Effects of volcanic environment on Setaria viridis rhizospheric soil microbial keystone taxa and ecosystem multifunctionality
Keystone taxa are significant within ecosystem multifunctionality, as certain species fulfil essential functions such as recycling soil nutrients, promoting plant growth, influencing biogeochemical processes, and contributing to human health maintenance. However, there are still gaps regarding the r...
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| Veröffentlicht in: | Environmental research 2024-12, Vol.263 (Pt 3), p.120262, Article 120262 |
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| creator | Cui, Ye Xu, Daolong Luo, Wumei Zhai, Yuxin Dai, Yiming Ji, Chunxiang Li, Xiaoyu Chen, Jin |
| description | Keystone taxa are significant within ecosystem multifunctionality, as certain species fulfil essential functions such as recycling soil nutrients, promoting plant growth, influencing biogeochemical processes, and contributing to human health maintenance. However, there are still gaps regarding the relationship between microbial communities in volcanic rhizospheric soil and ecosystem multifunctionality. As a result, in this research, we employed Illumina MiSeq high-throughput sequencing to analyse the microbial community composition of rhizospheric soil from volcanic S. viridis. Compared with non-volcanic areas, volcanic soils have higher fungal alpha diversity and the absolute abundance of bacteria (16S gene copies) showed significant variation between the two successions (P |
| doi_str_mv | 10.1016/j.envres.2024.120262 |
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•Volcanic soils have more keystone taxa.•Volcanic soils have higher fungal alpha diversity.•Volcanic soils had less SOC and lower cbbLR content than non-volcanic soils.•Fungal communities have more core microbes and are more closely related to EMF.</description><identifier>ISSN: 0013-9351</identifier><identifier>ISSN: 1096-0953</identifier><identifier>EISSN: 1096-0953</identifier><identifier>DOI: 10.1016/j.envres.2024.120262</identifier><identifier>PMID: 39481779</identifier><language>eng</language><publisher>Netherlands: Elsevier Inc</publisher><subject>Bacteria - classification ; Bacteria - genetics ; Bacteria - isolation & purification ; Co-occurrence networks ; Ecosystem ; Ecosystem multifunctionality ; Fungi - classification ; Fungi - genetics ; Fungi - isolation & purification ; Microbiota ; Rhizosphere ; Setaria Plant - microbiology ; Setaria viridis L ; Soil Microbiology ; Volcanic Eruptions ; Volcanic soil</subject><ispartof>Environmental research, 2024-12, Vol.263 (Pt 3), p.120262, Article 120262</ispartof><rights>2024 Elsevier Inc.</rights><rights>Copyright © 2024 Elsevier Inc. All rights reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c241t-49b005aa46c8f0a9c402d28e278693396451e786612dbf42f44bd26c71f98ad13</cites><orcidid>0000-0002-0123-5093 ; 0000-0002-4239-6635 ; 0009-0002-0324-2841</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.envres.2024.120262$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,780,784,3550,27924,27925,45995</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/39481779$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Cui, Ye</creatorcontrib><creatorcontrib>Xu, Daolong</creatorcontrib><creatorcontrib>Luo, Wumei</creatorcontrib><creatorcontrib>Zhai, Yuxin</creatorcontrib><creatorcontrib>Dai, Yiming</creatorcontrib><creatorcontrib>Ji, Chunxiang</creatorcontrib><creatorcontrib>Li, Xiaoyu</creatorcontrib><creatorcontrib>Chen, Jin</creatorcontrib><title>Effects of volcanic environment on Setaria viridis rhizospheric soil microbial keystone taxa and ecosystem multifunctionality</title><title>Environmental research</title><addtitle>Environ Res</addtitle><description>Keystone taxa are significant within ecosystem multifunctionality, as certain species fulfil essential functions such as recycling soil nutrients, promoting plant growth, influencing biogeochemical processes, and contributing to human health maintenance. However, there are still gaps regarding the relationship between microbial communities in volcanic rhizospheric soil and ecosystem multifunctionality. As a result, in this research, we employed Illumina MiSeq high-throughput sequencing to analyse the microbial community composition of rhizospheric soil from volcanic S. viridis. Compared with non-volcanic areas, volcanic soils have higher fungal alpha diversity and the absolute abundance of bacteria (16S gene copies) showed significant variation between the two successions (P < 0.0001). The network analysis further demonstrated that the microbial diversity in non-volcanic regions surpassed that of the volcanic area. The volcanic fungi network has more nodes and edges, is more complex than non-volcanic areas (Nodes: 425 vs. 770; Edges: 21844 vs. 74532), and more rhizosphere growth-promoting bacteria are enriched. Regression analysis and correlation networks showed that fungal communities were more closely associated with ecosystem multifunctionality than bacteria. This study lays the groundwork for examining the microbial keystone taxa in the rhizosphere of volcanic plants and offers valuable insights into the multifaceted functions of plant rhizospheric soil ecosystems.
