Comprehensive characterization of gibberellin oxidase gene family in Brassica napus reveals BnGA2ox15 involved in hormone signaling and response to drought stress
Brassica napus is a well-known allopolyploid oil crop with high commercial potential. Gibberellin oxidase (GAox) is an essential enzyme that activates gibberellins, which regulate plant growth, and development, and have a significant impact on plant responses to abiotic stress. However, the comprehe...
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container_title | International journal of biological macromolecules |
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creator | Qin, Tongjun Huang, Qian Li, Juanjuan Ayyaz, Ahsan Farooq, Muhammad Ahsan Chen, Weiqi Zhou, Yingying Wu, Xiaofen Ali, Basharat Zhou, Weijun |
description | Brassica napus is a well-known allopolyploid oil crop with high commercial potential. Gibberellin oxidase (GAox) is an essential enzyme that activates gibberellins, which regulate plant growth, and development, and have a significant impact on plant responses to abiotic stress. However, the comprehensive understanding of GAox genes and their evolution in Brassica plants remains elusive. Using advanced bioinformatics tools, this study identified 125 candidate GAox genes from the whole genomes of three key Brassica species. This study also investigated sequence characteristics, conserved motifs, exon/intron structures, cis-acting elements, syntenic analysis, duplication events and expression patterns. Subcellular localization analysis showed that the BnGA2ox14 and BnGA2ox15 proteins are located in the nucleus, whereas BnGA2ox26 is specifically localized to the chloroplast. Yeast one-hybrid and dual-luciferase assays demonstrated that MYELOCYTOMATOSIS 4 (BnMYC4) and ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR (BnAIB) bind to the BnGA2ox15 promoter and activate its transcription. Molecular docking analysis further elucidated their interaction structures and identified potential binding sites. Roots transformations show that overexpression of BnGA2ox15 increased sensitivity to PEG-6000 treatment in rapeseed. In brief, this study reveals that BnGA2ox15 is a downstream target in JA and ABA signaling pathways, functioning as a negative regulator in response to drought stress.
•A total of 125 GAox genes were identified in three Bassica plants.•BnGA2ox15 is downstream target responded JA and ABA treatment and signaling.•BnMYC4 and BnAIB could bind to and activate BnGA2ox15 promoter.•Overexpression of BnGA2ox15 reduced drought tolerance. |
doi_str_mv | 10.1016/j.ijbiomac.2024.136822 |
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•A total of 125 GAox genes were identified in three Bassica plants.•BnGA2ox15 is downstream target responded JA and ABA treatment and signaling.•BnMYC4 and BnAIB could bind to and activate BnGA2ox15 promoter.•Overexpression of BnGA2ox15 reduced drought tolerance.</description><identifier>ISSN: 0141-8130</identifier><identifier>ISSN: 1879-0003</identifier><identifier>EISSN: 1879-0003</identifier><identifier>DOI: 10.1016/j.ijbiomac.2024.136822</identifier><identifier>PMID: 39447790</identifier><language>eng</language><publisher>Netherlands: Elsevier B.V</publisher><subject>BnGA2ox15 ; Brassica napus - enzymology ; Brassica napus - genetics ; Droughts ; Gene Expression Regulation, Plant ; Gibberellin oxidase ; Hormone cross-talk ; Mixed Function Oxygenases - chemistry ; Mixed Function Oxygenases - genetics ; Mixed Function Oxygenases - metabolism ; Molecular Docking Simulation ; Multigene Family ; Phylogeny ; Plant Growth Regulators - metabolism ; Plant Growth Regulators - pharmacology ; Plant Proteins - chemistry ; Plant Proteins - genetics ; Plant Proteins - metabolism ; Promoter Regions, Genetic - genetics ; Rapeseed ; Signal Transduction ; Stress, Physiological - genetics ; Transgenic roots</subject><ispartof>International journal of biological macromolecules, 2024-12, Vol.282 (Pt 2), p.136822, Article 136822</ispartof><rights>2024 Elsevier B.V.