Evaluation of an Image-based Classification Model to Identify Glioma Subtypes Using Arterial Spin Labeling Perfusion MRI On the Publicly Available UCSF Glioma Dataset
Glioma is a complex cancer comprising various subtypes and mutations, which may have different metabolic characteristics that can potentially be investigated and identified using perfusion imaging. Therefore, the aim of this work was to use radiomics and machine learning analysis of arterial spin la...
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description | Glioma is a complex cancer comprising various subtypes and mutations, which may have different metabolic characteristics that can potentially be investigated and identified using perfusion imaging. Therefore, the aim of this work was to use radiomics and machine learning analysis of arterial spin labeling MRI data to automatically differentiate glioma subtypes and mutations.
A total of 495 Arterial Spin Labeling (ASL) perfusion imaging datasets from the UCSF Glioma database were used in this study. These datasets were segmented to delineate the tumor volume and classified according to tumor grade, pathological diagnosis, and IDH status. Perfusion image data was obtained from a 3T MRI scanner using pseudo-continuous ASL. High level texture features were extracted for each ASL dataset using PyRadiomics after tumor volume segmentation and then analyzed using a machine learning framework consisting of ReliefF feature ranking and logistic model tree classification algorithms.
The results of the evaluation revealed balanced accuracies for the three endpoints ranging from 55.76% (SD = 4.28, 95% CI: 53.90-57.65) for the tumor grade using 25.4 ± 37.21 features, 62.53% (SD = 2.86, 95% CI: 61.27-63.78) for the mutation status with 23.3 ± 29.17 picked features, and 80.97% (SD = 1.83, 95% CI: 80.17-81.78) for the pathological diagnosis which used 47.3 ± 32.72 selected features.
Radiomics and machine learning analysis of ASL perfusion data in glioma patients hold potential for aiding in the diagnosis and treatment of glioma, mainly for discerning glioblastoma from astrocytoma, while performance for tumor grading and mutation status appears limited. |
doi_str_mv | 10.1007/s00062-024-01465-5 |
format | Article |
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A total of 495 Arterial Spin Labeling (ASL) perfusion imaging datasets from the UCSF Glioma database were used in this study. These datasets were segmented to delineate the tumor volume and classified according to tumor grade, pathological diagnosis, and IDH status. Perfusion image data was obtained from a 3T MRI scanner using pseudo-continuous ASL. High level texture features were extracted for each ASL dataset using PyRadiomics after tumor volume segmentation and then analyzed using a machine learning framework consisting of ReliefF feature ranking and logistic model tree classification algorithms.
The results of the evaluation revealed balanced accuracies for the three endpoints ranging from 55.76% (SD = 4.28, 95% CI: 53.90-57.65) for the tumor grade using 25.4 ± 37.21 features, 62.53% (SD = 2.86, 95% CI: 61.27-63.78) for the mutation status with 23.3 ± 29.17 picked features, and 80.97% (SD = 1.83, 95% CI: 80.17-81.78) for the pathological diagnosis which used 47.3 ± 32.72 selected features.
Radiomics and machine learning analysis of ASL perfusion data in glioma patients hold potential for aiding in the diagnosis and treatment of glioma, mainly for discerning glioblastoma from astrocytoma, while performance for tumor grading and mutation status appears limited.</description><identifier>ISSN: 1869-1439</identifier><identifier>ISSN: 1869-1447</identifier><identifier>EISSN: 1869-1447</identifier><identifier>DOI: 10.1007/s00062-024-01465-5</identifier><identifier>PMID: 39419847</identifier><language>eng</language><publisher>Germany</publisher><ispartof>Clinical neuroradiology (Munich), 2024-10</ispartof><rights>2024. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c184t-e87b1622ce35b9d7b00fb6f9bb54da4e2c42ec92a83cc43fbd5a0ae893d6b3d63</cites><orcidid>0000-0002-4408-2429</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,27901,27902</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/39419847$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Amador, K</creatorcontrib><creatorcontrib>Kniep, H</creatorcontrib><creatorcontrib>Fiehler, J</creatorcontrib><creatorcontrib>Forkert, N D</creatorcontrib><creatorcontrib>Lindner, T</creatorcontrib><title>Evaluation of an Image-based Classification Model to Identify Glioma Subtypes Using Arterial Spin Labeling Perfusion MRI On the Publicly Available UCSF Glioma Dataset</title><title>Clinical neuroradiology (Munich)</title><addtitle>Clin Neuroradiol</addtitle><description>Glioma is a complex cancer comprising various subtypes and mutations, which may have different metabolic characteristics that can potentially be investigated and identified using perfusion imaging. Therefore, the aim of this work was to use radiomics and machine learning analysis of arterial spin labeling MRI data to automatically differentiate glioma subtypes and mutations.
A total of 495 Arterial Spin Labeling (ASL) perfusion imaging datasets from the UCSF Glioma database were used in this study. These datasets were segmented to delineate the tumor volume and classified according to tumor grade, pathological diagnosis, and IDH status. Perfusion image data was obtained from a 3T MRI scanner using pseudo-continuous ASL. High level texture features were extracted for each ASL dataset using PyRadiomics after tumor volume segmentation and then analyzed using a machine learning framework consisting of ReliefF feature ranking and logistic model tree classification algorithms.
