Novel aerobic anoxygenic phototrophic bacterium Jannaschia pagri sp. nov., isolated from seawater around a fish farm
The genus Jannaschia is one of the representatives of aerobic anoxygenic phototrophic (AAP) bacteria, which is a strictly aerobic bacterium, producing a photosynthetic pigment bacteriochlorophyll (BChl) a . However, a part of the genus Jannaschia members have not been confirmed the photosynthetic ab...
Gespeichert in:
| Veröffentlicht in: | Antonie van Leeuwenhoek 2024-12, Vol.117 (1), p.70-70, Article 70 |
|---|---|
| Hauptverfasser: | , , , , , , , , , |
| Format: | Artikel |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | 70 |
|---|---|
| container_issue | 1 |
| container_start_page | 70 |
| container_title | Antonie van Leeuwenhoek |
| container_volume | 117 |
| creator | Kuwata, Koyo Sato-Takabe, Yuki Nakai, Ryosuke Sugimura, Yuya Tazato, Nozomi Kunihiro, Tadao Morohoshi, Sho Iwataki, Mitsunori Hamasaki, Koji Shiozaki, Takuhei |
| description | The genus
Jannaschia
is one of the representatives of aerobic anoxygenic phototrophic (AAP) bacteria, which is a strictly aerobic bacterium, producing a photosynthetic pigment bacteriochlorophyll (BChl)
a
. However, a part of the genus
Jannaschia
members have not been confirmed the photosynthetic ability. The partly presence of the ability in the genus
Jannaschia
could suggest the complexity of evolutionary history for anoxygenic photosynthesis in the genus, which is expected as gene loss and/or horizontal gene transfer. Here a novel AAP bacterium designated as strain AI_62
T
(= DSM 115720
T
= NBRC 115938
T
), was isolated from coastal seawater around a fish farm in the Uwa Sea, Japan. Its closest relatives were identified as
Jannaschia seohaensis
SMK-146
T
(95.6% identity) and
J. formosa
12N15
T
(94.6% identity), which have been reported to produce BChl
a
. The genomic characteristic of strain AI_62
T
clearly showed the possession of the anoxygenic photosynthesis related gene sets. This could be a useful model organism to approach the evolutionary mystery of anoxygenic photosynthesis in the genus
Jannaschia
. Based on a comprehensive consideration of both phylogenetic and phenotypic characteristics, we propose the classification of a novel species within the genus
Jannaschia
, designated as
Jannaschia pagri
sp. nov. The type strain for this newly proposed species is AI_62
T
(= DSM 115720
T
= NBRC 115938
T
). |
| doi_str_mv | 10.1007/s10482-024-01971-z |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_3153598557</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>3045379969</sourcerecordid><originalsourceid>FETCH-LOGICAL-c359t-4555b70e084931ebc66666bbea7c7495c5347faa3eeadffa14089b160d2ed0ef3</originalsourceid><addsrcrecordid>eNqFkUFv1DAQhS0EokvhD3BAlrhwaJZxbMfxEVVQQBVc4BxNnPFuqiQOdtLS_nq8bAGJA8zF8-Rv3sh-jD0XsBUA5nUSoOqygFIVIKwRxd0DthHalIWtrH3INgAgiwpMecKepHSVpa1q85idyLrStQKzYcuncE0DR4qh7R3HKXy_3dGU23kflrDEMO-zaNEtFPt15B9xmjC5fY98xl3seZq3fArX2zPepzDgQh33MYw8Ed5kFTnGsE4dR-77tOce4_iUPfI4JHp2f56yr-_efjl_X1x-vvhw_uaycFLbpVBa69YAQa2sFNS66lBtS2icUVY7LZXxiJIIO-9RKKhtKyroSuqAvDxlr46-cwzfVkpLM_bJ0TDgRGFNjRQ6L6q1Nv9HQVVaSChlRl_-hV6FNU75IQdKS2Pz92eqPFIuhpQi-WaO_YjxthHQHOJrjvE1Ob7mZ3zNXR56cW-9tiN1v0d-5ZUBeQRSvpp2FP_s_oftD_mupsA</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>3045379969</pqid></control><display><type>article</type><title>Novel aerobic anoxygenic phototrophic bacterium Jannaschia pagri sp. nov., isolated from seawater around a fish farm</title><source>MEDLINE</source><source>SpringerLink Journals - AutoHoldings</source><creator>Kuwata, Koyo ; Sato-Takabe, Yuki ; Nakai, Ryosuke ; Sugimura, Yuya ; Tazato, Nozomi ; Kunihiro, Tadao ; Morohoshi, Sho ; Iwataki, Mitsunori ; Hamasaki, Koji ; Shiozaki, Takuhei</creator><creatorcontrib>Kuwata, Koyo ; Sato-Takabe, Yuki ; Nakai, Ryosuke ; Sugimura, Yuya ; Tazato, Nozomi ; Kunihiro, Tadao ; Morohoshi, Sho ; Iwataki, Mitsunori ; Hamasaki, Koji ; Shiozaki, Takuhei</creatorcontrib><description>The genus
