Translation of circular RNAs

Circular RNAs (circRNAs) are covalently closed RNAs that are present in all eukaryotes tested. Recent RNA sequencing (RNA-seq) analyses indicate that although generally less abundant than messenger RNAs (mRNAs), over 1.8 million circRNA isoforms exist in humans, much more than the number of currentl...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Nucleic acids research 2024-12
Hauptverfasser: Margvelani, Giorgi, Maquera, Karol Andrea Arizaca, Welden, Justin Ralph, Rodgers, David W, Stamm, Stefan
Format: Artikel
Sprache:eng
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page
container_issue
container_start_page
container_title Nucleic acids research
container_volume
creator Margvelani, Giorgi
Maquera, Karol Andrea Arizaca
Welden, Justin Ralph
Rodgers, David W
Stamm, Stefan
description Circular RNAs (circRNAs) are covalently closed RNAs that are present in all eukaryotes tested. Recent RNA sequencing (RNA-seq) analyses indicate that although generally less abundant than messenger RNAs (mRNAs), over 1.8 million circRNA isoforms exist in humans, much more than the number of currently known mRNA isoforms. Most circRNAs are generated through backsplicing that depends on pre-mRNA structures, which are influenced by intronic elements, for example, primate-specific Alu elements, leading to species-specific circRNAs. CircRNAs are mostly cytosolic, stable and some were shown to influence cells by sequestering miRNAs and RNA-binding proteins. We review the increasing evidence that circRNAs are translated into proteins using several cap-independent translational mechanisms, that include internal ribosomal entry sites, N6-methyladenosine RNA modification, adenosine to inosine RNA editing and interaction with the eIF4A3 component of the exon junction complex. CircRNAs are translated under conditions that favor cap-independent translation, notably in cancer and generate proteins that are shorter than mRNA-encoded proteins, which can acquire new functions relevant in diseases.
doi_str_mv 10.1093/nar/gkae1167
format Article
fullrecord <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_3146627473</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>3146627473</sourcerecordid><originalsourceid>FETCH-LOGICAL-c216t-b41c12e83dcc13146b049ad40567d2788104ef03b4e44fe5af13d6f941c10ae63</originalsourceid><addsrcrecordid>eNo9kL1PwzAQRy0EoqWwMSLUkYHQO_viJGNV8SVVIKEyW45jo0A-ip0M_e9J1JbplndPPz3GrhEeEDKxaLRffP1oiyiTEzZFIXlEmeSnbAoC4giB0gm7COEbAAljOmcTkUkJMuZTdrPxugmV7sq2mbdubkpv-kr7-cfbMlyyM6erYK8Od8Y-nx43q5do_f78ulquI8NRdlFOaJDbVBTGoECSOVCmC4JYJgVP0nSYYB2InCyRs7F2KArpsvENtJVixu723q1vf3sbOlWXwdiq0o1t-6BGp-QJJWJA7_eo8W0I3jq19WWt_U4hqLGHGnqoY48Bvz2Y-7y2xT98DCD-AM23Wjs</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>3146627473</pqid></control><display><type>article</type><title>Translation of circular RNAs</title><source>DOAJ Directory of Open Access Journals</source><source>Oxford Journals Open Access Collection</source><source>PubMed Central</source><source>Free Full-Text Journals in Chemistry</source><creator>Margvelani, Giorgi ; Maquera, Karol Andrea Arizaca ; Welden, Justin Ralph ; Rodgers, David W ; Stamm, Stefan</creator><creatorcontrib>Margvelani, Giorgi ; Maquera, Karol Andrea Arizaca ; Welden, Justin Ralph ; Rodgers, David W ; Stamm, Stefan</creatorcontrib><description>Circular RNAs (circRNAs) are covalently closed RNAs that are present in all eukaryotes tested. Recent RNA sequencing (RNA-seq) analyses indicate that although generally less abundant than messenger RNAs (mRNAs), over 1.8 million circRNA isoforms exist in humans, much more than the number of currently known mRNA isoforms. Most circRNAs are generated through backsplicing that depends on pre-mRNA structures, which are influenced by intronic elements, for example, primate-specific Alu elements, leading to species-specific circRNAs. CircRNAs are mostly cytosolic, stable and some were shown to influence cells by sequestering miRNAs and RNA-binding proteins. We review the increasing evidence that circRNAs are translated into proteins using several cap-independent translational mechanisms, that include internal ribosomal entry sites, N6-methyladenosine RNA modification, adenosine to inosine RNA editing and interaction with the eIF4A3 component of the exon junction complex. CircRNAs are translated under conditions that favor cap-independent translation, notably in cancer and generate proteins that are shorter than mRNA-encoded proteins, which can acquire new functions relevant in diseases.</description><identifier>ISSN: 0305-1048</identifier><identifier>ISSN: 1362-4962</identifier><identifier>EISSN: 1362-4962</identifier><identifier>DOI: 10.1093/nar/gkae1167</identifier><identifier>PMID: 39660652</identifier><language>eng</language><publisher>England</publisher><ispartof>Nucleic acids research, 2024-12</ispartof><rights>The Author(s) 2024. Published by Oxford University Press on behalf of Nucleic Acids Research.