ChIP-seq and RNA-seq Reveal the Involvement of Histone Lactylation Modification in Gestational Diabetes Mellitus
Lactylation is a novel post-translational modification of proteins. Although the histone lactylation modification has been reported to be involved in glucose metabolism, its role and molecular pathways in gestational diabetes mellitus (GDM) are still unclear. This study aims to elucidate the histone...
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Veröffentlicht in: | Journal of proteome research 2024-06, Vol.23 (6), p.1937-1947 |
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creator | Huang, Xiaman Yip, KaCheuk Nie, Hanhui Chen, Ruiping Wang, Xiufang Wang, Yun Lin, Weizhao Li, Ruiman |
description | Lactylation is a novel post-translational modification of proteins. Although the histone lactylation modification has been reported to be involved in glucose metabolism, its role and molecular pathways in gestational diabetes mellitus (GDM) are still unclear. This study aims to elucidate the histone lactylation modification landscapes of GDM patients and explore lactylation-modification-related genes involved in GDM. We employed a combination of RNA-seq analysis and chromatin immunoprecipitation sequencing (ChIP-seq) analysis to identify upregulated differentially expressed genes (DEGs) with hyperhistone lactylation modification in GDM. We demonstrated that the levels of lactate and histone lactylation were significantly elevated in GDM patients. DEGs were involved in diabetes-related pathways, such as the PI3K-Akt signaling pathway, Jak-STAT signaling pathway, and mTOR signaling pathway. ChIP-seq analysis indicated that histone lactylation modification in the promoter regions of the GDM group was significantly changed. By integrating the results of RNA-seq and ChIP-seq analysis, we found that CACNA2D1 is a key gene for histone lactylation modification and is involved in the progression of GDM by promoting cell vitality and proliferation. In conclusion, we identified the key gene CACNA2D1, which upregulated and exhibited hypermodification of histone lactylation in GDM. These findings establish a theoretical groundwork for the targeted therapy of GDM. |
doi_str_mv | 10.1021/acs.jproteome.3c00727 |
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Although the histone lactylation modification has been reported to be involved in glucose metabolism, its role and molecular pathways in gestational diabetes mellitus (GDM) are still unclear. This study aims to elucidate the histone lactylation modification landscapes of GDM patients and explore lactylation-modification-related genes involved in GDM. We employed a combination of RNA-seq analysis and chromatin immunoprecipitation sequencing (ChIP-seq) analysis to identify upregulated differentially expressed genes (DEGs) with hyperhistone lactylation modification in GDM. We demonstrated that the levels of lactate and histone lactylation were significantly elevated in GDM patients. DEGs were involved in diabetes-related pathways, such as the PI3K-Akt signaling pathway, Jak-STAT signaling pathway, and mTOR signaling pathway. ChIP-seq analysis indicated that histone lactylation modification in the promoter regions of the GDM group was significantly changed. By integrating the results of RNA-seq and ChIP-seq analysis, we found that CACNA2D1 is a key gene for histone lactylation modification and is involved in the progression of GDM by promoting cell vitality and proliferation. In conclusion, we identified the key gene CACNA2D1, which upregulated and exhibited hypermodification of histone lactylation in GDM. These findings establish a theoretical groundwork for the targeted therapy of GDM.