First evidence of predation on the native endangered Iberian desman (Galemys pyrenaicus) and Iberian water shrews (Neomys anomalus) by the invasive species American mink using eDNA tools in Extremadura (Spain)

Background Wildlife conservation and management aims to restore population declines, it is the vulnerable or endangered populations who require the greatest conservation efforts. In this context, non-invasive sampling has been evaluated as an option for reporting prey/predator impact. Galemys pyrena...

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Veröffentlicht in:Molecular biology reports 2024-12, Vol.52 (1), p.82
Hauptverfasser: Ripa, Adriana, Palacios-Gonzalez, María Jesús, Díaz-Caballero, José A., Espinosa, Antonio, Zalba, Francisco Javier, García-Zapata, Juan Luis, Fernádez-García, José Luis
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container_start_page 82
container_title Molecular biology reports
container_volume 52
creator Ripa, Adriana
Palacios-Gonzalez, María Jesús
Díaz-Caballero, José A.
Espinosa, Antonio
Zalba, Francisco Javier
García-Zapata, Juan Luis
Fernádez-García, José Luis
description Background Wildlife conservation and management aims to restore population declines, it is the vulnerable or endangered populations who require the greatest conservation efforts. In this context, non-invasive sampling has been evaluated as an option for reporting prey/predator impact. Galemys pyrenaicus is currently threatened throughout its range, and cohabits with Nemys anomalus , in Extremadura (Spain). Predation by American mink and otter has been suggested, but the first one is considered a serious conservation problem. This study has focused on the use of molecular methods based on RT-PCR and DNA sequencing, as it can inform on how invasive predators are harming the desman or the Iberian water shrew, and how these genetic tools can be used to detect predation. Methods and results Five samples (faecal and stomach contents) were received and RT-PCR assays were performed using TaqMan probes simultaneously targeting the cytochrome b (cytb) genes of G. pyrenaicus and N. anomalus , and the presence of both micromammals as prey was assessed. The predator was identified by Sanger sequencing using the nuclear IRBP gene. The assays provide a powerful tool for identification of invasive species, as in this case, but further confirmation by comparative sequence alignment by BLAST search was also necessary. Conclusions This study contributes to highlight simultaneously monitor and discriminate predation on specific micromammals with faecal samples of predators. Also supports the use of highly sensitive DNA analysis from samples obtained from predators as an additional methodology to monitor their effects on prey populations.
doi_str_mv 10.1007/s11033-024-10160-0
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In this context, non-invasive sampling has been evaluated as an option for reporting prey/predator impact. Galemys pyrenaicus is currently threatened throughout its range, and cohabits with Nemys anomalus , in Extremadura (Spain). Predation by American mink and otter has been suggested, but the first one is considered a serious conservation problem. This study has focused on the use of molecular methods based on RT-PCR and DNA sequencing, as it can inform on how invasive predators are harming the desman or the Iberian water shrew, and how these genetic tools can be used to detect predation. Methods and results Five samples (faecal and stomach contents) were received and RT-PCR assays were performed using TaqMan probes simultaneously targeting the cytochrome b (cytb) genes of G. pyrenaicus and N. anomalus , and the presence of both micromammals as prey was assessed. The predator was identified by Sanger sequencing using the nuclear IRBP gene. The assays provide a powerful tool for identification of invasive species, as in this case, but further confirmation by comparative sequence alignment by BLAST search was also necessary. Conclusions This study contributes to highlight simultaneously monitor and discriminate predation on specific micromammals with faecal samples of predators. Also supports the use of highly sensitive DNA analysis from samples obtained from predators as an additional methodology to monitor their effects on prey populations.</description><identifier>ISSN: 0301-4851</identifier><identifier>ISSN: 1573-4978</identifier><identifier>EISSN: 1573-4978</identifier><identifier>DOI: 10.1007/s11033-024-10160-0</identifier><identifier>PMID: 39724299</identifier><language>eng</language><publisher>Dordrecht: Springer Netherlands</publisher><subject>Animal Anatomy ; Animal Biochemistry ; Animals ; Biomedical and Life Sciences ; Brief Report ; Conservation of Natural Resources - methods ; Conserved sequence ; Cytochrome b ; Cytochromes b - genetics ; DNA probes ; DNA sequencing ; Endangered populations ; Endangered Species ; Feces ; Feces - chemistry ; Galemys pyrenaicus ; Histology ; Interphotoreceptor retinoid-binding protein ; Introduced Species ; Invasive species ; IRBP gene ; Life Sciences ; Mink - genetics ; Morphology ; Neovison vison ; Nonnative species ; Nucleotide sequence ; Polymerase chain reaction ; Population decline ; Population studies ; Predation ; Predators ; Predatory Behavior ; Prey ; Sequence Analysis, DNA - methods ; Shrews - genetics ; Spain ; Wildlife conservation</subject><ispartof>Molecular biology reports, 2024-12, Vol.52 (1), p.82</ispartof><rights>The Author(s) 2024</rights><rights>2024. 