Jannaschia
is one of the representatives of aerobic anoxygenic phototrophic (AAP) bacteria, which is a strictly aerobic bacterium, producing a photosynthetic pigment bacteriochlorophyll (BChl)
a
. However, a part of the genus
Jannaschia
members have not been confirmed the photosynthetic ability. The partly presence of the ability in the genus
Jannaschia
could suggest the complexity of evolutionary history for anoxygenic photosynthesis in the genus, which is expected as gene loss and/or horizontal gene transfer. Here a novel AAP bacterium designated as strain AI_62
T
(= DSM 115720
T
= NBRC 115938
T
), was isolated from coastal seawater around a fish farm in the Uwa Sea, Japan. Its closest relatives were identified as
Jannaschia seohaensis
SMK-146
T
(95.6% identity) and
J. formosa
12N15
T
(94.6% identity), which have been reported to produce BChl
a
. The genomic characteristic of strain AI_62
T
clearly showed the possession of the anoxygenic photosynthesis related gene sets. This could be a useful model organism to approach the evolutionary mystery of anoxygenic photosynthesis in the genus
Jannaschia
. Based on a comprehensive consideration of both phylogenetic and phenotypic characteristics, we propose the classification of a novel species within the genus
Jannaschia
, designated as
Jannaschia pagri
sp. nov. The type strain for this newly proposed species is AI_62
T
(= DSM 115720
T
= NBRC 115938
T
).</description><identifier>ISSN: 0003-6072</identifier><identifier>ISSN: 1572-9699</identifier><identifier>EISSN: 1572-9699</identifier><identifier>DOI: 10.1007/s10482-024-01971-z</identifier><identifier>PMID: 38658407</identifier><language>eng</language><publisher>Cham: Springer International Publishing</publisher><subject>Aerobiosis ; Animals ; Aquaculture ; Bacteria ; Bacterial Typing Techniques ; Bacteriochlorophyll ; Bacteriochlorophyll A - analysis ; Biomedical and Life Sciences ; coastal water ; DNA, Bacterial - genetics ; Fish ; Fish farms ; gene deletion ; Gene transfer ; genes ; genomics ; genus ; horizontal gene transfer ; Horizontal transfer ; Japan ; Life Sciences ; Medical Microbiology ; Microbiology ; New species ; Original Paper ; phenotype ; Photosynthesis ; photosynthetic bacteria ; Photosynthetic pigments ; Phylogeny ; Plant Sciences ; RNA, Ribosomal, 16S - genetics ; Seawater ; Seawater - microbiology ; Soil Science & Conservation ; species</subject><ispartof>Antonie van Leeuwenhoek, 2024-12, Vol.117 (1), p.70-70, Article 70</ispartof><rights>The Author(s), under exclusive licence to Springer Nature Switzerland AG 2024. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.</rights><rights>2024. The Author(s), under exclusive licence to Springer Nature Switzerland AG.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c359t-4555b70e084931ebc66666bbea7c7495c5347faa3eeadffa14089b160d2ed0ef3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s10482-024-01971-z$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s10482-024-01971-z$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27903,27904,41467,42536,51297</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38658407$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Kuwata, Koyo</creatorcontrib><creatorcontrib>Sato-Takabe, Yuki</creatorcontrib><creatorcontrib>Nakai, Ryosuke</creatorcontrib><creatorcontrib>Sugimura, Yuya</creatorcontrib><creatorcontrib>Tazato, Nozomi</creatorcontrib><creatorcontrib>Kunihiro, Tadao</creatorcontrib><creatorcontrib>Morohoshi, Sho</creatorcontrib><creatorcontrib>Iwataki, Mitsunori</creatorcontrib><creatorcontrib>Hamasaki, Koji</creatorcontrib><creatorcontrib>Shiozaki, Takuhei</creatorcontrib><title>Novel