USP8 Mutations Associated with Cushing's Disease Alter Protein Structure Dynamics
The adenomas in Cushing's disease frequently exhibit mutations in exon 14, within a binding motif for the regulatory protein 14-3-3 located between the catalytic domain (DUB), responsible for ubiquitin hydrolysis, and the WW-like domain that mediates autoinhibition, resulting in constantly acti...
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creator | Petukhova, Natalia Poluzerova, Anastasia Bug, Dmitry Nerubenko, Elena Kostareva, Anna Tsoy, Uliana Dmitrieva, Renata |
description | The adenomas in Cushing's disease frequently exhibit mutations in exon 14, within a binding motif for the regulatory protein 14-3-3 located between the catalytic domain (DUB), responsible for ubiquitin hydrolysis, and the WW-like domain that mediates autoinhibition, resulting in constantly active USP8. The exact molecular mechanism of deubiquitinase activity disruption in Cushing's disease remains unclear. To address this, Sanger sequencing of
was performed to identify mutations in corticotropinomas. These mutations were subjected to computational screening, followed by molecular dynamics simulations to assess the structural alterations that might change the biological activity of USP8. Eight different variants of the
gene were identified both within and outside the "hotspot" region. Six of these had previously been reported in Cushing's disease, while two were detected for the first time in our patients with CD. One of the two new variants, initially classified as benign during screening, was found in the neighboring SH3 binding motif at a distance of 20 amino acids. This variant demonstrated pathogenicity patterns similar to those of known pathogenic variants. All
variants identified in our patients caused conformational changes in the USP8 protein in a similar manner. The identified mutations, despite differences in annotation results-including evolutionary conservation assessments, automated predictor data, and variations in localization within exon 14-exhibit similar patterns of protein conformational change. This suggests a pathogenic effect that contributes to the development of CD. |
doi_str_mv | 10.3390/ijms252312697 |
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was performed to identify mutations in corticotropinomas. These mutations were subjected to computational screening, followed by molecular dynamics simulations to assess the structural alterations that might change the biological activity of USP8. Eight different variants of the
gene were identified both within and outside the "hotspot" region. Six of these had previously been reported in Cushing's disease, while two were detected for the first time in our patients with CD. One of the two new variants, initially classified as benign during screening, was found in the neighboring SH3 binding motif at a distance of 20 amino acids. This variant demonstrated pathogenicity patterns similar to those of known pathogenic variants. All
variants identified in our patients caused conformational changes in the USP8 protein in a similar manner. The identified mutations, despite differences in annotation results-including evolutionary conservation assessments, automated predictor data, and variations in localization within exon 14-exhibit similar patterns of protein conformational change. This suggests a pathogenic effect that contributes to the development of CD.</description><identifier>ISSN: 1422-0067</identifier><identifier>ISSN: 1661-6596</identifier><identifier>EISSN: 1422-0067</identifier><identifier>DOI: 10.3390/ijms252312697</identifier><identifier>PMID: 39684405</identifier><language>eng</language><publisher>Switzerland: MDPI AG</publisher><subject>Adult ; Amino acids ; Automation ; Blood proteins ; Diseases ; DNA sequencing ; Endopeptidases - chemistry ; Endopeptidases - genetics ; Endopeptidases - metabolism ; Endosomal Sorting Complexes Required for Transport - chemistry ; Endosomal Sorting Complexes Required for Transport - genetics ; Endosomal Sorting Complexes Required for Transport - metabolism ; Female ; Flexibility ; Genetic aspects ; Humans ; Hydrolysis ; Male ; Massachusetts ; Middle Aged ; Molecular dynamics ; Molecular Dynamics Simulation ; Mutation ; Nucleotide sequencing ; Phosphorylation ; Pituitary ACTH Hypersecretion - genetics ; Protein binding ; Protein Conformation ; Proteins ; Tumors ; Ubiquitin ; Ubiquitin Thiolesterase - chemistry ; Ubiquitin Thiolesterase - genetics ; Ubiquitin Thiolesterase - metabolism</subject><ispartof>International journal of molecular sciences, 2024-12, Vol.25 (23), p.12697</ispartof><rights>COPYRIGHT 2024 MDPI AG</rights><rights>2024 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c2641-9184f0359a5fb43e6b75d475f9dd5199dec0670e26d73ce74a17f15d9bd1a93e3</cites><orcidid>0000-0002-9349-6257 ; 0009-0004-6629-8652 ; 0000-0002-5849-1311 ; 0009-0000-7392-0930 ; 0000-0002-3073-7914 ; 0000-0001-6397-824X</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/39684405$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Petukhova, Natalia</creatorcontrib><creatorcontrib>Poluzerova, Anastasia</creatorcontrib><creatorcontrib>Bug, Dmitry</creatorcontrib><creatorcontrib>Nerubenko, Elena</creatorcontrib><creatorcontrib>Kostareva, Anna</creatorcontrib><creatorcontrib>Tsoy, Uliana</creatorcontrib><creatorcontrib>Dmitrieva, Renata</creatorcontrib><title>USP8 Mutations Associated with Cushing's Disease Alter Protein Structure Dynamics</title><title>International journal of molecular sciences</title><addtitle>Int J Mol Sci</addtitle><description>The adenomas in Cushing's disease frequently exhibit mutations in exon 14, within a binding motif for the regulatory protein 14-3-3 located between the catalytic domain (DUB), responsible for ubiquitin hydrolysis, and the WW-like domain that mediates autoinhibition, resulting in constantly active USP8. The exact molecular mechanism of deubiquitinase activity disruption in Cushing's disease remains unclear. To address this, Sanger sequencing of
was performed to identify mutations in corticotropinomas. These mutations were subjected to computational screening, followed by molecular dynamics simulations to assess the structural alterations that might change the biological activity of USP8. Eight different variants of the
gene were identified both within and outside the "hotspot" region. Six of these had previously been reported in Cushing's disease, while two were detected for the first time in our patients with CD. One of the two new variants, initially classified as benign during screening, was found in the neighboring SH3 binding motif at a distance of 20 amino acids. This variant demonstrated pathogenicity patterns similar to those of known pathogenic variants. All
variants identified in our patients caused conformational changes in the USP8 protein in a similar manner. The identified mutations, despite differences in annotation results-including evolutionary conservation assessments, automated predictor data, and variations in localization within exon 14-exhibit similar patterns of protein conformational change. This suggests a pathogenic effect that contributes to the development of CD.</description><subject>Adult</subject><subject>Amino acids</subject><subject>Automation</subject><subject>Blood proteins</subject><subject>Diseases</subject><subject>DNA sequencing</subject><subject>Endopeptidases - chemistry</subject><subject>Endopeptidases - genetics</subject><subject>Endopeptidases - metabolism</subject><subject>Endosomal Sorting Complexes Required for Transport - chemistry</subject><subject>Endosomal Sorting Complexes Required for Transport - genetics</subject><subject>Endosomal Sorting Complexes Required for Transport - metabolism</subject><subject>Female</subject><subject>Flexibility</subject><subject>Genetic aspects</subject><subject>Humans</subject><subject>Hydrolysis</subject><subject>Male</subject><subject>Massachusetts</subject><subject>Middle Aged</subject><subject>Molecular dynamics</subject><subject>Molecular Dynamics Simulation</subject><subject>Mutation</subject><subject>Nucleotide sequencing</subject><subject>Phosphorylation</subject><subject>Pituitary ACTH Hypersecretion - 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chemistry</topic><topic>Endopeptidases - genetics</topic><topic>Endopeptidases - metabolism</topic><topic>Endosomal Sorting Complexes Required for Transport - chemistry</topic><topic>Endosomal Sorting Complexes Required for Transport - genetics</topic><topic>Endosomal Sorting Complexes Required for Transport - metabolism</topic><topic>Female</topic><topic>Flexibility</topic><topic>Genetic