Mitogenome diversity and evolution of Bos indicus cattle in India
•Divergence of Bos indicus haplotypes into I1 and I2 haplogroups occurred within Indian subcontinent.•Domestication events for Bos taurus and Bos indicus occurred separately from genetically distinct auroch groups.•Separation between zebu and taurine cattle predates the domestication of zebu cattle....
Gespeichert in:
Veröffentlicht in: | Gene 2025-02, Vol.936, p.149096, Article 149096 |
---|---|
Hauptverfasser: | , , , |
Format: | Artikel |
Sprache: | eng |
Schlagworte: | |
Online-Zugang: | Volltext |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
container_end_page | |
---|---|
container_issue | |
container_start_page | 149096 |
container_title | Gene |
container_volume | 936 |
creator | Sarath Kumar, T. Singh, Sanjeev Ganguly, Indrajit Dixit, S.P. |
description | •Divergence of Bos indicus haplotypes into I1 and I2 haplogroups occurred within Indian subcontinent.•Domestication events for Bos taurus and Bos indicus occurred separately from genetically distinct auroch groups.•Separation between zebu and taurine cattle predates the domestication of zebu cattle.•Higher genetic diversity exists in Indicine cattle (Bos indicus) in comparision to taurine (Bos taurus) cattle.
Mitochondrial DNA has been widely utilized as a valuable tool for studying the evolutionary and demographic history both within and between different livestock speciesover the past three decades. Evaluation of the evolutionary history, population structure and genetic diversity is imperative for their productivity, ecosystem services, and breeding and conservation strategies for effective management. The present study included complete mitogenome of 78 cattle, out of which 33 samples belonged to 6 Bos indicus breeds of India. Mitogenome diversity of zebu cattle within population (π- nucleotide, haplotype diversity) was estimated using DnaSP v6 software and between populations (FST ratio, AMOVA analysis) was estimated using Arlequin 3.5.2.2. Ladakhi breed showed maximum (π = 0.00645) while Gir (π = 0.00042) and Tharparkar (π = 0.00053) showed minimum diversity. The diversity between the breeds of Indian cattle was 16.34 %. There were 13 and 14 haplotypes in each of I1 and I2 halogroups respectively suggesting that the divergence of Bos indicus haplotypes likely occurred within the Indian subcontinent. The Bos indicus and Bos taurus cattle lineages separated approximately 0.75 million years ago. The divergence pattern observed in zebu cattle highlighted the probability of a distinct ancestor and supported notion of independent divergence of Bos indicus. |
doi_str_mv | 10.1016/j.gene.2024.149096 |
format | Article |
fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_3128979183</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><els_id>S0378111924009776</els_id><sourcerecordid>3128979183</sourcerecordid><originalsourceid>FETCH-LOGICAL-c237t-9803de095d06eba7ed6743d744ec0c823958517f8398343fa2951e6ee5b9c2e63</originalsourceid><addsrcrecordid>eNp9kMtOwzAQRS0EoqXwAyyQl2wS_EhiW2IDFY9KRWxgbbn2BLlK4hInlfr3uGphyWxGM7r3auYgdE1JTgmt7tb5F3SQM8KKnBaKqOoETakUKiOEy1M0JVzIjFKqJugixjVJVZbsHE24KgvBKzZFD29-CCkmtICd30If_bDDpnMYtqEZBx86HGr8GCL2nfN2jNiaYWggjXiRNuYSndWmiXB17DP0-fz0MX_Nlu8vi_nDMrOMiyFTknAHRJWOVLAyAlwlCu5EUYAlVrJ0kiypqCVXkhe8NkyVFCqAcqUsg4rP0O0hd9OH7xHioFsfLTSN6SCMUXPKpBKKSp6k7CC1fYixh1pvet-afqcp0Xt0eq336PQenT6gS6abY_64asH9WX5ZJcH9QQDpy62HXkfrobPgfA920C74__J_ACBZfk4</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>3128979183</pqid></control><display><type>article</type><title>Mitogenome diversity and evolution of Bos indicus cattle in India</title><source>MEDLINE</source><source>Elsevier ScienceDirect Journals Complete</source><creator>Sarath Kumar, T. ; Singh, Sanjeev ; Ganguly, Indrajit ; Dixit, S.P.</creator><creatorcontrib>Sarath Kumar, T. ; Singh, Sanjeev ; Ganguly, Indrajit ; Dixit, S.P.</creatorcontrib><description>•Divergence of Bos indicus haplotypes into I1 and I2 haplogroups occurred within Indian subcontinent.•Domestication events for Bos taurus and Bos indicus occurred separately from genetically distinct auroch groups.•Separation between zebu and taurine cattle predates the domestication of zebu cattle.•Higher genetic diversity exists in Indicine cattle (Bos indicus) in comparision to taurine (Bos taurus) cattle.
