First evidence of predation on the native endangered Iberian desman (Galemys pyrenaicus) and Iberian water shrews (Neomys anomalus) by the invasive species American mink using eDNA tools in Extremadura (Spain)
Background Wildlife conservation and management aims to restore population declines, it is the vulnerable or endangered populations who require the greatest conservation efforts. In this context, non-invasive sampling has been evaluated as an option for reporting prey/predator impact. Galemys pyrena...
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creator | Ripa, Adriana Palacios-Gonzalez, María Jesús Díaz-Caballero, José A. Espinosa, Antonio Zalba, Francisco Javier García-Zapata, Juan Luis Fernádez-García, José Luis |
description | Background
Wildlife conservation and management aims to restore population declines, it is the vulnerable or endangered populations who require the greatest conservation efforts. In this context, non-invasive sampling has been evaluated as an option for reporting prey/predator impact.
Galemys pyrenaicus
is currently threatened throughout its range, and cohabits with
Nemys anomalus
, in Extremadura (Spain). Predation by American mink and otter has been suggested, but the first one is considered a serious conservation problem. This study has focused on the use of molecular methods based on RT-PCR and DNA sequencing, as it can inform on how invasive predators are harming the desman or the Iberian water shrew, and how these genetic tools can be used to detect predation.
Methods and results
Five samples (faecal and stomach contents) were received and RT-PCR assays were performed using TaqMan probes simultaneously targeting the cytochrome b (cytb) genes of
G. pyrenaicus
and
N. anomalus
, and the presence of both micromammals as prey was assessed. The predator was identified by Sanger sequencing using the nuclear IRBP gene. The assays provide a powerful tool for identification of invasive species, as in this case, but further confirmation by comparative sequence alignment by BLAST search was also necessary.
Conclusions
This study contributes to highlight simultaneously monitor and discriminate predation on specific micromammals with faecal samples of predators. Also supports the use of highly sensitive DNA analysis from samples obtained from predators as an additional methodology to monitor their effects on prey populations. |
doi_str_mv | 10.1007/s11033-024-10160-0 |
format | Article |
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Wildlife conservation and management aims to restore population declines, it is the vulnerable or endangered populations who require the greatest conservation efforts. In this context, non-invasive sampling has been evaluated as an option for reporting prey/predator impact.
Galemys pyrenaicus
is currently threatened throughout its range, and cohabits with
Nemys anomalus
, in Extremadura (Spain). Predation by American mink and otter has been suggested, but the first one is considered a serious conservation problem. This study has focused on the use of molecular methods based on RT-PCR and DNA sequencing, as it can inform on how invasive predators are harming the desman or the Iberian water shrew, and how these genetic tools can be used to detect predation.
Methods and results
Five samples (faecal and stomach contents) were received and RT-PCR assays were performed using TaqMan probes simultaneously targeting the cytochrome b (cytb) genes of
G. pyrenaicus
and
N. anomalus
, and the presence of both micromammals as prey was assessed. The predator was identified by Sanger sequencing using the nuclear IRBP gene. The assays provide a powerful tool for identification of invasive species, as in this case, but further confirmation by comparative sequence alignment by BLAST search was also necessary.