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In this context, non-invasive sampling has been evaluated as an option for reporting prey/predator impact. Galemys pyrenaicus is currently threatened throughout its range, and cohabits with Nemys anomalus , in Extremadura (Spain). Predation by American mink and otter has been suggested, but the first one is considered a serious conservation problem. This study has focused on the use of molecular methods based on RT-PCR and DNA sequencing, as it can inform on how invasive predators are harming the desman or the Iberian water shrew, and how these genetic tools can be used to detect predation. Methods and results Five samples (faecal and stomach contents) were received and RT-PCR assays were performed using TaqMan probes simultaneously targeting the cytochrome b (cytb) genes of G. pyrenaicus and N. anomalus , and the presence of both micromammals as prey was assessed. The predator was identified by Sanger sequencing using the nuclear IRBP gene. The assays provide a powerful tool for identification of invasive species, as in this case, but further confirmation by comparative sequence alignment by BLAST search was also necessary. Conclusions This study contributes to highlight simultaneously monitor and discriminate predation on specific micromammals with faecal samples of predators. 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In this context, non-invasive sampling has been evaluated as an option for reporting prey/predator impact. Galemys pyrenaicus is currently threatened throughout its range, and cohabits with Nemys anomalus , in Extremadura (Spain). Predation by American mink and otter has been suggested, but the first one is considered a serious conservation problem. This study has focused on the use of molecular methods based on RT-PCR and DNA sequencing, as it can inform on how invasive predators are harming the desman or the Iberian water shrew, and how these genetic tools can be used to detect predation. Methods and results Five samples (faecal and stomach contents) were received and RT-PCR assays were performed using TaqMan probes simultaneously targeting the cytochrome b (cytb) genes of G. pyrenaicus and N. anomalus , and the presence of both micromammals as prey was assessed. The predator was identified by Sanger sequencing using the nuclear IRBP gene. The assays provide a powerful tool for identification of invasive species, as in this case, but further confirmation by comparative sequence alignment by BLAST search was also necessary. Conclusions This study contributes to highlight simultaneously monitor and discriminate predation on specific micromammals with faecal samples of predators. Also supports the use of highly sensitive DNA analysis from samples obtained from predators as an additional methodology to monitor their effects on prey populations.</abstract><cop>Dordrecht</cop><pub>Springer Netherlands</pub><pmid>39724299</pmid><doi>10.1007/s11033-024-10160-0</doi><orcidid>https://orcid.org/0000-0002-4328-7772</orcidid><orcidid>https://orcid.org/0000-0001-7786-1173</orcidid><orcidid>https://orcid.org/0000-0002-8866-5626</orcidid><orcidid>https://orcid.org/0000-0002-4659-9149</orcidid><orcidid>https://orcid.org/0000-0002-9924-2290</orcidid><orcidid>https://orcid.org/0000-0003-1419-1672</orcidid><oa>free_for_read</oa></addata></record>
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subjects Animal Anatomy
Animal Biochemistry
Animals
Biomedical and Life Sciences
Brief Report
Conservation of Natural Resources - methods
Conserved sequence
Cytochrome b
Cytochromes b - genetics
DNA probes
DNA sequencing
Endangered populations
Endangered Species
Feces
Feces - chemistry
Galemys pyrenaicus
Histology
Interphotoreceptor retinoid-binding protein
Introduced Species
Invasive species
IRBP gene
Life Sciences
Mink - genetics
Morphology
Neovison vison
Nonnative species
Nucleotide sequence
Polymerase chain reaction
Population decline
Population studies
Predation
Predators
Predatory Behavior
Prey
Sequence Analysis, DNA - methods
Shrews - genetics
Spain
Wildlife conservation
title First evidence of predation on the native endangered Iberian desman (Galemys pyrenaicus) and Iberian water shrews (Neomys anomalus) by the invasive species American mink using eDNA tools in Extremadura (Spain)
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