[Display omitted]
•Volcanic soils have more keystone taxa.•Volcanic soils have higher fungal alpha diversity.•Volcanic soils had less SOC and lower cbbLR content than non-volcanic soils.•Fungal communities have more core microbes and are more closely related to EMF.</description><subject>Bacteria - classification</subject><subject>Bacteria - genetics</subject><subject>Bacteria - isolation & purification</subject><subject>Co-occurrence networks</subject><subject>Ecosystem</subject><subject>Ecosystem multifunctionality</subject><subject>Fungi - classification</subject><subject>Fungi - genetics</subject><subject>Fungi - isolation & purification</subject><subject>Microbiota</subject><subject>Rhizosphere</subject><subject>Setaria Plant - microbiology</subject><subject>Setaria viridis L</subject><subject>Soil Microbiology</subject><subject>Volcanic Eruptions</subject><subject>Volcanic soil</subject><issn>0013-9351</issn><issn>1096-0953</issn><issn>1096-0953</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kUuLFDEQgIMo7rj6D0Ry9NJjXv3IRZBl1YUFD-o5pNMVtsbuZEzSgyP4383Sq8e9JKniqyrqCyGvOdtzxrt3hz2EU4K8F0yoPa9nJ56QHWe6a5hu5VOyY4zLRsuWX5AXOR9qyFvJnpMLqdXA-17vyJ9r78GVTKOnpzg7G9DR2hhTDAuEQmOgX6HYhJbWJE6YabrD3zEf7yBVNkec6YIuxRHtTH_AOZcYgBb7y1IbJgou5pqDhS7rXNCvwRWMwc5Yzi_JM2_nDK8e7kvy_eP1t6vPze2XTzdXH24bJxQvjdIjY621qnODZ1Y7xcQkBhD90GkpdadaDvXdcTGNXgmv1DiJzvXc68FOXF6St1vfY4o_V8jFLJgdzLMNENdsJBeS9VL0fUXVhtaNck7gzTHhYtPZcGbuxZuD2cSbe_FmE1_L3jxMWMcFpv9F_0xX4P0GQN3zhJBMdgjBwYSpfoCZIj4-4S83hZjy</recordid><startdate>20241215</startdate><enddate>20241215</enddate><creator>Cui, Ye</creator><creator>Xu, Daolong</creator><creator>Luo, Wumei</creator><creator>Zhai, Yuxin</creator><creator>Dai, Yiming</creator><creator>Ji, Chunxiang</creator><creator>Li, Xiaoyu</creator><creator>Chen, Jin</creator><general>Elsevier Inc</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-0123-5093</orcidid><orcidid>https://orcid.org/0000-0002-4239-6635</orcidid><orcidid>https://orcid.org/0009-0002-0324-2841</orcidid></search><sort><creationdate>20241215</creationdate><title>Effects of volcanic environment on Setaria viridis rhizospheric soil microbial keystone taxa and ecosystem multifunctionality</title><author>Cui, Ye ; Xu, Daolong ; Luo, Wumei ; Zhai, Yuxin ; Dai, Yiming ; Ji, Chunxiang ; Li, Xiaoyu ; Chen, Jin</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c241t-49b005aa46c8f0a9c402d28e278693396451e786612dbf42f44bd26c71f98ad13</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Bacteria - classification</topic><topic>Bacteria - genetics</topic><topic>Bacteria - isolation & purification</topic><topic>Co-occurrence networks</topic><topic>Ecosystem</topic><topic>Ecosystem multifunctionality</topic><topic>Fungi - classification</topic><topic>Fungi - genetics</topic><topic>Fungi - isolation & purification</topic><topic>Microbiota</topic><topic>Rhizosphere</topic><topic>Setaria Plant - microbiology</topic><topic>Setaria viridis L</topic><topic>Soil Microbiology</topic><topic>Volcanic Eruptions</topic><topic>Volcanic soil</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Cui, Ye</creatorcontrib><creatorcontrib>Xu, Daolong</creatorcontrib><creatorcontrib>Luo, Wumei</creatorcontrib><creatorcontrib>Zhai, Yuxin</creatorcontrib><creatorcontrib>Dai, Yiming</creatorcontrib><creatorcontrib>Ji, Chunxiang</creatorcontrib><creatorcontrib>Li, Xiaoyu</creatorcontrib><creatorcontrib>Chen, Jin</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Environmental