Mitochondrial DNA has been widely utilized as a valuable tool for studying the evolutionary and demographic history both within and between different livestock speciesover the past three decades. Evaluation of the evolutionary history, population structure and genetic diversity is imperative for their productivity, ecosystem services, and breeding and conservation strategies for effective management. The present study included complete mitogenome of 78 cattle, out of which 33 samples belonged to 6 Bos indicus breeds of India. Mitogenome diversity of zebu cattle within population (π- nucleotide, haplotype diversity) was estimated using DnaSP v6 software and between populations (FST ratio, AMOVA analysis) was estimated using Arlequin 3.5.2.2. Ladakhi breed showed maximum (π = 0.00645) while Gir (π = 0.00042) and Tharparkar (π = 0.00053) showed minimum diversity. The diversity between the breeds of Indian cattle was 16.34 %. There were 13 and 14 haplotypes in each of I1 and I2 halogroups respectively suggesting that the divergence of Bos indicus haplotypes likely occurred within the Indian subcontinent. The Bos indicus and Bos taurus cattle lineages separated approximately 0.75 million years ago. The divergence pattern observed in zebu cattle highlighted the probability of a distinct ancestor and supported notion of independent divergence of Bos indicus.</description><identifier>ISSN: 0378-1119</identifier><identifier>ISSN: 1879-0038</identifier><identifier>EISSN: 1879-0038</identifier><identifier>DOI: 10.1016/j.gene.2024.149096</identifier><identifier>PMID: 39547362</identifier><language>eng</language><publisher>Netherlands: Elsevier B.V</publisher><subject>Animals ; Breeding ; Cattle - genetics ; Divergence ; DNA, Mitochondrial - genetics ; Evolution ; Evolution, Molecular ; Genetic Variation ; Genome, Mitochondrial ; Haplotypes ; India ; Mitogenome ; Phylogeny</subject><ispartof>Gene, 2025-02, Vol.936, p.149096, Article 149096</ispartof><rights>2024</rights><rights>Copyright © 2024. Published by Elsevier B.V.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c237t-9803de095d06eba7ed6743d744ec0c823958517f8398343fa2951e6ee5b9c2e63</cites><orcidid>0000-0001-6591-1487 ; 0000-0001-9612-8014 ; 0000-0002-7840-6305</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.gene.2024.149096$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,780,784,3550,27924,27925,45995</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/39547362$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Sarath Kumar, T.</creatorcontrib><creatorcontrib>Singh, Sanjeev</creatorcontrib><creatorcontrib>Ganguly, Indrajit</creatorcontrib><creatorcontrib>Dixit, S.P.</creatorcontrib><title>Mitogenome diversity and evolution of Bos indicus cattle in India</title><title>Gene</title><addtitle>Gene</addtitle><description>•Divergence of Bos indicus haplotypes into I1 and I2 haplogroups occurred within Indian subcontinent.•Domestication events for Bos taurus and Bos indicus occurred separately from genetically distinct auroch groups.•Separation between zebu and taurine cattle predates the domestication of zebu cattle.•Higher genetic diversity exists in Indicine cattle (Bos indicus) in comparision to taurine (Bos taurus) cattle.