The results of the evaluation revealed balanced accuracies for the three endpoints ranging from 55.76% (SD = 4.28, 95% CI: 53.90-57.65) for the tumor grade using 25.4 ± 37.21 features, 62.53% (SD = 2.86, 95% CI: 61.27-63.78) for the mutation status with 23.3 ± 29.17 picked features, and 80.97% (SD = 1.83, 95% CI: 80.17-81.78) for the pathological diagnosis which used 47.3 ± 32.72 selected features.
Radiomics and machine learning analysis of ASL perfusion data in glioma patients hold potential for aiding in the diagnosis and treatment of glioma, mainly for discerning glioblastoma from astrocytoma, while performance for tumor grading and mutation status appears limited.</description><issn>1869-1439</issn><issn>1869-1447</issn><issn>1869-1447</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><recordid>eNo9kc9u1DAQhy0EolXpC3BAPnIJ-G8SH1dLW1Za1Iplz9bYGRcjJ1lip9K-EM9J2m17GM1o9M1PI32EfOTsC2es-ZoZY7WomFAV46rWlX5Dznlbm4or1bx9naU5I5c5_1lwJlujdfOenEmjuGlVc07-XT1AmqHEcaBjoDDQTQ_3WDnI2NF1gpxjiP4E_Bg7TLSMdNPhUGI40psUxx7obnbleMBM9zkO93Q1FZwiJLo7xIFuwWF6XN_hFOb8FPRzQ28HWn4jvZtdij4d6eoBYgKXkO7Xu-uX5G9Qlk_KB_IuQMp4-dwvyP766tf6e7W9vdmsV9vK81aVCtvG8VoIj1I70zWOseDqYJzTqgOFwiuB3ghopfdKBtdpYICtkV3tlpIX5PMp9zCNf2fMxfYxe0wJBhznbCXnjTFKaLmg4oT6acx5wmAPU-xhOlrO7KMie1JkF0X2SZHVy9Gn5_zZ9di9nrwIkf8BAoKObQ</recordid><startdate>20241017</startdate><enddate>20241017</enddate><creator>Amador, K</creator><creator>Kniep, H</creator><creator>Fiehler, J</creator><creator>Forkert, N D</creator><creator>Lindner, T</creator><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-4408-2429</orcidid></search><sort><creationdate>20241017</creationdate><title>Evaluation of an Image-based Classification Model to Identify Glioma Subtypes Using Arterial Spin Labeling Perfusion MRI On the Publicly Available UCSF Glioma Dataset</title><author>Amador, K ; Kniep, H ; Fiehler, J ; Forkert, N D ; Lindner, T</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c184t-e87b1622ce35b9d7b00fb6f9bb54da4e2c42ec92a83cc43fbd5a0ae893d6b3d63</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Amador, K</creatorcontrib><creatorcontrib>Kniep, H</creatorcontrib><creatorcontrib>Fiehler, J</creatorcontrib><creatorcontrib>Forkert, N D</creatorcontrib><creatorcontrib>Lindner, T</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Clinical neuroradiology (Munich)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Amador, K</au><au>Kniep, H</au><au>Fiehler, J</au><au>Forkert, N D</au><au>Lindner, T</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Evaluation of an Image-based Classification Model to Identify Glioma Subtypes Using Arterial Spin Labeling Perfusion MRI On the Publicly Available UCSF Glioma Dataset</atitle><jtitle>Clinical neuroradiology (Munich)</jtitle><addtitle>Clin Neuroradiol</addtitle><date>2024-10-17</date><risdate>2024</risdate><issn>1869-1439</issn><issn>1869-1447</issn><eissn>1869-1447</eissn><abstract>Glioma is a complex cancer comprising various subtypes and mutations, which may have different metabolic characteristics that can potentially be investigated and identified using perfusion imaging. Therefore, the aim of this work was to use radiomics and machine learning analysis of arterial spin labeling MRI data to automatically differentiate glioma subtypes and mutations.
A total of 495 Arterial Spin Labeling (ASL) perfusion imaging datasets from the UCSF Glioma database were used in this study. These datasets were segmented to delineate the tumor volume and classified according to tumor grade, pathological diagnosis, and IDH status. Perfusion image data was obtained from a 3T MRI scanner using pseudo-continuous ASL. High level texture features were extracted for each ASL dataset using PyRadiomics after tumor volume segmentation and then analyzed using a machine learning framework consisting of ReliefF feature ranking and logistic model tree classification algorithms.
The results of the evaluation revealed balanced accuracies for the three endpoints ranging from 55.76% (SD = 4.28, 95% CI: 53.90-57.65) for the tumor grade using 25.4 ± 37.21 features, 62.53% (SD = 2.86, 95% CI: 61.27-63.78) for the mutation status with 23.3 ± 29.17 picked features, and 80.97% (SD = 1.83, 95% CI: 80.17-81.78) for the pathological diagnosis which used 47.3 ± 32.72 selected features.
Radiomics and machine learning analysis of ASL perfusion data in glioma patients hold potential for aiding in the diagnosis and treatment of glioma, mainly for discerning glioblastoma from astrocytoma, while performance for tumor grading and mutation status appears limited.</abstract><cop>Germany</cop><pmid>39419847</pmid><doi>10.1007/s00062-024-01465-5</doi><orcidid>https://orcid.org/0000-0002-4408-2429</orcidid></addata></record> |
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title | Evaluation of an Image-based Classification Model to Identify Glioma Subtypes Using Arterial Spin Labeling Perfusion MRI On the Publicly Available UCSF Glioma Dataset |
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