</rights><rights>Copyright © 2024 Elsevier B.V. All rights reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c245t-dc2f40bedbcefe81a15b9717d5d94ede94d0de6fd1a0cea79059c7c233de01853</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.ijbiomac.2024.136822$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,780,784,3550,27924,27925,45995</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/39447790$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Qin, Tongjun</creatorcontrib><creatorcontrib>Huang, Qian</creatorcontrib><creatorcontrib>Li, Juanjuan</creatorcontrib><creatorcontrib>Ayyaz, Ahsan</creatorcontrib><creatorcontrib>Farooq, Muhammad Ahsan</creatorcontrib><creatorcontrib>Chen, Weiqi</creatorcontrib><creatorcontrib>Zhou, Yingying</creatorcontrib><creatorcontrib>Wu, Xiaofen</creatorcontrib><creatorcontrib>Ali, Basharat</creatorcontrib><creatorcontrib>Zhou, Weijun</creatorcontrib><title>Comprehensive characterization of gibberellin oxidase gene family in Brassica napus reveals BnGA2ox15 involved in hormone signaling and response to drought stress</title><title>International journal of biological macromolecules</title><addtitle>Int J Biol Macromol</addtitle><description>Brassica napus is a well-known allopolyploid oil crop with high commercial potential. Gibberellin oxidase (GAox) is an essential enzyme that activates gibberellins, which regulate plant growth, and development, and have a significant impact on plant responses to abiotic stress. However, the comprehensive understanding of GAox genes and their evolution in Brassica plants remains elusive. Using advanced bioinformatics tools, this study identified 125 candidate GAox genes from the whole genomes of three key Brassica species. This study also investigated sequence characteristics, conserved motifs, exon/intron structures, cis-acting elements, syntenic analysis, duplication events and expression patterns. Subcellular localization analysis showed that the BnGA2ox14 and BnGA2ox15 proteins are located in the nucleus, whereas BnGA2ox26 is specifically localized to the chloroplast. Yeast one-hybrid and dual-luciferase assays demonstrated that MYELOCYTOMATOSIS 4 (BnMYC4) and ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR (BnAIB) bind to the BnGA2ox15 promoter and activate its transcription. Molecular docking analysis further elucidated their interaction structures and identified potential binding sites. Roots transformations show that overexpression of BnGA2ox15 increased sensitivity to PEG-6000 treatment in rapeseed. In brief, this study reveals that BnGA2ox15 is a downstream target in JA and ABA signaling pathways, functioning as a negative regulator in response to drought stress.
•A total of 125 GAox genes were identified in three Bassica plants.•BnGA2ox15 is downstream target responded JA and ABA treatment and signaling.•BnMYC4 and BnAIB could bind to and activate BnGA2ox15 promoter.•Overexpression of BnGA2ox15 reduced drought tolerance.