Roseomonas populi sp. nov., an acetate-degrading bacteria isolated from the stem of Populus tomentosa

Strain CN29 T , isolated from the stem of 5- to 6-year-old Populus tomentosa in Shandong, China, was characterized using a polyphasic taxonomic approach. Cells of CN29 T were Gram-stain negative, aerobic, nonspore-forming, and nonmotile coccoid. Growth occurred at 20–37 °C, pH 4.0–9.0 (optimum, pH 6...

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Veröffentlicht in:Antonie van Leeuwenhoek 2024-12, Vol.117 (1), p.2-2, Article 2
Hauptverfasser: Cheng, Yao, Zhu, Wen, Han, Shuo, Yang, Jingjing, Wu, Guanqi, Zhao, Guozhu, He, Xiangwei
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container_title Antonie van Leeuwenhoek
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Zhu, Wen
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Wu, Guanqi
Zhao, Guozhu
He, Xiangwei
description Strain CN29 T , isolated from the stem of 5- to 6-year-old Populus tomentosa in Shandong, China, was characterized using a polyphasic taxonomic approach. Cells of CN29 T were Gram-stain negative, aerobic, nonspore-forming, and nonmotile coccoid. Growth occurred at 20–37 °C, pH 4.0–9.0 (optimum, pH 6.0), and with 0–1% NaCl (optimum, 1%). Phylogenetic analysis based on the 16S rRNA gene sequence indicated that strain CN29 T was closely related to members of the genus Roseomonas and closest to Roseomonas pecuniae N75 T (96.6%). This classification was further supported by phylogenetic analysis using additional core genes. The average nucleotide identity and digital DNA‒DNA hybridization values between strain CN29 T and Roseomonas populi CN29 T were 82.7% and 27.8%, respectively. The genome size of strain CN29 T was 5.87 Mb, with a G + C content of 70.9%. The major cellular fatty acids included summed feature 8 (C 18:1 ω7c/C 18:1 ω6c), C 19:0 cyclo ω8c and C 16:0 . The major respiratory quinone was Q-10. The polar lipids were phosphatidylcholine, aminolipid, phosphatidylglycerol, and diphosphatidylglycerol. Strain CN29 T can utilize acetate as a carbon source for growth and metabolism. Additionally, it contains acid phosphatase (2-naphthyl phosphate), which catalyzes the hydrolysis of phosphoric monoesters. The CN29 T strain contains several genes, including maeB , gdhB , and cysJ , involved in carbon, nitrogen, and sulfur cycling. These findings suggest that the strain may actively participate in ecosystem cycling, leading to soil improvement and promoting the growth of poplar trees. Based on the phylogenetic, phenotypic, and genotypic characteristics, strain CN29 T is concluded to represent a novel species of the genus Roseomonas , for which the name Roseomonas populi sp. nov. is proposed. The type strain is CN29 T (= JCM 35579 T  = GDMCC 1.3267 T ).