Mitochondrial DNA has been widely utilized as a valuable tool for studying the evolutionary and demographic history both within and between different livestock speciesover the past three decades. Evaluation of the evolutionary history, population structure and genetic diversity is imperative for their productivity, ecosystem services, and breeding and conservation strategies for effective management. The present study included complete mitogenome of 78 cattle, out of which 33 samples belonged to 6 Bos indicus breeds of India. Mitogenome diversity of zebu cattle within population (π- nucleotide, haplotype diversity) was estimated using DnaSP v6 software and between populations (FST ratio, AMOVA analysis) was estimated using Arlequin 3.5.2.2. Ladakhi breed showed maximum (π = 0.00645) while Gir (π = 0.00042) and Tharparkar (π = 0.00053) showed minimum diversity. The diversity between the breeds of Indian cattle was 16.34 %. There were 13 and 14 haplotypes in each of I1 and I2 halogroups respectively suggesting that the divergence of Bos indicus haplotypes likely occurred within the Indian subcontinent. The Bos indicus and Bos taurus cattle lineages separated approximately 0.75 million years ago. The divergence pattern observed in zebu cattle highlighted the probability of a distinct ancestor and supported notion of independent divergence of Bos indicus.</description><subject>Animals</subject><subject>Breeding</subject><subject>Cattle - genetics</subject><subject>Divergence</subject><subject>DNA, Mitochondrial - genetics</subject><subject>Evolution</subject><subject>Evolution, Molecular</subject><subject>Genetic Variation</subject><subject>Genome, Mitochondrial</subject><subject>Haplotypes</subject><subject>India</subject><subject>Mitogenome</subject><subject>Phylogeny</subject><issn>0378-1119</issn><issn>1879-0038</issn><issn>1879-0038</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2025</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kMtOwzAQRS0EoqXwAyyQl2wS_EhiW2IDFY9KRWxgbbn2BLlK4hInlfr3uGphyWxGM7r3auYgdE1JTgmt7tb5F3SQM8KKnBaKqOoETakUKiOEy1M0JVzIjFKqJugixjVJVZbsHE24KgvBKzZFD29-CCkmtICd30If_bDDpnMYtqEZBx86HGr8GCL2nfN2jNiaYWggjXiRNuYSndWmiXB17DP0-fz0MX_Nlu8vi_nDMrOMiyFTknAHRJWOVLAyAlwlCu5EUYAlVrJ0kiypqCVXkhe8NkyVFCqAcqUsg4rP0O0hd9OH7xHioFsfLTSN6SCMUXPKpBKKSp6k7CC1fYixh1pvet-afqcp0Xt0eq336PQenT6gS6abY_64asH9WX5ZJcH9QQDpy62HXkfrobPgfA920C74__J_ACBZfk4</recordid><startdate>20250205</startdate><enddate>20250205</enddate><creator>Sarath Kumar, T.</creator><creator>Singh, Sanjeev</creator><creator>Ganguly, Indrajit</creator><creator>Dixit, S.P.</creator><general>Elsevier B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0001-6591-1487</orcidid><orcidid>https://orcid.org/0000-0001-9612-8014</orcidid><orcidid>https://orcid.org/0000-0002-7840-6305</orcidid></search><sort><creationdate>20250205</creationdate><title>Mitogenome diversity and evolution of Bos indicus cattle in India</title><author>Sarath Kumar, T. ; Singh, Sanjeev ; Ganguly, Indrajit ; Dixit, S.P.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c237t-9803de095d06eba7ed6743d744ec0c823958517f8398343fa2951e6ee5b9c2e63</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2025</creationdate><topic>Animals</topic><topic>Breeding</topic><topic>Cattle - genetics</topic><topic>Divergence</topic><topic>DNA, Mitochondrial - genetics</topic><topic>Evolution</topic><topic>Evolution, Molecular</topic><topic>Genetic Variation</topic><topic>Genome, Mitochondrial</topic><topic>Haplotypes</topic><topic>India</topic><topic>Mitogenome</topic><topic>Phylogeny</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Sarath Kumar, T.</creatorcontrib><creatorcontrib>Singh, Sanjeev</creatorcontrib><creatorcontrib>Ganguly, Indrajit</creatorcontrib><creatorcontrib>Dixit, S.P.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Gene</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Sarath Kumar, T.</au><au>Singh, Sanjeev</au><au>Ganguly, Indrajit</au><au>Dixit, S.P.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Mitogenome diversity and evolution of Bos indicus cattle in India</atitle><jtitle>Gene</jtitle><addtitle>Gene</addtitle><date>2025-02-05</date><risdate>2025</risdate><volume>936</volume><spage>149096</spage><pages>149096-</pages><artnum>149096</artnum><issn>0378-1119</issn><issn>1879-0038</issn><eissn>1879-0038</eissn><abstract>•Divergence of Bos indicus haplotypes into I1 and I2 haplogroups occurred within Indian subcontinent.•Domestication events for Bos taurus and Bos indicus occurred separately from genetically distinct auroch groups.•Separation between zebu and taurine cattle predates the domestication of zebu cattle.•Higher genetic diversity exists in Indicine cattle (Bos indicus) in comparision to taurine (Bos taurus) cattle.