Conclusions
This study contributes to highlight simultaneously monitor and discriminate predation on specific micromammals with faecal samples of predators. Also supports the use of highly sensitive DNA analysis from samples obtained from predators as an additional methodology to monitor their effects on prey populations.</description><identifier>ISSN: 0301-4851</identifier><identifier>ISSN: 1573-4978</identifier><identifier>EISSN: 1573-4978</identifier><identifier>DOI: 10.1007/s11033-024-10160-0</identifier><identifier>PMID: 39724299</identifier><language>eng</language><publisher>Dordrecht: Springer Netherlands</publisher><subject>Animal Anatomy ; Animal Biochemistry ; Animals ; Biomedical and Life Sciences ; Brief Report ; Conservation of Natural Resources - methods ; Conserved sequence ; Cytochrome b ; Cytochromes b - genetics ; DNA probes ; DNA sequencing ; Endangered populations ; Endangered Species ; Feces ; Feces - chemistry ; Galemys pyrenaicus ; Histology ; Interphotoreceptor retinoid-binding protein ; Introduced Species ; Invasive species ; IRBP gene ; Life Sciences ; Mink - genetics ; Morphology ; Neovison vison ; Nonnative species ; Nucleotide sequence ; Polymerase chain reaction ; Population decline ; Population studies ; Predation ; Predators ; Predatory Behavior ; Prey ; Sequence Analysis, DNA - methods ; Shrews - genetics ; Spain ; Wildlife conservation</subject><ispartof>Molecular biology reports, 2024-12, Vol.52 (1), p.82</ispartof><rights>The Author(s) 2024</rights><rights>2024. The Author(s).</rights><rights>Copyright Springer Nature B.V. Dec 2025</rights><rights>The Author(s) 2024 2024</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><orcidid>0000-0002-4328-7772 ; 0000-0001-7786-1173 ; 0000-0002-8866-5626 ; 0000-0002-4659-9149 ; 0000-0002-9924-2290 ; 0000-0003-1419-1672</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s11033-024-10160-0$$EPDF$$P50$$Gspringer$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s11033-024-10160-0$$EHTML$$P50$$Gspringer$$Hfree_for_read</linktohtml><link.rule.ids>230,314,780,784,885,27924,27925,41488,42557,51319</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/39724299$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Ripa, Adriana</creatorcontrib><creatorcontrib>Palacios-Gonzalez, María Jesús</creatorcontrib><creatorcontrib>Díaz-Caballero, José A.</creatorcontrib><creatorcontrib>Espinosa, Antonio</creatorcontrib><creatorcontrib>Zalba, Francisco Javier</creatorcontrib><creatorcontrib>García-Zapata, Juan Luis</creatorcontrib><creatorcontrib>Fernádez-García, José Luis</creatorcontrib><title>First evidence of predation on the native endangered Iberian desman (Galemys pyrenaicus) and Iberian water shrews (Neomys anomalus) by the invasive species American mink using eDNA tools in Extremadura (Spain)</title><title>Molecular biology reports</title><addtitle>Mol Biol Rep</addtitle><addtitle>Mol Biol Rep</addtitle><description>Background
Wildlife conservation and management aims to restore population declines, it is the vulnerable or endangered populations who require the greatest conservation efforts. In this context, non-invasive sampling has been evaluated as an option for reporting prey/predator impact.
Galemys pyrenaicus
is currently threatened throughout its range, and cohabits with
Nemys anomalus
, in Extremadura (Spain). Predation by American mink and otter has been suggested, but the first one is considered a serious conservation problem. This study has focused on the use of molecular methods based on RT-PCR and DNA sequencing, as it can inform on how invasive predators are harming the desman or the Iberian water shrew, and how these genetic tools can be used to detect predation.
Methods and results
Five samples (faecal and stomach contents) were received and RT-PCR assays were performed using TaqMan probes simultaneously targeting the cytochrome b (cytb) genes of
G. pyrenaicus
and
N. anomalus
, and the presence of both micromammals as prey was assessed. The predator was identified by Sanger sequencing using the nuclear IRBP gene. The assays provide a powerful tool for identification of invasive species, as in this case, but further confirmation by comparative sequence alignment by BLAST search was also necessary.
Conclusions