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Cells of CN29 T were Gram-stain negative, aerobic, nonspore-forming, and nonmotile coccoid. Growth occurred at 20–37 °C, pH 4.0–9.0 (optimum, pH 6.0), and with 0–1% NaCl (optimum, 1%). Phylogenetic analysis based on the 16S rRNA gene sequence indicated that strain CN29 T was closely related to members of the genus Roseomonas and closest to Roseomonas pecuniae N75 T (96.6%). This classification was further supported by phylogenetic analysis using additional core genes. The average nucleotide identity and digital DNA‒DNA hybridization values between strain CN29 T and Roseomonas populi CN29 T were 82.7% and 27.8%, respectively. The genome size of strain CN29 T was 5.87 Mb, with a G + C content of 70.9%. The major cellular fatty acids included summed feature 8 (C 18:1 ω7c/C 18:1 ω6c), C 19:0 cyclo ω8c and C 16:0 . The major respiratory quinone was Q-10. The polar lipids were phosphatidylcholine, aminolipid, phosphatidylglycerol, and diphosphatidylglycerol. Strain CN29 T can utilize acetate as a carbon source for growth and metabolism. Additionally, it contains acid phosphatase (2-naphthyl phosphate), which catalyzes the hydrolysis of phosphoric monoesters. The CN29 T strain contains several genes, including maeB , gdhB , and cysJ , involved in carbon, nitrogen, and sulfur cycling. These findings suggest that the strain may actively participate in ecosystem cycling, leading to soil improvement and promoting the growth of poplar trees. Based on the phylogenetic, phenotypic, and genotypic characteristics, strain CN29 T is concluded to represent a novel species of the genus Roseomonas , for which the name Roseomonas populi sp. nov. is proposed. 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Cells of CN29 T were Gram-stain negative, aerobic, nonspore-forming, and nonmotile coccoid. Growth occurred at 20–37 °C, pH 4.0–9.0 (optimum, pH 6.0), and with 0–1% NaCl (optimum, 1%). Phylogenetic analysis based on the 16S rRNA gene sequence indicated that strain CN29 T was closely related to members of the genus Roseomonas and closest to Roseomonas pecuniae N75 T (96.6%). This classification was further supported by phylogenetic analysis using additional core genes. The average nucleotide identity and digital DNA‒DNA hybridization values between strain CN29 T and Roseomonas populi CN29 T were 82.7% and 27.8%, respectively. The genome size of strain CN29 T was 5.87 Mb, with a G + C content of 70.9%. The major cellular fatty acids included summed feature 8 (C 18:1 ω7c/C 18:1 ω6c), C 19:0 cyclo ω8c and C 16:0 . The major respiratory quinone was Q-10. The polar lipids were phosphatidylcholine, aminolipid, phosphatidylglycerol, and diphosphatidylglycerol. Strain CN29 T can utilize acetate as a carbon source for growth and metabolism. Additionally, it contains acid phosphatase (2-naphthyl phosphate), which catalyzes the hydrolysis of phosphoric monoesters. The CN29 T strain contains several genes, including maeB , gdhB , and cysJ , involved in carbon, nitrogen, and sulfur cycling. These findings suggest that the strain may actively participate in ecosystem cycling, leading to soil improvement and promoting the growth of poplar trees. Based on the phylogenetic, phenotypic, and genotypic characteristics, strain CN29 T is concluded to represent a novel species of the genus Roseomonas , for which the name Roseomonas populi sp. nov. is proposed. 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Zhu, Wen ; Han, Shuo ; Yang, Jingjing ; Wu, Guanqi ; Zhao, Guozhu ; He, Xiangwei</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c359t-cf75d178b23b77a0e1d5ba265a362bdda81d6cbe6b5a112bfbd0918014c741333</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>acetates</topic><topic>Acetates - metabolism</topic><topic>Acetic acid</topic><topic>Acid phosphatase</topic><topic>Bacterial Typing Techniques</topic><topic>Biodegradation</topic><topic>Biomedical and Life Sciences</topic><topic>Carbon</topic><topic>Carbon cycle</topic><topic>Carbon sources</topic><topic>Cardiolipin</topic><topic>China</topic><topic>Cycles</topic><topic>Deoxyribonucleic acid</topic><topic>DNA</topic><topic>DNA, Bacterial - genetics</topic><topic>ecosystems</topic><topic>Genes</topic><topic>genome</topic><topic>Genomes</topic><topic>genus</topic><topic>Hybridization</topic><topic>hydrolysis</topic><topic>Lecithin</topic><topic>Life Sciences</topic><topic>Lipids</topic><topic>Medical