</description><identifier>ISSN: 1535-3893</identifier><identifier>ISSN: 1535-3907</identifier><identifier>EISSN: 1535-3907</identifier><identifier>DOI: 10.1021/acs.jproteome.3c00727</identifier><identifier>PMID: 38776154</identifier><language>eng</language><publisher>United States: American Chemical Society</publisher><subject>chromatin immunoprecipitation ; gene expression regulation ; genes ; gestational diabetes ; glucose ; histones ; lactic acid ; post-translational modification ; proteome ; sequence analysis ; therapeutics</subject><ispartof>Journal of proteome research, 2024-06, Vol.23 (6), p.1937-1947</ispartof><rights>2024 American Chemical Society</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-a332t-1ceaebd9e96035e79a3765fbfa5f0fb707e5215988f906f883059551e74a90683</cites><orcidid>0000-0003-1239-7968 ; 0009-0009-4518-8370</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://pubs.acs.org/doi/pdf/10.1021/acs.jproteome.3c00727$$EPDF$$P50$$Gacs$$H</linktopdf><linktohtml>$$Uhttps://pubs.acs.org/doi/10.1021/acs.jproteome.3c00727$$EHTML$$P50$$Gacs$$H</linktohtml><link.rule.ids>314,776,780,2752,27053,27901,27902,56713,56763</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38776154$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Huang, Xiaman</creatorcontrib><creatorcontrib>Yip, KaCheuk</creatorcontrib><creatorcontrib>Nie, Hanhui</creatorcontrib><creatorcontrib>Chen, Ruiping</creatorcontrib><creatorcontrib>Wang, Xiufang</creatorcontrib><creatorcontrib>Wang, Yun</creatorcontrib><creatorcontrib>Lin, Weizhao</creatorcontrib><creatorcontrib>Li, Ruiman</creatorcontrib><title>ChIP-seq and RNA-seq Reveal the Involvement of Histone Lactylation Modification in Gestational Diabetes Mellitus</title><title>Journal of proteome research</title><addtitle>J. Proteome Res</addtitle><description>Lactylation is a novel post-translational modification of proteins. Although the histone lactylation modification has been reported to be involved in glucose metabolism, its role and molecular pathways in gestational diabetes mellitus (GDM) are still unclear. This study aims to elucidate the histone lactylation modification landscapes of GDM patients and explore lactylation-modification-related genes involved in GDM. We employed a combination of RNA-seq analysis and chromatin immunoprecipitation sequencing (ChIP-seq) analysis to identify upregulated differentially expressed genes (DEGs) with hyperhistone lactylation modification in GDM. We demonstrated that the levels of lactate and histone lactylation were significantly elevated in GDM patients. DEGs were involved in diabetes-related pathways, such as the PI3K-Akt signaling pathway, Jak-STAT signaling pathway, and mTOR signaling pathway. ChIP-seq analysis indicated that histone lactylation modification in the promoter regions of the GDM group was significantly changed. By integrating the results of RNA-seq and ChIP-seq analysis, we found that CACNA2D1 is a key gene for histone lactylation modification and is involved in the progression of GDM by promoting cell vitality and proliferation. In conclusion, we identified the key gene CACNA2D1, which upregulated and exhibited hypermodification of histone lactylation in GDM. These findings establish a theoretical groundwork for the targeted therapy of GDM.</description><subject>chromatin immunoprecipitation</subject><subject>gene expression regulation</subject><subject>genes</subject><subject>gestational diabetes</subject><subject>glucose</subject><subject>histones</subject><subject>lactic acid</subject><subject>post-translational modification</subject><subject>proteome</subject><subject>sequence analysis</subject><subject>therapeutics</subject><issn>1535-3893</issn><issn>1535-3907</issn><issn>1535-3907</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><recordid>eNqNUV1PwjAUbYxGEP0Jmj76MmxXum6PBBVI8CNEn5duuw0l2wprR8K_tzLgVZ_uR8459-YchO4pGVIS0ieZ2-F60xgHpoIhywkRobhAfcoZD1hCxOWpjxPWQzfWrgmhXBB2jXosFiKifNRHm8lq_hlY2GJZF3j5Pj70S9iBLLFbAZ7XO1PuoILaYaPwTFtnasALmbt9KZ02NX4zhVY67wZd4ylYdxi8xLOWGTiw-A3KUrvW3qIrJUsLd8c6QN-vL1-TWbD4mM4n40UgGQtdQHOQkBUJJBFhHEQimYi4ypTkiqhMEAE8pDyJY5WQSMUxIzzhnIIYSb-I2QA9drreo23rP0orbXP_hKzBtDZl3pyIMhL-A-qlQz6K4tBDeQfNG2NtAyrdNLqSzT6lJP3NJfW5pOdc0mMunvdwPNFmFRRn1ikID6Ad4MA3bePNs3-I_gDCuJ3g</recordid><startdate>20240607</startdate><enddate>20240607</enddate><creator>Huang, Xiaman</creator><creator>Yip, KaCheuk</creator><creator>Nie, Hanhui</creator><creator>Chen, Ruiping</creator><creator>Wang, Xiufang</creator><creator>Wang, Yun</creator><creator>Lin, Weizhao</creator><creator>Li, Ruiman</creator><general>American Chemical Society</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>7S9</scope><scope>L.6</scope><orcidid>https://orcid.org/0000-0003-1239-7968</orcidid><orcidid>https://orcid.org/0009-0009-4518-8370</orcidid></search><sort><creationdate>20240607</creationdate><title>ChIP-seq