This study contributes to highlight simultaneously monitor and discriminate predation on specific micromammals with faecal samples of predators. Also supports the use of highly sensitive DNA analysis from samples obtained from predators as an additional methodology to monitor their effects on prey populations.</description><subject>Animal Anatomy</subject><subject>Animal Biochemistry</subject><subject>Animals</subject><subject>Biomedical and Life Sciences</subject><subject>Brief Report</subject><subject>Conservation of Natural Resources - methods</subject><subject>Conserved sequence</subject><subject>Cytochrome b</subject><subject>Cytochromes b - genetics</subject><subject>DNA probes</subject><subject>DNA sequencing</subject><subject>Endangered populations</subject><subject>Endangered Species</subject><subject>Feces</subject><subject>Feces - chemistry</subject><subject>Galemys pyrenaicus</subject><subject>Histology</subject><subject>Interphotoreceptor retinoid-binding protein</subject><subject>Introduced Species</subject><subject>Invasive species</subject><subject>IRBP gene</subject><subject>Life Sciences</subject><subject>Mink - genetics</subject><subject>Morphology</subject><subject>Neovison vison</subject><subject>Nonnative species</subject><subject>Nucleotide sequence</subject><subject>Polymerase chain reaction</subject><subject>Population decline</subject><subject>Population studies</subject><subject>Predation</subject><subject>Predators</subject><subject>Predatory Behavior</subject><subject>Prey</subject><subject>Sequence Analysis, DNA - methods</subject><subject>Shrews - genetics</subject><subject>Spain</subject><subject>Wildlife conservation</subject><issn>0301-4851</issn><issn>1573-4978</issn><issn>1573-4978</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>C6C</sourceid><sourceid>EIF</sourceid><recordid>eNpdks9u1DAQxiMEoqXwAhyQJS7bQ8AT28nmhFb9R6WqHICzNXFmd10SO9jJln1M3gjvbqGAZGlkzW--mdF8WfYa-DvgvHofAbgQOS9kDhxKnvMn2TGoSuSyruZPs2MuOORyruAoexHjHedcQqWeZ0eirgpZ1PVx9vPShjgy2tiWnCHml2wI1OJovWPpjWtiLv02xMi16FaUsuy6oWDRsZZin8LsCjvqt5EN20AOrZniKUP3yN3jSIHFdaD7yGa35HcwOt9jt0Ob7b6PdRuMu05xIGMpskWfyk2q7637xqZo3YrR-e2Cjd53MfHs4scYqMd2Cshmnwe07vRl9myJXaRXD_Ek-3p58eXsY37z6er6bHGTDzCXPC-kQQXQNCVCLZVSoMBAA021rLGRZTEv50oR8EZWS2Xq1oiiEk3JS06GliBOsg8H3WFqemoNuTFgp4dgewxb7dHqfzPOrvXKbzRAWYEsyqQwe1AI_vtEcdS9jYa6Dh35KWoBslYSRFEn9O1_6J2fgkv77SmRht9Tb_4e6c8sv8-dAHEAYkrtbvkoA1zvTKUPptLJVHpvKs3FL72KwAs</recordid><startdate>20241226</startdate><enddate>20241226</enddate><creator>Ripa, Adriana</creator><creator>Palacios-Gonzalez, María Jesús</creator><creator>Díaz-Caballero, José A.</creator><creator>Espinosa, Antonio</creator><creator>Zalba, Francisco Javier</creator><creator>García-Zapata, Juan Luis</creator><creator>Fernádez-García, José Luis</creator><general>Springer Netherlands</general><general>Springer Nature B.V</general><scope>C6C</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>7TK</scope><scope>7TM</scope><scope>8FD</scope><scope>FR3</scope><scope>K9.</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-4328-7772</orcidid><orcidid>https://orcid.org/0000-0001-7786-1173</orcidid><orcidid>https://orcid.org/0000-0002-8866-5626</orcidid><orcidid>https://orcid.org/0000-0002-4659-9149</orcidid><orcidid>https://orcid.org/0000-0002-9924-2290</orcidid><orcidid>https://orcid.org/0000-0003-1419-1672</orcidid></search><sort><creationdate>20241226</creationdate><title>First evidence of predation on the native endangered Iberian desman (Galemys pyrenaicus) and Iberian water shrews (Neomys anomalus) by the invasive species American mink using eDNA tools in Extremadura (Spain)</title><author>Ripa, Adriana ; Palacios-Gonzalez, María Jesús ; Díaz-Caballero, José A. ; Espinosa, Antonio ; Zalba, Francisco Javier ; García-Zapata, Juan Luis ; Fernádez-García, José Luis</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-p1840-24ca511bb6a194555151c1b1b7f9ab46286855e10b47f5c9dc3273b6060ecef13</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Animal Anatomy</topic><topic>Animal Biochemistry</topic><topic>Animals</topic><topic>Biomedical and Life Sciences</topic><topic>Brief Report</topic><topic>Conservation of Natural Resources - methods</topic><topic>Conserved sequence</topic><topic>Cytochrome b</topic><topic>Cytochromes b - genetics</topic><topic>DNA probes</topic><topic>DNA sequencing</topic><topic>Endangered populations</topic><topic>Endangered Species</topic><topic>Feces</topic><topic>Feces - chemistry</topic><topic>Galemys pyrenaicus</topic><topic>Histology</topic><topic>Interphotoreceptor retinoid-binding protein</topic><topic>Introduced Species</topic><topic>Invasive species</topic><topic>IRBP gene</topic><topic>Life Sciences</topic><topic>Mink - genetics</topic><topic>Morphology</topic><topic>Neovison vison</topic><topic>Nonnative species</topic><topic>Nucleotide sequence</topic><topic>Polymerase chain reaction</topic><topic>Population decline</topic><topic>Population studies</topic><topic>Predation</topic><topic>Predators</topic><topic>Predatory Behavior</topic><topic>Prey</topic><topic>Sequence Analysis, DNA - methods</topic><topic>Shrews - genetics</topic><topic>Spain</topic><topic>Wildlife conservation</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ripa, Adriana</creatorcontrib><creatorcontrib>Palacios-Gonzalez, María Jesús</creatorcontrib><creatorcontrib>Díaz-Caballero, José A.