Microbiology</topic><topic>metabolism</topic><topic>Methylobacteriaceae - classification</topic><topic>Methylobacteriaceae - isolation &amp; purification</topic><topic>Microbiology</topic><topic>New species</topic><topic>nitrogen</topic><topic>Nucleic Acid Hybridization</topic><topic>nucleotide sequences</topic><topic>Nucleotides</topic><topic>Original Paper</topic><topic>phenotype</topic><topic>phosphates</topic><topic>Phosphatidylcholine</topic><topic>phosphatidylcholines</topic><topic>Phosphatidylglycerol</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Plant Sciences</topic><topic>Plant Stems - microbiology</topic><topic>Populus - microbiology</topic><topic>Populus tomentosa</topic><topic>Quinones</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Roseomonas</topic><topic>rRNA 16S</topic><topic>Sodium chloride</topic><topic>Soil improvement</topic><topic>Soil Science &amp; Conservation</topic><topic>species</topic><topic>Stems</topic><topic>Sulfur</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Cheng, Yao</creatorcontrib><creatorcontrib>Zhu, Wen</creatorcontrib><creatorcontrib>Han, Shuo</creatorcontrib><creatorcontrib>Yang, Jingjing</creatorcontrib><creatorcontrib>Wu, Guanqi</creatorcontrib><creatorcontrib>Zhao, Guozhu</creatorcontrib><creatorcontrib>He, Xiangwei</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>ProQuest Health &amp; 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Cells of CN29 T were Gram-stain negative, aerobic, nonspore-forming, and nonmotile coccoid. Growth occurred at 20–37 °C, pH 4.0–9.0 (optimum, pH 6.0), and with 0–1% NaCl (optimum, 1%). Phylogenetic analysis based on the 16S rRNA gene sequence indicated that strain CN29 T was closely related to members of the genus Roseomonas and closest to Roseomonas pecuniae N75 T (96.6%). This classification was further supported by phylogenetic analysis using additional core genes. The average nucleotide identity and digital DNA‒DNA hybridization values between strain CN29 T and Roseomonas populi CN29 T were 82.7% and 27.8%, respectively. The genome size of strain CN29 T was 5.87 Mb, with a G + C content of 70.9%. The major cellular fatty acids included summed feature 8 (C 18:1 ω7c/C 18:1 ω6c), C 19:0 cyclo ω8c and C 16:0 . The major respiratory quinone was Q-10. The polar lipids were phosphatidylcholine, aminolipid, phosphatidylglycerol, and diphosphatidylglycerol. Strain CN29 T can utilize acetate as a carbon source for growth and metabolism. Additionally, it contains acid phosphatase (2-naphthyl phosphate), which catalyzes the hydrolysis of phosphoric monoesters. The CN29 T strain contains several genes, including maeB , gdhB , and cysJ , involved in carbon, nitrogen, and sulfur cycling. These findings suggest that the strain may actively participate in ecosystem cycling, leading to soil improvement and promoting the growth of poplar trees. Based on the phylogenetic, phenotypic, and genotypic characteristics, strain CN29 T is concluded to represent a novel species of the genus Roseomonas , for which the name Roseomonas populi sp. nov. is proposed. The type strain is CN29 T (= JCM 35579 T  = GDMCC 1.3267 T ).</abstract><cop>Cham</cop><pub>Springer International Publishing</pub><pmid>38147266</pmid><doi>10.1007/s10482-023-01911-3</doi><tpages>1</tpages></addata></record>
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subjects acetates
Acetates - metabolism
Acetic acid
Acid phosphatase
Bacterial Typing Techniques
Biodegradation
Biomedical and Life Sciences
Carbon
Carbon cycle
Carbon sources
Cardiolipin
China
Cycles
Deoxyribonucleic acid
DNA
DNA, Bacterial - genetics
ecosystems
Genes
genome
Genomes
genus
Hybridization
hydrolysis
Lecithin
Life Sciences
Lipids
Medical Microbiology
metabolism
Methylobacteriaceae - classification
Methylobacteriaceae - isolation & purification
Microbiology
New species
nitrogen
Nucleic Acid Hybridization
nucleotide sequences
Nucleotides
Original Paper
phenotype
phosphates
Phosphatidylcholine
phosphatidylcholines
Phosphatidylglycerol
Phylogenetics
Phylogeny
Plant Sciences
Plant Stems - microbiology
Populus - microbiology
Populus tomentosa
Quinones
RNA, Ribosomal, 16S - genetics
Roseomonas
rRNA 16S
Sodium chloride
Soil improvement
Soil Science & Conservation
species
Stems
Sulfur
title Roseomonas populi sp. nov., an acetate-degrading bacteria isolated from the stem of Populus tomentosa
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