aspects</topic><topic>Humans</topic><topic>Hydrolysis</topic><topic>Male</topic><topic>Massachusetts</topic><topic>Middle Aged</topic><topic>Molecular dynamics</topic><topic>Molecular Dynamics Simulation</topic><topic>Mutation</topic><topic>Nucleotide sequencing</topic><topic>Phosphorylation</topic><topic>Pituitary ACTH Hypersecretion - genetics</topic><topic>Protein binding</topic><topic>Protein Conformation</topic><topic>Proteins</topic><topic>Tumors</topic><topic>Ubiquitin</topic><topic>Ubiquitin Thiolesterase - chemistry</topic><topic>Ubiquitin Thiolesterase - genetics</topic><topic>Ubiquitin Thiolesterase - 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Academic</collection><jtitle>International journal of molecular sciences</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Petukhova, Natalia</au><au>Poluzerova, Anastasia</au><au>Bug, Dmitry</au><au>Nerubenko, Elena</au><au>Kostareva, Anna</au><au>Tsoy, Uliana</au><au>Dmitrieva, Renata</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>USP8 Mutations Associated with Cushing's Disease Alter Protein Structure Dynamics</atitle><jtitle>International journal of molecular sciences</jtitle><addtitle>Int J Mol Sci</addtitle><date>2024-12-01</date><risdate>2024</risdate><volume>25</volume><issue>23</issue><spage>12697</spage><pages>12697-</pages><issn>1422-0067</issn><issn>1661-6596</issn><eissn>1422-0067</eissn><abstract>The adenomas in Cushing's disease frequently exhibit mutations in exon 14, within a binding motif for the regulatory protein 14-3-3 located between the catalytic domain (DUB), responsible for ubiquitin hydrolysis, and the WW-like domain that mediates autoinhibition, resulting in constantly active USP8. The exact molecular mechanism of deubiquitinase activity disruption in Cushing's disease remains unclear. To address this, Sanger sequencing of
was performed to identify mutations in corticotropinomas. These mutations were subjected to computational screening, followed by molecular dynamics simulations to assess the structural alterations that might change the biological activity of USP8. Eight different variants of the
gene were identified both within and outside the "hotspot" region. Six of these had previously been reported in Cushing's disease, while two were detected for the first time in our patients with CD. One of the two new variants, initially classified as benign during screening, was found in the neighboring SH3 binding motif at a distance of 20 amino acids. This variant demonstrated pathogenicity patterns similar to those of known pathogenic variants. All
variants identified in our patients caused conformational changes in the USP8 protein in a similar manner. The identified mutations, despite differences in annotation results-including evolutionary conservation assessments, automated predictor data, and variations in localization within exon 14-exhibit similar patterns of protein conformational change. This suggests a pathogenic effect that contributes to the development of CD.</abstract><cop>Switzerland</cop><pub>MDPI AG</pub><pmid>39684405</pmid><doi>10.3390/ijms252312697</doi><orcidid>https://orcid.org/0000-0002-9349-6257</orcidid><orcidid>https://orcid.org/0009-0004-6629-8652</orcidid><orcidid>https://orcid.org/0000-0002-5849-1311</orcidid><orcidid>https://orcid.org/0009-0000-7392-0930</orcidid><orcidid>https://orcid.org/0000-0002-3073-7914</orcidid><orcidid>https://orcid.org/0000-0001-6397-824X</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Adult Amino acids Automation Blood proteins Diseases DNA sequencing Endopeptidases - chemistry Endopeptidases - genetics Endopeptidases - metabolism Endosomal Sorting Complexes Required for Transport - chemistry Endosomal Sorting Complexes Required for Transport - genetics Endosomal Sorting Complexes Required for Transport - metabolism Female Flexibility Genetic aspects Humans Hydrolysis Male Massachusetts Middle Aged Molecular dynamics Molecular Dynamics Simulation Mutation Nucleotide sequencing Phosphorylation Pituitary ACTH Hypersecretion - genetics Protein binding Protein Conformation Proteins Tumors Ubiquitin Ubiquitin Thiolesterase - chemistry Ubiquitin Thiolesterase - genetics Ubiquitin Thiolesterase - metabolism |
title | USP8 Mutations Associated with Cushing's Disease Alter Protein Structure Dynamics |
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