</creatorcontrib><creatorcontrib>Espinosa, Antonio</creatorcontrib><creatorcontrib>Zalba, Francisco Javier</creatorcontrib><creatorcontrib>García-Zapata, Juan Luis</creatorcontrib><creatorcontrib>Fernádez-García, José Luis</creatorcontrib><collection>Springer Nature OA Free Journals</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Molecular biology reports</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Ripa, Adriana</au><au>Palacios-Gonzalez, María Jesús</au><au>Díaz-Caballero, José A.</au><au>Espinosa, Antonio</au><au>Zalba, Francisco Javier</au><au>García-Zapata, Juan Luis</au><au>Fernádez-García, José Luis</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>First evidence of predation on the native endangered Iberian desman (Galemys pyrenaicus) and Iberian water shrews (Neomys anomalus) by the invasive species American mink using eDNA tools in Extremadura (Spain)</atitle><jtitle>Molecular biology reports</jtitle><stitle>Mol Biol Rep</stitle><addtitle>Mol Biol Rep</addtitle><date>2024-12-26</date><risdate>2024</risdate><volume>52</volume><issue>1</issue><spage>82</spage><pages>82-</pages><issn>0301-4851</issn><issn>1573-4978</issn><eissn>1573-4978</eissn><abstract>Background
Wildlife conservation and management aims to restore population declines, it is the vulnerable or endangered populations who require the greatest conservation efforts. In this context, non-invasive sampling has been evaluated as an option for reporting prey/predator impact.
Galemys pyrenaicus
is currently threatened throughout its range, and cohabits with
Nemys anomalus
, in Extremadura (Spain). Predation by American mink and otter has been suggested, but the first one is considered a serious conservation problem. This study has focused on the use of molecular methods based on RT-PCR and DNA sequencing, as it can inform on how invasive predators are harming the desman or the Iberian water shrew, and how these genetic tools can be used to detect predation.
Methods and results
Five samples (faecal and stomach contents) were received and RT-PCR assays were performed using TaqMan probes simultaneously targeting the cytochrome b (cytb) genes of
G. pyrenaicus
and
N. anomalus
, and the presence of both micromammals as prey was assessed. The predator was identified by Sanger sequencing using the nuclear IRBP gene. The assays provide a powerful tool for identification of invasive species, as in this case, but further confirmation by comparative sequence alignment by BLAST search was also necessary.
Conclusions
This study contributes to highlight simultaneously monitor and discriminate predation on specific micromammals with faecal samples of predators. Also supports the use of highly sensitive DNA analysis from samples obtained from predators as an additional methodology to monitor their effects on prey populations.</abstract><cop>Dordrecht</cop><pub>Springer Netherlands</pub><pmid>39724299</pmid><doi>10.1007/s11033-024-10160-0</doi><orcidid>https://orcid.org/0000-0002-4328-7772</orcidid><orcidid>https://orcid.org/0000-0001-7786-1173</orcidid><orcidid>https://orcid.org/0000-0002-8866-5626</orcidid><orcidid>https://orcid.org/0000-0002-4659-9149</orcidid><orcidid>https://orcid.org/0000-0002-9924-2290</orcidid><orcidid>https://orcid.org/0000-0003-1419-1672</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Animal Anatomy Animal Biochemistry Animals Biomedical and Life Sciences Brief Report Conservation of Natural Resources - methods Conserved sequence Cytochrome b Cytochromes b - genetics DNA probes DNA sequencing Endangered populations Endangered Species Feces Feces - chemistry Galemys pyrenaicus Histology Interphotoreceptor retinoid-binding protein Introduced Species Invasive species IRBP gene Life Sciences Mink - genetics Morphology Neovison vison Nonnative species Nucleotide sequence Polymerase chain reaction Population decline Population studies Predation Predators Predatory Behavior Prey Sequence Analysis, DNA - methods Shrews - genetics Spain Wildlife conservation |
title | First evidence of predation on the native endangered Iberian desman (Galemys pyrenaicus) and Iberian water shrews (Neomys anomalus) by the invasive species American mink using eDNA tools in Extremadura (Spain) |
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