Field measures of strengthen plant-microbial remediation of PAHs-FQs compound pollution
In this study, five PAHs (benzo [b] fluoranthene (BbF), phenanthrene (Phe), fluoranthene (Flu), fluorene (Fl), benzo [A] pyrene (Bap)), and five FQs (ofloxacin (OFL), enrofloxacin (ENR), ciprofloxacin (CIP), norfloxacin (NOR), lomefloxacin (LOM)) were selected as ligands; peroxidase (1NML) was selec...
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| creator | Zhao, Lei Han, Zhenzhen Zhou, Mengying Lyu, Cong Li, Yu |
| description | In this study, five PAHs (benzo [b] fluoranthene (BbF), phenanthrene (Phe), fluoranthene (Flu), fluorene (Fl), benzo [A] pyrene (Bap)), and five FQs (ofloxacin (OFL), enrofloxacin (ENR), ciprofloxacin (CIP), norfloxacin (NOR), lomefloxacin (LOM)) were selected as ligands; peroxidase (1NML) was selected as receptor degrading protein. In the plant-microbial degradation, the factors with significant inhibitory effects are NOR, Bap, CIP, ENR, OFL, Flu, LOM, Phe, Fl, and BbF by the fractional factorial design experiment and molecular docking-assisted molecular dynamics methods. Using Taguchi experiment and molecular dynamics simulation methods, the main external field measures were designed and screened to effectively promote the degradation of PAHs-FQs under the combined pollution scenarios of Bap-CIP and BbF-NOR, respectively. The peroxidase mutation design plans with enhanced substrate affinity were then designed and screened using the DS software by predicting the virtual key amino acid of peroxidase. The novel biodegradable enzymes 2YCD-1, 2YCD-4, 2YCD-5, 2YCD-7, and 2YCD-9 had better structures and showed excellent degradability for PAHs and FQs. This study explored the degradation rules of the composite pollutants in the coexistence systems of multiple PAHs and FQs, providing the best external field measures for the control and treatment of the combined pollution effects of different PAHs and FQs. Overall, the current study has important practical significance for promoting the plant-microbial joint remediation of PAHs-FQs pollution and for reducing the combined pollution of PAHs and FQs in farmland systems. |
| doi_str_mv | 10.1007/s11356-023-27618-6 |
| format | Article |
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In the plant-microbial degradation, the factors with significant inhibitory effects are NOR, Bap, CIP, ENR, OFL, Flu, LOM, Phe, Fl, and BbF by the fractional factorial design experiment and molecular docking-assisted molecular dynamics methods. Using Taguchi experiment and molecular dynamics simulation methods, the main external field measures were designed and screened to effectively promote the degradation of PAHs-FQs under the combined pollution scenarios of Bap-CIP and BbF-NOR, respectively. The peroxidase mutation design plans with enhanced substrate affinity were then designed and screened using the DS software by predicting the virtual key amino acid of peroxidase. The novel biodegradable enzymes 2YCD-1, 2YCD-4, 2YCD-5, 2YCD-7, and 2YCD-9 had better structures and showed excellent degradability for PAHs and FQs. This study explored the degradation rules of the composite pollutants in the coexistence systems of multiple PAHs and FQs, providing the best external field measures for the control and treatment of the combined pollution effects of different PAHs and FQs. Overall, the current study has important practical significance for promoting the plant-microbial joint remediation of PAHs-FQs pollution and for reducing the combined pollution of PAHs and FQs in farmland systems.</description><identifier>ISSN: 1614-7499</identifier><identifier>ISSN: 0944-1344</identifier><identifier>EISSN: 1614-7499</identifier><identifier>DOI: 10.1007/s11356-023-27618-6</identifier><identifier>PMID: 37202637</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Agricultural land ; Amino acids ; Aquatic Pollution ; Atmospheric Protection/Air Quality Control/Air Pollution ; biodegradability ; Biodegradation ; Ciprofloxacin ; Coexistence ; computer software ; Degradability ; Degradation ; Design ; Earth and Environmental Science ; Ecotoxicology ; Enrofloxacin ; Environment ; Environmental Chemistry ; Environmental Health ; Environmental science ; experimental design ; Fluoranthene ; Fluorene ; fluorenes ; Fractional factorial design ; Influenza ; ligands ; Lomefloxacin ; Microbial degradation ; Microorganisms ; Molecular docking ; Molecular dynamics ; mutation ; Norfloxacin ; Ofloxacin ; Peroxidase ; Phenanthrene ; phenanthrenes ; Pollution ; Pollution effects ; Polycyclic aromatic hydrocarbons ; Remediation ; Research Article ; Substrate preferences ; Substrates ; Waste Water Technology ; Water Management ; Water Pollution Control</subject><ispartof>Environmental science and pollution research international, 2023-06, Vol.30 (29), p.74093-74110</ispartof><rights>The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature 2023. 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The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c408t-a6fb3f1829cd504b6d6667951a15f9cad0dc7f5965d9ced090a9ccd683b505063</citedby><cites>FETCH-LOGICAL-c408t-a6fb3f1829cd504b6d6667951a15f9cad0dc7f5965d9ced090a9ccd683b505063</cites><orcidid>0000-0003-1430-7989</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s11356-023-27618-6$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s11356-023-27618-6$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/37202637$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zhao, Lei</creatorcontrib><creatorcontrib>Han, Zhenzhen</creatorcontrib><creatorcontrib>Zhou, Mengying</creatorcontrib><creatorcontrib>Lyu, Cong</creatorcontrib><creatorcontrib>Li, Yu</creatorcontrib><title>Field measures of strengthen plant-microbial remediation of PAHs-FQs compound pollution</title><title>Environmental science and pollution research international</title><addtitle>Environ Sci Pollut Res</addtitle><addtitle>Environ Sci Pollut Res Int</addtitle><description>In this study, five PAHs (benzo [b] fluoranthene (BbF), phenanthrene (Phe), fluoranthene (Flu), fluorene (Fl), benzo [A] pyrene (Bap)), and five FQs (ofloxacin (OFL), enrofloxacin (ENR), ciprofloxacin (CIP), norfloxacin (NOR), lomefloxacin (LOM)) were selected as ligands; peroxidase (1NML) was selected as receptor degrading protein. In the plant-microbial degradation, the factors with significant inhibitory effects are NOR, Bap, CIP, ENR, OFL, Flu, LOM, Phe, Fl, and BbF by the fractional factorial design experiment and molecular docking-assisted molecular dynamics methods. Using Taguchi experiment and molecular dynamics simulation methods, the main external field measures were designed and screened to effectively promote the degradation of PAHs-FQs under the combined pollution scenarios of Bap-CIP and BbF-NOR, respectively. The peroxidase mutation design plans with enhanced substrate affinity were then designed and screened using the DS software by predicting the virtual key amino acid of peroxidase. The novel biodegradable enzymes 2YCD-1, 2YCD-4, 2YCD-5, 2YCD-7, and 2YCD-9 had better structures and showed excellent degradability for PAHs and FQs. This study explored the degradation rules of the composite pollutants in the coexistence systems of multiple PAHs and FQs, providing the best external field measures for the control and treatment of the combined pollution effects of different PAHs and FQs. Overall, the current study has important practical significance for promoting the plant-microbial joint remediation of PAHs-FQs pollution and for reducing the combined pollution of PAHs and FQs in farmland systems.</description><subject>Agricultural land</subject><subject>Amino acids</subject><subject>Aquatic Pollution</subject><subject>Atmospheric Protection/Air Quality Control/Air Pollution</subject><subject>biodegradability</subject><subject>Biodegradation</subject><subject>Ciprofloxacin</subject><subject>Coexistence</subject><subject>computer software</subject><subject>Degradability</subject><subject>Degradation</subject><subject>Design</subject><subject>Earth and Environmental Science</subject><subject>Ecotoxicology</subject><subject>Enrofloxacin</subject><subject>Environment</subject><subject>Environmental Chemistry</subject><subject>Environmental Health</subject><subject>Environmental science</subject><subject>experimental 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Cong</au><au>Li, Yu</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Field measures of strengthen plant-microbial remediation of PAHs-FQs compound pollution</atitle><jtitle>Environmental science and pollution research international</jtitle><stitle>Environ Sci Pollut Res</stitle><addtitle>Environ Sci Pollut Res Int</addtitle><date>2023-06-01</date><risdate>2023</risdate><volume>30</volume><issue>29</issue><spage>74093</spage><epage>74110</epage><pages>74093-74110</pages><issn>1614-7499</issn><issn>0944-1344</issn><eissn>1614-7499</eissn><abstract>In this study, five PAHs (benzo [b] fluoranthene (BbF), phenanthrene (Phe), fluoranthene (Flu), fluorene (Fl), benzo [A] pyrene (Bap)), and five FQs (ofloxacin (OFL), enrofloxacin (ENR), ciprofloxacin (CIP), norfloxacin (NOR), lomefloxacin (LOM)) were selected as ligands; peroxidase (1NML) was selected as receptor degrading protein. In the plant-microbial degradation, the factors with significant inhibitory effects are NOR, Bap, CIP, ENR, OFL, Flu, LOM, Phe, Fl, and BbF by the fractional factorial design experiment and molecular docking-assisted molecular dynamics methods. Using Taguchi experiment and molecular dynamics simulation methods, the main external field measures were designed and screened to effectively promote the degradation of PAHs-FQs under the combined pollution scenarios of Bap-CIP and BbF-NOR, respectively. The peroxidase mutation design plans with enhanced substrate affinity were then designed and screened using the DS software by predicting the virtual key amino acid of peroxidase. The novel biodegradable enzymes 2YCD-1, 2YCD-4, 2YCD-5, 2YCD-7, and 2YCD-9 had better structures and showed excellent degradability for PAHs and FQs. This study explored the degradation rules of the composite pollutants in the coexistence systems of multiple PAHs and FQs, providing the best external field measures for the control and treatment of the combined pollution effects of different PAHs and FQs. Overall, the current study has important practical significance for promoting the plant-microbial joint remediation of PAHs-FQs pollution and for reducing the combined pollution of PAHs and FQs in farmland systems.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><pmid>37202637</pmid><doi>10.1007/s11356-023-27618-6</doi><tpages>18</tpages><orcidid>https://orcid.org/0000-0003-1430-7989</orcidid></addata></record> |
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| subjects | Agricultural land Amino acids Aquatic Pollution Atmospheric Protection/Air Quality Control/Air Pollution biodegradability Biodegradation Ciprofloxacin Coexistence computer software Degradability Degradation Design Earth and Environmental Science Ecotoxicology Enrofloxacin Environment Environmental Chemistry Environmental Health Environmental science experimental design Fluoranthene Fluorene fluorenes Fractional factorial design Influenza ligands Lomefloxacin Microbial degradation Microorganisms Molecular docking Molecular dynamics mutation Norfloxacin Ofloxacin Peroxidase Phenanthrene phenanthrenes Pollution Pollution effects Polycyclic aromatic hydrocarbons Remediation Research Article Substrate preferences Substrates Waste Water Technology Water Management Water Pollution Control |
| title | Field measures of strengthen plant-microbial remediation of PAHs-FQs compound pollution |
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