</description><subject>BnGA2ox15</subject><subject>Brassica napus - enzymology</subject><subject>Brassica napus - genetics</subject><subject>Droughts</subject><subject>Gene Expression Regulation, Plant</subject><subject>Gibberellin oxidase</subject><subject>Hormone cross-talk</subject><subject>Mixed Function Oxygenases - chemistry</subject><subject>Mixed Function Oxygenases - genetics</subject><subject>Mixed Function Oxygenases - metabolism</subject><subject>Molecular Docking Simulation</subject><subject>Multigene Family</subject><subject>Phylogeny</subject><subject>Plant Growth Regulators - metabolism</subject><subject>Plant Growth Regulators - pharmacology</subject><subject>Plant Proteins - chemistry</subject><subject>Plant Proteins - genetics</subject><subject>Plant Proteins - metabolism</subject><subject>Promoter Regions, Genetic - genetics</subject><subject>Rapeseed</subject><subject>Signal Transduction</subject><subject>Stress, Physiological - genetics</subject><subject>Transgenic roots</subject><issn>0141-8130</issn><issn>1879-0003</issn><issn>1879-0003</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkc1O3DAUhS1UVKa0r4C87CaD7fx6Vxi1UAmpG7q2HPsm41FiB98kAh6nT1qPBrrtyvLRd87V0SHkirMtZ7y6PmzdoXVh1GYrmCi2PK8aIc7Ihje1zBhj-QeyYbzgWcNzdkE-IR6SWpW8-UguclkUdS3ZhvzZhXGKsAePbgVq9jpqM0N0r3p2wdPQ0d61LUQYBpe-z85qBNqDB9rp0Q0vNMm3USM6o6nX04I0wgp6QHrr725EeOZlYtYwrGCP8D7EMSQ7ut7rFNpT7W3y4BR8ip4DtTEs_X6mOCcVP5PzLqXBl7f3kvz-8f1xd589_Lr7ubt5yIwoyjmzRnQFa8G2BjpouOZlK2te29LKAizIwjILVWe5ZgZ0al9KUxuR5xYYb8r8knw95U4xPC2AsxodmtRbewgLqpyLZKlkLRNanVATA2KETk3RjTq-KM7UcR91UO_7qOM-6rRPMl693VjaEew_2_sgCfh2AiA1XR1EhcaBN2BdBDMrG9z_bvwFNyeptg</recordid><startdate>202412</startdate><enddate>202412</enddate><creator>Qin, Tongjun</creator><creator>Huang, Qian</creator><creator>Li, Juanjuan</creator><creator>Ayyaz, Ahsan</creator><creator>Farooq, Muhammad Ahsan</creator><creator>Chen, Weiqi</creator><creator>Zhou, Yingying</creator><creator>Wu, Xiaofen</creator><creator>Ali, Basharat</creator><creator>Zhou, Weijun</creator><general>Elsevier B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>202412</creationdate><title>Comprehensive characterization of gibberellin oxidase gene family in Brassica napus reveals BnGA2ox15 involved in hormone signaling and response to drought stress</title><author>Qin, Tongjun ; Huang, Qian ; Li, Juanjuan ; Ayyaz, Ahsan ; Farooq, Muhammad Ahsan ; Chen, Weiqi ; Zhou, Yingying ; Wu, Xiaofen ; Ali, Basharat ; Zhou, Weijun</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c245t-dc2f40bedbcefe81a15b9717d5d94ede94d0de6fd1a0cea79059c7c233de01853</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>BnGA2ox15</topic><topic>Brassica napus - enzymology</topic><topic>Brassica napus - genetics</topic><topic>Droughts</topic><topic>Gene Expression Regulation, Plant</topic><topic>Gibberellin oxidase</topic><topic>Hormone cross-talk</topic><topic>Mixed Function Oxygenases - chemistry</topic><topic>Mixed Function Oxygenases - genetics</topic><topic>Mixed Function Oxygenases - metabolism</topic><topic>Molecular Docking Simulation</topic><topic>Multigene Family</topic><topic>Phylogeny</topic><topic>Plant Growth Regulators - metabolism</topic><topic>Plant Growth Regulators - pharmacology</topic><topic>Plant Proteins - chemistry</topic><topic>Plant Proteins - genetics</topic><topic>Plant Proteins - metabolism</topic><topic>Promoter Regions, Genetic - genetics</topic><topic>Rapeseed</topic><topic>Signal Transduction</topic><topic>Stress, Physiological - genetics</topic><topic>Transgenic roots</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Qin, Tongjun</creatorcontrib><creatorcontrib>Huang, Qian</creatorcontrib><creatorcontrib>Li, Juanjuan</creatorcontrib><creatorcontrib>Ayyaz, Ahsan</creatorcontrib><creatorcontrib>Farooq, Muhammad Ahsan</creatorcontrib><creatorcontrib>Chen, Weiqi</creatorcontrib><creatorcontrib>Zhou, Yingying</creatorcontrib><creatorcontrib>Wu, Xiaofen</creatorcontrib><creatorcontrib>Ali, Basharat</creatorcontrib><creatorcontrib>Zhou, Weijun</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of