Comparison analysis of ABCG subfamily in bamboo and the potential function of PeABCG15 in monolignol transport
Lignin is a principal component of secondary cell wall and plays vital roles in various biological processes. In this study, 68 and 42 members of ABC transporter G subfamily (ABCG) were identified in Bambusa amplexicaulis and Olyra latifolia, which were less than that of 77 in moso bamboo (Phyllosta...
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description | Lignin is a principal component of secondary cell wall and plays vital roles in various biological processes. In this study, 68 and 42 members of ABC transporter G subfamily (ABCG) were identified in Bambusa amplexicaulis and Olyra latifolia, which were less than that of 77 in moso bamboo (Phyllostachys edulis). Collinearity analysis showed that ABCGs had undergone robust purifying selection with lower functional differentiation. These ABCGs were clustered into two clades of WBC and PDR. Notably, PeABCG15 was highly expressed with the lignification of bamboo shoot. The WGCNA revealed that PeABCG15 was co-expressed with eight MYB genes, among which PeMYB203 was able to activate PeABCG15 validated by Y1H, DLR, and GUS assays. Furthermore, over-expressing PeABCG15 significantly enhanced the content of lignin and the expression levels of monolignol biosynthetic genes in Arabidopsis thaliana, conferring improved tolerance to exogenous coniferyl alcohol. Collectively, our findings elucidated the prospective contribution of PeABCG15 to monolignol transport, providing insights into the lignin biosynthesis mechanism in bamboo.
•ABCG members in three bamboos species were relatively conserved.•PeMYB203 activated the expression of PeABCG15 by directly binding to its promoter.•Overexpressing PeABCG15 enhanced lignin content and conferred tolerance of exogenous monolignol in A. thaliana transgenic lines. |
doi_str_mv | 10.1016/j.plaphy.2024.109278 |
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•ABCG members in three bamboos species were relatively conserved.•PeMYB203 activated the expression of PeABCG15 by directly binding to its promoter.•Overexpressing PeABCG15 enhanced lignin content and conferred tolerance of exogenous monolignol in A. thaliana transgenic lines.</description><identifier>ISSN: 0981-9428</identifier><identifier>ISSN: 1873-2690</identifier><identifier>EISSN: 1873-2690</identifier><identifier>DOI: 10.1016/j.plaphy.2024.109278</identifier><identifier>PMID: 39536506</identifier><language>eng</language><publisher>France: Elsevier Masson SAS</publisher><subject>ABCG transporter ; Arabidopsis - genetics ; Arabidopsis - metabolism ; ATP Binding Cassette Transporter, Subfamily G - genetics ; ATP Binding Cassette Transporter, Subfamily G - metabolism ; Bamboo ; Bambusa - genetics ; Bambusa - metabolism ; Biological Transport ; Cell wall ; Gene Expression Regulation, Plant ; Lignin ; Lignin - metabolism ; Monolignol transport ; Phylogeny ; Plant Proteins - genetics ; Plant Proteins - metabolism ; Poaceae - genetics ; Poaceae - metabolism</subject><ispartof>Plant physiology and biochemistry, 2024-12, Vol.217, p.109278, Article 109278</ispartof><rights>2024 Elsevier Masson SAS</rights><rights>Copyright © 2024 Elsevier Masson SAS. All rights reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c241t-4407f5cb7cbbd6bcc4316cb9e82d25a1f0675268baed9e52724d53e57b21c8ca3</cites><orcidid>0009-0001-0445-7716</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.plaphy.2024.109278$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,780,784,3550,27924,27925,45995</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/39536506$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Li, Hui</creatorcontrib><creatorcontrib>Li, Ziyang</creatorcontrib><creatorcontrib>Yang, Kebin</creatorcontrib><creatorcontrib>Lin, Zeming</creatorcontrib><creatorcontrib>Zhu, Chenglei</creatorcontrib><creatorcontrib>Liu, Yan</creatorcontrib><creatorcontrib>Gao, Zhimin</creatorcontrib><title>Comparison analysis of ABCG subfamily in bamboo and the potential function of PeABCG15 in monolignol transport</title><title>Plant physiology and biochemistry</title><addtitle>Plant Physiol Biochem</addtitle><description>Lignin is a principal component of secondary cell wall and plays vital roles in various biological processes. In this study, 68 and 42 members of ABC transporter G subfamily (ABCG) were identified in Bambusa amplexicaulis and Olyra latifolia, which were less than that of 77 in moso bamboo (Phyllostachys edulis). Collinearity analysis showed that ABCGs had undergone robust purifying selection with lower functional differentiation. These ABCGs were clustered into two clades of WBC and PDR. Notably, PeABCG15 was highly expressed with the lignification of bamboo shoot. The WGCNA revealed that PeABCG15 was co-expressed with eight MYB genes, among which PeMYB203 was able to activate PeABCG15 validated by Y1H, DLR, and GUS assays. Furthermore, over-expressing PeABCG15 significantly enhanced the content of lignin and the expression levels of monolignol biosynthetic genes in Arabidopsis thaliana, conferring improved tolerance to exogenous coniferyl alcohol. Collectively, our findings elucidated the prospective contribution of PeABCG15 to monolignol transport, providing insights into the lignin biosynthesis mechanism in bamboo.