Mitochondrial DNA has been widely utilized as a valuable tool for studying the evolutionary and demographic history both within and between different livestock speciesover the past three decades. Evaluation of the evolutionary history, population structure and genetic diversity is imperative for their productivity, ecosystem services, and breeding and conservation strategies for effective management. The present study included complete mitogenome of 78 cattle, out of which 33 samples belonged to 6 Bos indicus breeds of India. Mitogenome diversity of zebu cattle within population (π- nucleotide, haplotype diversity) was estimated using DnaSP v6 software and between populations (FST ratio, AMOVA analysis) was estimated using Arlequin 3.5.2.2. Ladakhi breed showed maximum (π = 0.00645) while Gir (π = 0.00042) and Tharparkar (π = 0.00053) showed minimum diversity. The diversity between the breeds of Indian cattle was 16.34 %. There were 13 and 14 haplotypes in each of I1 and I2 halogroups respectively suggesting that the divergence of Bos indicus haplotypes likely occurred within the Indian subcontinent. The Bos indicus and Bos taurus cattle lineages separated approximately 0.75 million years ago. The divergence pattern observed in zebu cattle highlighted the probability of a distinct ancestor and supported notion of independent divergence of Bos indicus.</abstract><cop>Netherlands</cop><pub>Elsevier B.V</pub><pmid>39547362</pmid><doi>10.1016/j.gene.2024.149096</doi><orcidid>https://orcid.org/0000-0001-6591-1487</orcidid><orcidid>https://orcid.org/0000-0001-9612-8014</orcidid><orcidid>https://orcid.org/0000-0002-7840-6305</orcidid></addata></record> |
fulltext | fulltext |
identifier | ISSN: 0378-1119 |
ispartof | Gene, 2025-02, Vol.936, p.149096, Article 149096 |
issn | 0378-1119 1879-0038 1879-0038 |
language | eng |
recordid | cdi_proquest_miscellaneous_3128979183 |
source | MEDLINE; Elsevier ScienceDirect Journals Complete |
subjects | Animals Breeding Cattle - genetics Divergence DNA, Mitochondrial - genetics Evolution Evolution, Molecular Genetic Variation Genome, Mitochondrial Haplotypes India Mitogenome Phylogeny |
title | Mitogenome diversity and evolution of Bos indicus cattle in India |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-25T12%3A57%3A36IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Mitogenome%20diversity%20and%20evolution%20of%20Bos%20indicus%20cattle%20in%20India&rft.jtitle=Gene&rft.au=Sarath%20Kumar,%20T.&rft.date=2025-02-05&rft.volume=936&rft.spage=149096&rft.pages=149096-&rft.artnum=149096&rft.issn=0378-1119&rft.eissn=1879-0038&rft_id=info:doi/10.1016/j.gene.2024.149096&rft_dat=%3Cproquest_cross%3E3128979183%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=3128979183&rft_id=info:pmid/39547362&rft_els_id=S0378111924009776&rfr_iscdi=true |