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c216t-b41c12e83dcc13146b049ad40567d2788104ef03b4e44fe5af13d6f941c10ae63</cites><orcidid>0000-0002-9420-7912</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,864,27922,27923</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/39660652$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Margvelani, Giorgi</creatorcontrib><creatorcontrib>Maquera, Karol Andrea Arizaca</creatorcontrib><creatorcontrib>Welden, Justin Ralph</creatorcontrib><creatorcontrib>Rodgers, David W</creatorcontrib><creatorcontrib>Stamm, Stefan</creatorcontrib><title>Translation of circular RNAs</title><title>Nucleic acids research</title><addtitle>Nucleic Acids Res</addtitle><description>Circular RNAs (circRNAs) are covalently closed RNAs that are present in all eukaryotes tested. Recent RNA sequencing (RNA-seq) analyses indicate that although generally less abundant than messenger RNAs (mRNAs), over 1.8 million circRNA isoforms exist in humans, much more than the number of currently known mRNA isoforms. Most circRNAs are generated through backsplicing that depends on pre-mRNA structures, which are influenced by intronic elements, for example, primate-specific Alu elements, leading to species-specific circRNAs. CircRNAs are mostly cytosolic, stable and some were shown to influence cells by sequestering miRNAs and RNA-binding proteins. We review the increasing evidence that circRNAs are translated into proteins using several cap-independent translational mechanisms, that include internal ribosomal entry sites, N6-methyladenosine RNA modification, adenosine to inosine RNA editing and interaction with the eIF4A3 component of the exon junction complex. CircRNAs are translated under conditions that favor cap-independent translation, notably in cancer and generate proteins that are shorter than mRNA-encoded proteins, which can acquire new functions relevant in diseases.</description><issn>0305-1048</issn><issn>1362-4962</issn><issn>1362-4962</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><recordid>eNo9kL1PwzAQRy0EoqWwMSLUkYHQO_viJGNV8SVVIKEyW45jo0A-ip0M_e9J1JbplndPPz3GrhEeEDKxaLRffP1oiyiTEzZFIXlEmeSnbAoC4giB0gm7COEbAAljOmcTkUkJMuZTdrPxugmV7sq2mbdubkpv-kr7-cfbMlyyM6erYK8Od8Y-nx43q5do_f78ulquI8NRdlFOaJDbVBTGoECSOVCmC4JYJgVP0nSYYB2InCyRs7F2KArpsvENtJVixu723q1vf3sbOlWXwdiq0o1t-6BGp-QJJWJA7_eo8W0I3jq19WWt_U4hqLGHGnqoY48Bvz2Y-7y2xT98DCD-AM23Wjs</recordid><startdate>20241211</startdate><enddate>20241211</enddate><creator>Margvelani, Giorgi</creator><creator>Maquera, Karol Andrea Arizaca</creator><creator>Welden, Justin Ralph</creator><creator>Rodgers, David W</creator><creator>Stamm, Stefan</creator><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-9420-7912</orcidid></search><sort><creationdate>20241211</creationdate><title>Translation of circular RNAs</title><author>Margvelani, Giorgi ; Maquera, Karol Andrea Arizaca ; Welden, Justin Ralph ; Rodgers, David W ; Stamm, Stefan</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c216t-b41c12e83dcc13146b049ad40567d2788104ef03b4e44fe5af13d6f941c10ae63</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Margvelani, Giorgi</creatorcontrib><creatorcontrib>Maquera, Karol Andrea Arizaca</creatorcontrib><creatorcontrib>Welden, Justin Ralph</creatorcontrib><creatorcontrib>Rodgers, David W</creatorcontrib><creatorcontrib>Stamm, Stefan</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Nucleic acids research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Margvelani, Giorgi</au><au>Maquera, Karol Andrea Arizaca</au><au>Welden, Justin Ralph</au><au>Rodgers, David W</au><au>Stamm, Stefan</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Translation of circular RNAs</atitle><jtitle>Nucleic acids research</jtitle><addtitle>Nucleic Acids Res</addtitle><date>2024-12-11</date><risdate>2024</risdate><issn>0305-1048</issn><issn>1362-4962</issn><eissn>1362-4962</eissn><abstract>Circular RNAs (circRNAs) are covalently closed RNAs that are present in all eukaryotes tested. Recent RNA sequencing (RNA-seq) analyses indicate that although generally less abundant than messenger RNAs (mRNAs), over 1.8 million circRNA isoforms exist in humans, much more than the number of currently known mRNA isoforms. Most circRNAs are generated through backsplicing that depends on pre-mRNA structures, which are influenced by intronic elements, for example, primate-specific Alu elements, leading to species-specific circRNAs. CircRNAs are mostly cytosolic, stable and some were shown to influence cells by sequestering miRNAs and RNA-binding proteins. We review the increasing evidence that circRNAs are translated into proteins using several cap-independent translational mechanisms, that include internal ribosomal entry sites, N6-methyladenosine RNA modification, adenosine to inosine RNA editing and interaction with the eIF4A3 component of the exon junction complex. CircRNAs are translated under conditions that favor cap-independent translation, notably in cancer and generate proteins that are shorter than mRNA-encoded proteins, which can acquire new functions relevant in diseases.</abstract><cop>England</cop><pmid>39660652</pmid><doi>10.1093/nar/gkae1167</doi><orcidid>https://orcid.org/0000-0002-9420-7912</orcidid><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 0305-1048
ispartof Nucleic acids research, 2024-12
issn 0305-1048
1362-4962
1362-4962
language eng
recordid cdi_proquest_miscellaneous_3146627473
source DOAJ Directory of Open Access Journals; Oxford Journals Open Access Collection; PubMed Central; Free Full-Text Journals in Chemistry
title Translation of circular RNAs
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-10T09%3A07%3A41IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Translation%20of%20circular%20RNAs&rft.jtitle=Nucleic%20acids%20research&rft.au=Margvelani,%20Giorgi&rft.date=2024-12-11&rft.issn=0305-1048&rft.eissn=1362-4962&rft_id=info:doi/10.1093/nar/gkae1167&rft_dat=%3Cproquest_cross%3E3146627473%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=3146627473&rft_id=info:pmid/39660652&rfr_iscdi=true