and RNA-seq Reveal the Involvement of Histone Lactylation Modification in Gestational Diabetes Mellitus</title><author>Huang, Xiaman ; Yip, KaCheuk ; Nie, Hanhui ; Chen, Ruiping ; Wang, Xiufang ; Wang, Yun ; Lin, Weizhao ; Li, Ruiman</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a332t-1ceaebd9e96035e79a3765fbfa5f0fb707e5215988f906f883059551e74a90683</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>chromatin immunoprecipitation</topic><topic>gene expression regulation</topic><topic>genes</topic><topic>gestational diabetes</topic><topic>glucose</topic><topic>histones</topic><topic>lactic acid</topic><topic>post-translational modification</topic><topic>proteome</topic><topic>sequence analysis</topic><topic>therapeutics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Huang, Xiaman</creatorcontrib><creatorcontrib>Yip, KaCheuk</creatorcontrib><creatorcontrib>Nie, Hanhui</creatorcontrib><creatorcontrib>Chen, Ruiping</creatorcontrib><creatorcontrib>Wang, Xiufang</creatorcontrib><creatorcontrib>Wang, Yun</creatorcontrib><creatorcontrib>Lin, Weizhao</creatorcontrib><creatorcontrib>Li, Ruiman</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>AGRICOLA</collection><collection>AGRICOLA - Academic</collection><jtitle>Journal of proteome research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Huang, Xiaman</au><au>Yip, KaCheuk</au><au>Nie, Hanhui</au><au>Chen, Ruiping</au><au>Wang, Xiufang</au><au>Wang, Yun</au><au>Lin, Weizhao</au><au>Li, Ruiman</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>ChIP-seq and RNA-seq Reveal the Involvement of Histone Lactylation Modification in Gestational Diabetes Mellitus</atitle><jtitle>Journal of proteome research</jtitle><addtitle>J. Proteome Res</addtitle><date>2024-06-07</date><risdate>2024</risdate><volume>23</volume><issue>6</issue><spage>1937</spage><epage>1947</epage><pages>1937-1947</pages><issn>1535-3893</issn><issn>1535-3907</issn><eissn>1535-3907</eissn><abstract>Lactylation is a novel post-translational modification of proteins. Although the histone lactylation modification has been reported to be involved in glucose metabolism, its role and molecular pathways in gestational diabetes mellitus (GDM) are still unclear. This study aims to elucidate the histone lactylation modification landscapes of GDM patients and explore lactylation-modification-related genes involved in GDM. We employed a combination of RNA-seq analysis and chromatin immunoprecipitation sequencing (ChIP-seq) analysis to identify upregulated differentially expressed genes (DEGs) with hyperhistone lactylation modification in GDM. We demonstrated that the levels of lactate and histone lactylation were significantly elevated in GDM patients. DEGs were involved in diabetes-related pathways, such as the PI3K-Akt signaling pathway, Jak-STAT signaling pathway, and mTOR signaling pathway. ChIP-seq analysis indicated that histone lactylation modification in the promoter regions of the GDM group was significantly changed. By integrating the results of RNA-seq and ChIP-seq analysis, we found that CACNA2D1 is a key gene for histone lactylation modification and is involved in the progression of GDM by promoting cell vitality and proliferation. In conclusion, we identified the key gene CACNA2D1, which upregulated and exhibited hypermodification of histone lactylation in GDM. These findings establish a theoretical groundwork for the targeted therapy of GDM.</abstract><cop>United States</cop><pub>American Chemical Society</pub><pmid>38776154</pmid><doi>10.1021/acs.jproteome.3c00727</doi><tpages>11</tpages><orcidid>https://orcid.org/0000-0003-1239-7968</orcidid><orcidid>https://orcid.org/0009-0009-4518-8370</orcidid></addata></record> |
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subjects | chromatin immunoprecipitation gene expression regulation genes gestational diabetes glucose histones lactic acid post-translational modification proteome sequence analysis therapeutics |
title | ChIP-seq and RNA-seq Reveal the Involvement of Histone Lactylation Modification in Gestational Diabetes Mellitus |
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