Similarity between oxygen evolution in photosystem II and oxygen reduction in cytochrome c oxidase via proton coupled electron transfers. A unified view of the oxygenic life from four electron oxidation–reduction reactions

Basic concepts and theoretical foundations of broken symmetry (BS) and post BS methods for strongly correlated electron systems (SCES) such as electron-transfer (ET) diradical, multi-center polyradicals with spin frustration are described systematically to elucidate structures, bonding and reactivit...

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Veröffentlicht in:Photochemical & photobiological sciences 2024-12, Vol.23 (12), p.2133-2155
Hauptverfasser: Yamaguchi, Kizashi, Miyagawa, Koichi, Shoji, Mitsuo, Isobe, Hiroshi, Kawakami, Takashi
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container_issue 12
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container_title Photochemical & photobiological sciences
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creator Yamaguchi, Kizashi
Miyagawa, Koichi
Shoji, Mitsuo
Isobe, Hiroshi
Kawakami, Takashi
description Basic concepts and theoretical foundations of broken symmetry (BS) and post BS methods for strongly correlated electron systems (SCES) such as electron-transfer (ET) diradical, multi-center polyradicals with spin frustration are described systematically to elucidate structures, bonding and reactivity of the high-valent transition metal oxo bonds in metalloenzymes: photosystem II (PSII) and cytochrome c oxidase (C c O). BS hybrid DFT (HDFT) and DLPNO coupled-cluster (CC) SD(T 0 ) computations are performed to elucidate electronic and spin states of CaMn 4 O x cluster in the key step for oxygen evolution, namely S 4 [S 3 with Mn(IV) = O + Tyr161-O radical] state of PSII and P M [Fe(IV) = O + HO-Cu(II) + Tyr161-O radical] step for oxygen reduction in C c O. The cycle of water oxidation catalyzed by the CaMn 4 O x cluster in PSII and the cycle of oxygen reduction catalyzed by the Cu A -Fe a -Fe a3 -Cu B cluster in C c O are examined on the theoretical grounds, elucidating similar concerted and/or stepwise proton transfer coupled electron transfer (PT-ET) processes for the four-electron oxidation in PSII and four-electron reduction in C c O. Interplay between theory and experiments have revealed that three electrons in the metal sites and one electron in tyrosine radical site are characteristic for PT-ET in these biological redox reaction systems, indicating no necessity of harmful Mn(V) = O and Fe(V) = O bonds with strong oxyl-radical character. Implications of the computational results are discussed in relation to design of artificial systems consisted of earth abundant transition metals for water oxidation. Graphical abstract
doi_str_mv 10.1007/s43630-024-00648-w
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BS hybrid DFT (HDFT) and DLPNO coupled-cluster (CC) SD(T 0 ) computations are performed to elucidate electronic and spin states of CaMn 4 O x cluster in the key step for oxygen evolution, namely S 4 [S 3 with Mn(IV) = O + Tyr161-O radical] state of PSII and P M [Fe(IV) = O + HO-Cu(II) + Tyr161-O radical] step for oxygen reduction in C c O. The cycle of water oxidation catalyzed by the CaMn 4 O x cluster in PSII and the cycle of oxygen reduction catalyzed by the Cu A -Fe a -Fe a3 -Cu B cluster in C c O are examined on the theoretical grounds, elucidating similar concerted and/or stepwise proton transfer coupled electron transfer (PT-ET) processes for the four-electron oxidation in PSII and four-electron reduction in C c O. Interplay between theory and experiments have revealed that three electrons in the metal sites and one electron in tyrosine radical site are characteristic for PT-ET in these biological redox reaction systems, indicating no necessity of harmful Mn(V) = O and Fe(V) = O bonds with strong oxyl-radical character. Implications of the computational results are discussed in relation to design of artificial systems consisted of earth abundant transition metals for water oxidation. 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BS hybrid DFT (HDFT) and DLPNO coupled-cluster (CC) SD(T 0 ) computations are performed to elucidate electronic and spin states of CaMn 4 O x cluster in the key step for oxygen evolution, namely S 4 [S 3 with Mn(IV) = O + Tyr161-O radical] state of PSII and P M [Fe(IV) = O + HO-Cu(II) + Tyr161-O radical] step for oxygen reduction in C c O. The cycle of water oxidation catalyzed by the CaMn 4 O x cluster in PSII and the cycle of oxygen reduction catalyzed by the Cu A -Fe a -Fe a3 -Cu B cluster in C c O are examined on the theoretical grounds, elucidating similar concerted and/or stepwise proton transfer coupled electron transfer (PT-ET) processes for the four-electron oxidation in PSII and four-electron reduction in C c O. Interplay between theory and experiments have revealed that three electrons in the metal sites and one electron in tyrosine radical site are characteristic for PT-ET in these biological redox reaction systems, indicating no necessity of harmful Mn(V) = O and Fe(V) = O bonds with strong oxyl-radical character. Implications of the computational results are discussed in relation to design of artificial systems consisted of earth abundant transition metals for water oxidation. 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BS hybrid DFT (HDFT) and DLPNO coupled-cluster (CC) SD(T 0 ) computations are performed to elucidate electronic and spin states of CaMn 4 O x cluster in the key step for oxygen evolution, namely S 4 [S 3 with Mn(IV) = O + Tyr161-O radical] state of PSII and P M [Fe(IV) = O + HO-Cu(II) + Tyr161-O radical] step for oxygen reduction in C c O. The cycle of water oxidation catalyzed by the CaMn 4 O x cluster in PSII and the cycle of oxygen reduction catalyzed by the Cu A -Fe a -Fe a3 -Cu B cluster in C c O are examined on the theoretical grounds, elucidating similar concerted and/or stepwise proton transfer coupled electron transfer (PT-ET) processes for the four-electron oxidation in PSII and four-electron reduction in C c O. Interplay between theory and experiments have revealed that three electrons in the metal sites and one electron in tyrosine radical site are characteristic for PT-ET in these biological redox reaction systems, indicating no necessity of harmful Mn(V) = O and Fe(V) = O bonds with strong oxyl-radical character. Implications of the computational results are discussed in relation to design of artificial systems consisted of earth abundant transition metals for water oxidation. Graphical abstract</abstract><cop>Cham</cop><pub>Springer International Publishing</pub><pmid>39576557</pmid><doi>10.1007/s43630-024-00648-w</doi><tpages>23</tpages><orcidid>https://orcid.org/0000-0002-4411-7425</orcidid><orcidid>https://orcid.org/0000-0001-7465-6326</orcidid><orcidid>https://orcid.org/0000-0002-1990-1904</orcidid><orcidid>https://orcid.org/0000-0002-7409-3727</orcidid><oa>free_for_read</oa></addata></record>
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subjects Biochemistry
Biomaterials
Chemistry
Chemistry and Materials Science
Density Functional Theory
Electron Transport
Electron Transport Complex IV - chemistry
Electron Transport Complex IV - metabolism
Electrons
Original Papers
Oxidation-Reduction
Oxygen - chemistry
Oxygen - metabolism
Photosystem II Protein Complex - chemistry
Photosystem II Protein Complex - metabolism
Physical Chemistry
Plant Sciences
Protons
title Similarity between oxygen evolution in photosystem II and oxygen reduction in cytochrome c oxidase via proton coupled electron transfers. A unified view of the oxygenic life from four electron oxidation–reduction reactions
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