aerobic anoxygenic phototrophic bacterium Jannaschia pagri sp. nov., isolated from seawater around a fish farm</title><title>Antonie van Leeuwenhoek</title><addtitle>Antonie van Leeuwenhoek</addtitle><addtitle>Antonie Van Leeuwenhoek</addtitle><description>The genus
Jannaschia
is one of the representatives of aerobic anoxygenic phototrophic (AAP) bacteria, which is a strictly aerobic bacterium, producing a photosynthetic pigment bacteriochlorophyll (BChl)
a
. However, a part of the genus
Jannaschia
members have not been confirmed the photosynthetic ability. The partly presence of the ability in the genus
Jannaschia
could suggest the complexity of evolutionary history for anoxygenic photosynthesis in the genus, which is expected as gene loss and/or horizontal gene transfer. Here a novel AAP bacterium designated as strain AI_62
T
(= DSM 115720
T
= NBRC 115938
T
), was isolated from coastal seawater around a fish farm in the Uwa Sea, Japan. Its closest relatives were identified as
Jannaschia seohaensis
SMK-146
T
(95.6% identity) and
J. formosa
12N15
T
(94.6% identity), which have been reported to produce BChl
a
. The genomic characteristic of strain AI_62
T
clearly showed the possession of the anoxygenic photosynthesis related gene sets. This could be a useful model organism to approach the evolutionary mystery of anoxygenic photosynthesis in the genus
Jannaschia
. Based on a comprehensive consideration of both phylogenetic and phenotypic characteristics, we propose the classification of a novel species within the genus
Jannaschia
, designated as
Jannaschia pagri
sp. nov. The type strain for this newly proposed species is AI_62
T
(= DSM 115720
T
= NBRC 115938
T
).</description><subject>Aerobiosis</subject><subject>Animals</subject><subject>Aquaculture</subject><subject>Bacteria</subject><subject>Bacterial Typing Techniques</subject><subject>Bacteriochlorophyll</subject><subject>Bacteriochlorophyll A - analysis</subject><subject>Biomedical and Life Sciences</subject><subject>coastal water</subject><subject>DNA, Bacterial - genetics</subject><subject>Fish</subject><subject>Fish farms</subject><subject>gene deletion</subject><subject>Gene transfer</subject><subject>genes</subject><subject>genomics</subject><subject>genus</subject><subject>horizontal gene transfer</subject><subject>Horizontal transfer</subject><subject>Japan</subject><subject>Life Sciences</subject><subject>Medical Microbiology</subject><subject>Microbiology</subject><subject>New species</subject><subject>Original Paper</subject><subject>phenotype</subject><subject>Photosynthesis</subject><subject>photosynthetic bacteria</subject><subject>Photosynthetic pigments</subject><subject>Phylogeny</subject><subject>Plant Sciences</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Seawater</subject><subject>Seawater - microbiology</subject><subject>Soil Science & Conservation</subject><subject>species</subject><issn>0003-6072</issn><issn>1572-9699</issn><issn>1572-9699</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkUFv1DAQhS0EokvhD3BAlrhwaJZxbMfxEVVQQBVc4BxNnPFuqiQOdtLS_nq8bAGJA8zF8-Rv3sh-jD0XsBUA5nUSoOqygFIVIKwRxd0DthHalIWtrH3INgAgiwpMecKepHSVpa1q85idyLrStQKzYcuncE0DR4qh7R3HKXy_3dGU23kflrDEMO-zaNEtFPt15B9xmjC5fY98xl3seZq3fArX2zPepzDgQh33MYw8Ed5kFTnGsE4dR-77tOce4_iUPfI4JHp2f56yr-_efjl_X1x-vvhw_uaycFLbpVBa69YAQa2sFNS66lBtS2icUVY7LZXxiJIIO-9RKKhtKyroSuqAvDxlr46-cwzfVkpLM_bJ0TDgRGFNjRQ6L6q1Nv9HQVVaSChlRl_-hV6FNU75IQdKS2Pz92eqPFIuhpQi-WaO_YjxthHQHOJrjvE1Ob7mZ3zNXR56cW-9tiN1v0d-5ZUBeQRSvpp2FP_s_oftD_mupsA</recordid><startdate>20241201</startdate><enddate>20241201</enddate><creator>Kuwata, Koyo</creator><creator>Sato-Takabe, Yuki</creator><creator>Nakai, Ryosuke</creator><creator>Sugimura, Yuya</creator><creator>Tazato, Nozomi</creator><creator>Kunihiro, Tadao</creator><creator>Morohoshi, Sho</creator><creator>Iwataki, Mitsunori</creator><creator>Hamasaki, Koji</creator><creator>Shiozaki, Takuhei</creator><general>Springer International Publishing</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7T7</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>K9.</scope><scope>M7N</scope><scope>P64</scope><scope>7X8</scope><scope>7S9</scope><scope>L.6</scope></search><sort><creationdate>20241201</creationdate><title>Novel aerobic anoxygenic phototrophic bacterium Jannaschia pagri sp. nov., isolated from seawater around a fish farm</title><author>Kuwata, Koyo ; Sato-Takabe, Yuki ; Nakai, Ryosuke ; Sugimura, Yuya ; Tazato, Nozomi ; Kunihiro, Tadao ; Morohoshi, Sho ; Iwataki, Mitsunori ; Hamasaki, Koji ; Shiozaki, Takuhei</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c359t-4555b70e084931ebc66666bbea7c7495c5347faa3eeadffa14089b160d2ed0ef3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Aerobiosis</topic><topic>Animals</topic><topic>Aquaculture</topic><topic>Bacteria</topic><topic>Bacterial Typing Techniques</topic><topic>Bacteriochlorophyll</topic><topic>Bacteriochlorophyll A - analysis</topic><topic>Biomedical and Life Sciences</topic><topic>coastal water</topic><topic>DNA, Bacterial - genetics</topic><topic>Fish</topic><topic>Fish farms</topic><topic>gene deletion</topic><topic>Gene transfer</topic><topic>genes</topic><topic>genomics</topic><topic>genus</topic><topic>horizontal gene transfer</topic><topic>Horizontal transfer</topic><topic>Japan</topic><topic>Life Sciences</topic><topic>Medical Microbiology</topic><topic>Microbiology</topic><topic>New species</topic><topic>Original Paper</topic><topic>phenotype</topic><topic>Photosynthesis</topic><topic>photosynthetic bacteria</topic><topic>Photosynthetic pigments</topic><topic>Phylogeny</topic><topic>Plant Sciences</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Seawater</topic><topic>Seawater - microbiology</topic><topic>Soil Science & Conservation</topic><topic>species</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Kuwata, Koyo</creatorcontrib><creatorcontrib>Sato-Takabe, Yuki</creatorcontrib><creatorcontrib>Nakai, Ryosuke</creatorcontrib><creatorcontrib>Sugimura, Yuya</creatorcontrib><creatorcontrib>Tazato, Nozomi</creatorcontrib><creatorcontrib>Kunihiro, Tadao</creatorcontrib><creatorcontrib>Morohoshi, Sho</creatorcontrib><creatorcontrib>Iwataki, Mitsunori</creatorcontrib><creatorcontrib>Hamasaki, Koji</creatorcontrib><creatorcontrib>Shiozaki, Takuhei</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>MEDLINE - Academic</collection><collection>AGRICOLA</collection><collection>AGRICOLA - Academic</collection><jtitle>Antonie van Leeuwenhoek</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Kuwata, Koyo</au><au>Sato-Takabe, Yuki</au><au>Nakai, Ryosuke</au><au>Sugimura, Yuya</au><au>Tazato, Nozomi</au><au>Kunihiro, Tadao</au><au>Morohoshi, Sho</au><au>Iwataki, Mitsunori</au><au>Hamasaki, Koji</au><au>Shiozaki, Takuhei</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Novel aerobic anoxygenic phototrophic bacterium Jannaschia pagri sp. nov., isolated from seawater around a fish farm</atitle><jtitle>Antonie van Leeuwenhoek</jtitle><stitle>Antonie van Leeuwenhoek</stitle><addtitle>Antonie Van Leeuwenhoek</addtitle><date>2024-12-01</date><risdate>2024</risdate><volume>117</volume><issue>1</issue><spage>70</spage><epage>70</epage><pages>70-70</pages><artnum>70</artnum><issn>0003-6072</issn><issn>1572-9699</issn><eissn>1572-9699</eissn><abstract>The genus