research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Cui, Ye</au><au>Xu, Daolong</au><au>Luo, Wumei</au><au>Zhai, Yuxin</au><au>Dai, Yiming</au><au>Ji, Chunxiang</au><au>Li, Xiaoyu</au><au>Chen, Jin</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Effects of volcanic environment on Setaria viridis rhizospheric soil microbial keystone taxa and ecosystem multifunctionality</atitle><jtitle>Environmental research</jtitle><addtitle>Environ Res</addtitle><date>2024-12-15</date><risdate>2024</risdate><volume>263</volume><issue>Pt 3</issue><spage>120262</spage><pages>120262-</pages><artnum>120262</artnum><issn>0013-9351</issn><issn>1096-0953</issn><eissn>1096-0953</eissn><abstract>Keystone taxa are significant within ecosystem multifunctionality, as certain species fulfil essential functions such as recycling soil nutrients, promoting plant growth, influencing biogeochemical processes, and contributing to human health maintenance. However, there are still gaps regarding the relationship between microbial communities in volcanic rhizospheric soil and ecosystem multifunctionality. As a result, in this research, we employed Illumina MiSeq high-throughput sequencing to analyse the microbial community composition of rhizospheric soil from volcanic S. viridis. Compared with non-volcanic areas, volcanic soils have higher fungal alpha diversity and the absolute abundance of bacteria (16S gene copies) showed significant variation between the two successions (P < 0.0001). The network analysis further demonstrated that the microbial diversity in non-volcanic regions surpassed that of the volcanic area. The volcanic fungi network has more nodes and edges, is more complex than non-volcanic areas (Nodes: 425 vs. 770; Edges: 21844 vs. 74532), and more rhizosphere growth-promoting bacteria are enriched. Regression analysis and correlation networks showed that fungal communities were more closely associated with ecosystem multifunctionality than bacteria. This study lays the groundwork for examining the microbial keystone taxa in the rhizosphere of volcanic plants and offers valuable insights into the multifaceted functions of plant rhizospheric soil ecosystems.
[Display omitted]
•Volcanic soils have more keystone taxa.•Volcanic soils have higher fungal alpha diversity.•Volcanic soils had less SOC and lower cbbLR content than non-volcanic soils.•Fungal communities have more core microbes and are more closely related to EMF.</abstract><cop>Netherlands</cop><pub>Elsevier Inc</pub><pmid>39481779</pmid><doi>10.1016/j.envres.2024.120262</doi><orcidid>https://orcid.org/0000-0002-0123-5093</orcidid><orcidid>https://orcid.org/0000-0002-4239-6635</orcidid><orcidid>https://orcid.org/0009-0002-0324-2841</orcidid></addata></record> |
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| subjects | Bacteria - classification Bacteria - genetics Bacteria - isolation & purification Co-occurrence networks Ecosystem Ecosystem multifunctionality Fungi - classification Fungi - genetics Fungi - isolation & purification Microbiota Rhizosphere Setaria Plant - microbiology Setaria viridis L Soil Microbiology Volcanic Eruptions Volcanic soil |
| title | Effects of volcanic environment on Setaria viridis rhizospheric soil microbial keystone taxa and ecosystem multifunctionality |
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