biological macromolecules</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Qin, Tongjun</au><au>Huang, Qian</au><au>Li, Juanjuan</au><au>Ayyaz, Ahsan</au><au>Farooq, Muhammad Ahsan</au><au>Chen, Weiqi</au><au>Zhou, Yingying</au><au>Wu, Xiaofen</au><au>Ali, Basharat</au><au>Zhou, Weijun</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Comprehensive characterization of gibberellin oxidase gene family in Brassica napus reveals BnGA2ox15 involved in hormone signaling and response to drought stress</atitle><jtitle>International journal of biological macromolecules</jtitle><addtitle>Int J Biol Macromol</addtitle><date>2024-12</date><risdate>2024</risdate><volume>282</volume><issue>Pt 2</issue><spage>136822</spage><pages>136822-</pages><artnum>136822</artnum><issn>0141-8130</issn><issn>1879-0003</issn><eissn>1879-0003</eissn><abstract>Brassica napus is a well-known allopolyploid oil crop with high commercial potential. Gibberellin oxidase (GAox) is an essential enzyme that activates gibberellins, which regulate plant growth, and development, and have a significant impact on plant responses to abiotic stress. However, the comprehensive understanding of GAox genes and their evolution in Brassica plants remains elusive. Using advanced bioinformatics tools, this study identified 125 candidate GAox genes from the whole genomes of three key Brassica species. This study also investigated sequence characteristics, conserved motifs, exon/intron structures, cis-acting elements, syntenic analysis, duplication events and expression patterns. Subcellular localization analysis showed that the BnGA2ox14 and BnGA2ox15 proteins are located in the nucleus, whereas BnGA2ox26 is specifically localized to the chloroplast. Yeast one-hybrid and dual-luciferase assays demonstrated that MYELOCYTOMATOSIS 4 (BnMYC4) and ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR (BnAIB) bind to the BnGA2ox15 promoter and activate its transcription. Molecular docking analysis further elucidated their interaction structures and identified potential binding sites. Roots transformations show that overexpression of BnGA2ox15 increased sensitivity to PEG-6000 treatment in rapeseed. In brief, this study reveals that BnGA2ox15 is a downstream target in JA and ABA signaling pathways, functioning as a negative regulator in response to drought stress.
•A total of 125 GAox genes were identified in three Bassica plants.•BnGA2ox15 is downstream target responded JA and ABA treatment and signaling.•BnMYC4 and BnAIB could bind to and activate BnGA2ox15 promoter.•Overexpression of BnGA2ox15 reduced drought tolerance.</abstract><cop>Netherlands</cop><pub>Elsevier B.V</pub><pmid>39447790</pmid><doi>10.1016/j.ijbiomac.2024.136822</doi></addata></record> |
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subjects | BnGA2ox15 Brassica napus - enzymology Brassica napus - genetics Droughts Gene Expression Regulation, Plant Gibberellin oxidase Hormone cross-talk Mixed Function Oxygenases - chemistry Mixed Function Oxygenases - genetics Mixed Function Oxygenases - metabolism Molecular Docking Simulation Multigene Family Phylogeny Plant Growth Regulators - metabolism Plant Growth Regulators - pharmacology Plant Proteins - chemistry Plant Proteins - genetics Plant Proteins - metabolism Promoter Regions, Genetic - genetics Rapeseed Signal Transduction Stress, Physiological - genetics Transgenic roots |
title | Comprehensive characterization of gibberellin oxidase gene family in Brassica napus reveals BnGA2ox15 involved in hormone signaling and response to drought stress |
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