Jannaschia
is one of the representatives of aerobic anoxygenic phototrophic (AAP) bacteria, which is a strictly aerobic bacterium, producing a photosynthetic pigment bacteriochlorophyll (BChl)
a
. However, a part of the genus
Jannaschia
members have not been confirmed the photosynthetic ability. The partly presence of the ability in the genus
Jannaschia
could suggest the complexity of evolutionary history for anoxygenic photosynthesis in the genus, which is expected as gene loss and/or horizontal gene transfer. Here a novel AAP bacterium designated as strain AI_62
T
(= DSM 115720
T
= NBRC 115938
T
), was isolated from coastal seawater around a fish farm in the Uwa Sea, Japan. Its closest relatives were identified as
Jannaschia seohaensis
SMK-146
T
(95.6% identity) and
J. formosa
12N15
T
(94.6% identity), which have been reported to produce BChl
a
. The genomic characteristic of strain AI_62
T
clearly showed the possession of the anoxygenic photosynthesis related gene sets. This could be a useful model organism to approach the evolutionary mystery of anoxygenic photosynthesis in the genus
Jannaschia
. Based on a comprehensive consideration of both phylogenetic and phenotypic characteristics, we propose the classification of a novel species within the genus
Jannaschia
, designated as
Jannaschia pagri
sp. nov. The type strain for this newly proposed species is AI_62
T
(= DSM 115720
T
= NBRC 115938
T
).</abstract><cop>Cham</cop><pub>Springer International Publishing</pub><pmid>38658407</pmid><doi>10.1007/s10482-024-01971-z</doi><tpages>1</tpages></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 0003-6072 |
| ispartof | Antonie van Leeuwenhoek, 2024-12, Vol.117 (1), p.70-70, Article 70 |
| issn | 0003-6072 1572-9699 1572-9699 |
| language | eng |
| recordid | cdi_proquest_miscellaneous_3153598557 |
| source | MEDLINE; SpringerLink Journals - AutoHoldings |
| subjects | Aerobiosis Animals Aquaculture Bacteria Bacterial Typing Techniques Bacteriochlorophyll Bacteriochlorophyll A - analysis Biomedical and Life Sciences coastal water DNA, Bacterial - genetics Fish Fish farms gene deletion Gene transfer genes genomics genus horizontal gene transfer Horizontal transfer Japan Life Sciences Medical Microbiology Microbiology New species Original Paper phenotype Photosynthesis photosynthetic bacteria Photosynthetic pigments Phylogeny Plant Sciences RNA, Ribosomal, 16S - genetics Seawater Seawater - microbiology Soil Science & Conservation species |
| title | Novel aerobic anoxygenic phototrophic bacterium Jannaschia pagri sp. nov., isolated from seawater around a fish farm |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-27T20%3A28%3A54IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Novel%20aerobic%20anoxygenic%20phototrophic%20bacterium%20Jannaschia%20pagri%20sp.%20nov.,%20isolated%20from%20seawater%20around%20a%20fish%20farm&rft.jtitle=Antonie%20van%20Leeuwenhoek&rft.au=Kuwata,%20Koyo&rft.date=2024-12-01&rft.volume=117&rft.issue=1&rft.spage=70&rft.epage=70&rft.pages=70-70&rft.artnum=70&rft.issn=0003-6072&rft.eissn=1572-9699&rft_id=info:doi/10.1007/s10482-024-01971-z&rft_dat=%3Cproquest_cross%3E3045379969%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=3045379969&rft_id=info:pmid/38658407&rfr_iscdi=true |