•ABCG members in three bamboos species were relatively conserved.•PeMYB203 activated the expression of PeABCG15 by directly binding to its promoter.•Overexpressing PeABCG15 enhanced lignin content and conferred tolerance of exogenous monolignol in A. thaliana transgenic lines.</description><subject>ABCG transporter</subject><subject>Arabidopsis - genetics</subject><subject>Arabidopsis - metabolism</subject><subject>ATP Binding Cassette Transporter, Subfamily G - genetics</subject><subject>ATP Binding Cassette Transporter, Subfamily G - metabolism</subject><subject>Bamboo</subject><subject>Bambusa - genetics</subject><subject>Bambusa - metabolism</subject><subject>Biological Transport</subject><subject>Cell wall</subject><subject>Gene Expression Regulation, Plant</subject><subject>Lignin</subject><subject>Lignin - metabolism</subject><subject>Monolignol transport</subject><subject>Phylogeny</subject><subject>Plant Proteins - genetics</subject><subject>Plant Proteins - metabolism</subject><subject>Poaceae - genetics</subject><subject>Poaceae - metabolism</subject><issn>0981-9428</issn><issn>1873-2690</issn><issn>1873-2690</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kMtu3CAUQFHUKpmk_YOqYtmNJ4ANxptIySgvKVK6aNcI8HXDyAYXcKT5-zBy0mU3IKFzuLoHoW-UbCmh4nK_nUc9vxy2jLCmPHWslSdoQ2VbV0x05BPakE7SqmuYPEPnKe0JKWRbn6KzuuO14ERskN-FadbRpeCx9no8JJdwGPD1ze4ep8UMenLjATuPjZ5MCAXqcX4BPIcMPjs94mHxNrviF-0nHEXKj8IUfBjdn3LgHLVPc4j5C_o86DHB1_f7Av2-u_21e6ienu8fd9dPlWUNzVXTkHbg1rTWmF4Ya5uaCms6kKxnXNOBiJYzIY2GvgPOWtb0vAbeGkattLq-QD_Wf-cY_i6QsppcsjCO2kNYkqopk5IK2bGCNitqY0gpwqDm6CYdD4oSdSyt9motrY6l1Vq6aN_fJyxmgv6f9JG2AFcrAGXPVwdRJevAW-hdBJtVH9z_J7wBrnWR7g</recordid><startdate>202412</startdate><enddate>202412</enddate><creator>Li, Hui</creator><creator>Li, Ziyang</creator><creator>Yang, Kebin</creator><creator>Lin, Zeming</creator><creator>Zhu, Chenglei</creator><creator>Liu, Yan</creator><creator>Gao, Zhimin</creator><general>Elsevier Masson SAS</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0009-0001-0445-7716</orcidid></search><sort><creationdate>202412</creationdate><title>Comparison analysis of ABCG subfamily in bamboo and the potential function of PeABCG15 in monolignol transport</title><author>Li, Hui ; Li, Ziyang ; Yang, Kebin ; Lin, Zeming ; Zhu, Chenglei ; Liu, Yan ; Gao, Zhimin</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c241t-4407f5cb7cbbd6bcc4316cb9e82d25a1f0675268baed9e52724d53e57b21c8ca3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>ABCG transporter</topic><topic>Arabidopsis - genetics</topic><topic>Arabidopsis - metabolism</topic><topic>ATP Binding Cassette Transporter, Subfamily G - genetics</topic><topic>ATP Binding Cassette Transporter, Subfamily G - metabolism</topic><topic>Bamboo</topic><topic>Bambusa - genetics</topic><topic>Bambusa - metabolism</topic><topic>Biological Transport</topic><topic>Cell wall</topic><topic>Gene Expression Regulation, Plant</topic><topic>Lignin</topic><topic>Lignin - metabolism</topic><topic>Monolignol transport</topic><topic>Phylogeny</topic><topic>Plant Proteins - genetics</topic><topic>Plant Proteins - metabolism</topic><topic>Poaceae - genetics</topic><topic>Poaceae - metabolism</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Li, Hui</creatorcontrib><creatorcontrib>Li, Ziyang</creatorcontrib><creatorcontrib>Yang, Kebin</creatorcontrib><creatorcontrib>Lin, Zeming</creatorcontrib><creatorcontrib>Zhu, Chenglei</creatorcontrib><creatorcontrib>Liu, Yan</creatorcontrib><creatorcontrib>Gao, Zhimin</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Plant physiology and biochemistry</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Li, Hui</au><au>Li, Ziyang</au><au>Yang, Kebin</au><au>Lin, Zeming</au><au>Zhu, Chenglei</au><au>Liu, Yan</au><au>Gao, Zhimin</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Comparison analysis of ABCG subfamily in bamboo and the potential function of PeABCG15 in monolignol transport</atitle><jtitle>Plant physiology and biochemistry</jtitle><addtitle>Plant Physiol Biochem</addtitle><date>2024-12</date><risdate>2024</risdate><volume>217</volume><spage>109278</spage><pages>109278-</pages><artnum>109278</artnum><issn>0981-9428</issn><issn>1873-2690</issn><eissn>1873-2690</eissn><abstract>Lignin is a principal component of secondary cell wall and plays vital roles in various biological processes. In this study, 68 and 42 members of ABC transporter G subfamily (ABCG) were identified in Bambusa amplexicaulis and Olyra latifolia, which were less than that of 77 in moso bamboo (Phyllostachys edulis). Collinearity analysis showed that ABCGs had undergone robust purifying selection with lower functional differentiation. These ABCGs were clustered into two clades of WBC and PDR. Notably, PeABCG15 was highly expressed with the lignification of bamboo shoot. The WGCNA revealed that PeABCG15 was co-expressed with eight MYB genes, among which PeMYB203 was able to activate PeABCG15 validated by Y1H, DLR, and GUS assays. Furthermore, over-expressing PeABCG15 significantly enhanced the content of lignin and the expression levels of monolignol biosynthetic genes in Arabidopsis thaliana, conferring improved tolerance to exogenous coniferyl alcohol. Collectively, our findings elucidated the prospective contribution of PeABCG15 to monolignol transport, providing insights into the lignin biosynthesis mechanism in bamboo.
•ABCG members in three bamboos species were relatively conserved.•PeMYB203 activated the expression of PeABCG15 by directly binding to its promoter.•Overexpressing PeABCG15 enhanced lignin content and conferred tolerance of exogenous monolignol in A. thaliana transgenic lines.</abstract><cop>France</cop><pub>Elsevier Masson SAS</pub><pmid>39536506</pmid><doi>10.1016/j.plaphy.2024.109278</doi><orcidid>https://orcid.org/0009-0001-0445-7716</orcidid></addata></record> |
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subjects | ABCG transporter Arabidopsis - genetics Arabidopsis - metabolism ATP Binding Cassette Transporter, Subfamily G - genetics ATP Binding Cassette Transporter, Subfamily G - metabolism Bamboo Bambusa - genetics Bambusa - metabolism Biological Transport Cell wall Gene Expression Regulation, Plant Lignin Lignin - metabolism Monolignol transport Phylogeny Plant Proteins - genetics Plant Proteins - metabolism Poaceae - genetics Poaceae - metabolism |
title | Comparison analysis of ABCG subfamily in bamboo and the potential function of PeABCG15 in monolignol transport |
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