creator>Zhang, Xiangzheng</creator><creator>Qi, Yaling</creator><creator>Situ, Chenghao</creator><creator>Li, Yan</creator><creator>Guo, Yueshuai</creator><creator>Guo, Xuejiang</creator><creator>Zhu, Hui</creator><general>American Chemical Society</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>7S9</scope><scope>L.6</scope><orcidid>https://orcid.org/0000-0002-0475-5705</orcidid></search><sort><creationdate>20240607</creationdate><title>Lectin-Based SP3 Technology Enables N‑Glycoproteomic Analysis of Mouse Oocytes</title><author>Huo, Zian ; Tu, Haixia ; Ren, Jie ; Zhang, Xiangzheng ; Qi, Yaling ; Situ, Chenghao ; Li, Yan ; Guo, Yueshuai ; Guo, Xuejiang ; Zhu, Hui</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a332t-cd441e340e67b36cd920aaa1eb4b4886ef7fab85d8e249a8b3152793267b353b3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>automation</topic><topic>bioinformatics</topic><topic>cell adhesion</topic><topic>glycoproteins</topic><topic>glycoproteomics</topic><topic>glycosylation</topic><topic>lectins</topic><topic>magnetism</topic><topic>mass spectrometry</topic><topic>mice</topic><topic>oocytes</topic><topic>peptides</topic><topic>proteome</topic><topic>testes</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Huo, Zian</creatorcontrib><creatorcontrib>Tu, Haixia</creatorcontrib><creatorcontrib>Ren, Jie</creatorcontrib><creatorcontrib>Zhang, Xiangzheng</creatorcontrib><creatorcontrib>Qi, Yaling</creatorcontrib><creatorcontrib>Situ, Chenghao</creatorcontrib><creatorcontrib>Li, Yan</creatorcontrib><creatorcontrib>Guo, Yueshuai</creatorcontrib><creatorcontrib>Guo, Xuejiang</creatorcontrib><creatorcontrib>Zhu, Hui</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>AGRICOLA</collection><collection>AGRICOLA - Academic</collection><jtitle>Journal of proteome research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Huo, Zian</au><au>Tu, Haixia</au><au>Ren, Jie</au><au>Zhang, Xiangzheng</au><au>Qi, Yaling</au><au>Situ, Chenghao</au><au>Li, Yan</au><au>Guo, Yueshuai</au><au>Guo, Xuejiang</au><au>Zhu, Hui</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Lectin-Based SP3 Technology Enables N‑Glycoproteomic Analysis of Mouse Oocytes</atitle><jtitle>Journal of proteome research</jtitle><addtitle>J. Proteome Res</addtitle><date>2024-06-07</date><risdate>2024</risdate><volume>23</volume><issue>6</issue><spage>2137</spage><epage>2147</epage><pages>2137-2147</pages><issn>1535-3893</issn><issn>1535-3907</issn><eissn>1535-3907</eissn><abstract>N-glycosylation is one of the most universal and complex protein post-translational modifications (PTMs), and it is involved in many physiological and pathological activities. Owing to the low abundance of N-glycoproteins, enrichment of N-glycopeptides for mass spectrometry analysis usually requires a large amount of peptides. Additionally, oocyte protein N-glycosylation has not been systemically characterized due to the limited sample amount. Here, we developed a glycosylation enrichment method based on lectin and a single-pot, solid-phase-enhanced sample preparation (SP3) technology, termed lectin-based SP3 technology (LectinSP3). LectinSP3 immobilized lectin on the SP3 beads for N-glycopeptide enrichment. It could identify over 1100 N-glycosylation sites and 600 N-glycoproteins from 10 μg of mouse testis peptides. Furthermore, using the LectinSP3 method, we characterized the N-glycoproteome of 1000 mouse oocytes in three replicates and identified a total of 363 N-glycosylation sites from 215 N-glycoproteins. Bioinformatics analysis revealed that these oocyte N-glycoproteins were mainly enriched in cell adhesion, fertilization, and sperm–egg recognition. Overall, the LectinSP3 method has all procedures performed in one tube, using magnetic beads. It is suitable for analysis of a low amount of samples and is expected to be easily adaptable for automation. In addition, our mouse oocyte protein N-glycosylation profiling could help further characterize the regulation of oocyte functions.</abstract><cop>United States</cop><pub>American Chemical Society</pub><pmid>38787631</pmid><doi>10.1021/acs.jproteome.4c00089</doi><tpages>11</tpages><orcidid>https://orcid.org/0000-0002-0475-5705</orcidid></addata></record> |
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subjects | automation bioinformatics cell adhesion glycoproteins glycoproteomics glycosylation lectins magnetism mass spectrometry mice oocytes peptides proteome testes |
title | Lectin-Based SP3 Technology Enables N‑Glycoproteomic Analysis of Mouse Oocytes |
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