Engineering Tk1656, a highly active l-asparaginase from Thermococcus kodakarensis, for enhanced activity and stability
l-Asparaginases catalyze the hydrolysis of l-asparagine to l-aspartic acid and ammonia. These enzymes have potential applications in therapeutics and food industry. Tk1656, a highly active and thermostable l-asparaginase from Thermococcus kodakarensis, has been proved effective in selective killing...
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Veröffentlicht in: | International journal of biological macromolecules 2024-11, Vol.281 (Pt 3), p.136442, Article 136442 |
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container_title | International journal of biological macromolecules |
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creator | Sania, Ayesha Muhammad, Majida Atta Sajed, Muhammad Ahmad, Nasir Aslam, Mehwish Tang, Xiao-Feng Rashid, Naeem |
description | l-Asparaginases catalyze the hydrolysis of l-asparagine to l-aspartic acid and ammonia. These enzymes have potential applications in therapeutics and food industry. Tk1656, a highly active and thermostable l-asparaginase from Thermococcus kodakarensis, has been proved effective in selective killing of acute lymphocytic leukemia cells and in reducing acrylamide formation in baked and fried foods. However, it displayed 20 % increase in activity at 85 °C. H158S substitution resulted in >5 °C increase in the optimal temperature. Similarly, a mesophilic-like mutation L56D, resulted in >5-fold increase in activity at pH 7.0 and 37 °C compared to that of the wild-type enzyme. The substrate specificity of the mutant variants remained unchanged. These results demonstrate that L56D and K299L variants of Tk1656 are the potent enzymes for therapeutics and acrylamide mitigation applications, respectively. |
doi_str_mv | 10.1016/j.ijbiomac.2024.136442 |
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These enzymes have potential applications in therapeutics and food industry. Tk1656, a highly active and thermostable l-asparaginase from Thermococcus kodakarensis, has been proved effective in selective killing of acute lymphocytic leukemia cells and in reducing acrylamide formation in baked and fried foods. However, it displayed <5 % activity under physiological conditions compared to the optimal activity at 85 °C and pH 9.5. We have attempted engineering of this valuable enzyme to improve the characteristics required for therapeutic and industrial applications. Based on the literature and crystal structure of Tk1656, nine specific mutant variants were designed, produced in Escherichia coli, and the purified mutant enzymes were compared with the wild-type. One of the mutants, K299L, displayed >20 % increase in activity at 85 °C. H158S substitution resulted in >5 °C increase in the optimal temperature. Similarly, a mesophilic-like mutation L56D, resulted in >5-fold increase in activity at pH 7.0 and 37 °C compared to that of the wild-type enzyme. The substrate specificity of the mutant variants remained unchanged. These results demonstrate that L56D and K299L variants of Tk1656 are the potent enzymes for therapeutics and acrylamide mitigation applications, respectively.</description><identifier>ISSN: 0141-8130</identifier><identifier>ISSN: 1879-0003</identifier><identifier>EISSN: 1879-0003</identifier><identifier>DOI: 10.1016/j.ijbiomac.2024.136442</identifier><identifier>PMID: 39389482</identifier><language>eng</language><publisher>Netherlands: Elsevier B.V</publisher><subject>Asparaginase - chemistry ; Asparaginase - genetics ; Asparaginase - metabolism ; Enzyme Stability ; Hydrogen-Ion Concentration ; Kinetics ; l-asparaginase ; Models, Molecular ; Mutation ; Protein engineering ; Protein Engineering - methods ; Structural analysis ; Substrate Specificity ; T. kodakarensis ; Temperature ; Thermococcus - enzymology ; Thermococcus - genetics ; Thermostability</subject><ispartof>International journal of biological macromolecules, 2024-11, Vol.281 (Pt 3), p.136442, Article 136442</ispartof><rights>2024 Elsevier B.V.</rights><rights>Copyright © 2024 Elsevier B.V. All rights reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c245t-93aafc48ab6b342f042e419ab0f4845c9d672d3b8077817e7c3715164fbc01d13</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.ijbiomac.2024.136442$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,780,784,3550,27924,27925,45995</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/39389482$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Sania, Ayesha</creatorcontrib><creatorcontrib>Muhammad, Majida Atta</creatorcontrib><creatorcontrib>Sajed, Muhammad</creatorcontrib><creatorcontrib>Ahmad, Nasir</creatorcontrib><creatorcontrib>Aslam, Mehwish</creatorcontrib><creatorcontrib>Tang, Xiao-Feng</creatorcontrib><creatorcontrib>Rashid, Naeem</creatorcontrib><title>Engineering Tk1656, a highly active l-asparaginase from Thermococcus kodakarensis, for enhanced activity and stability</title><title>International journal of biological macromolecules</title><addtitle>Int J Biol Macromol</addtitle><description>l-Asparaginases catalyze the hydrolysis of l-asparagine to l-aspartic acid and ammonia. These enzymes have potential applications in therapeutics and food industry. Tk1656, a highly active and thermostable l-asparaginase from Thermococcus kodakarensis, has been proved effective in selective killing of acute lymphocytic leukemia cells and in reducing acrylamide formation in baked and fried foods. However, it displayed <5 % activity under physiological conditions compared to the optimal activity at 85 °C and pH 9.5. We have attempted engineering of this valuable enzyme to improve the characteristics required for therapeutic and industrial applications. Based on the literature and crystal structure of Tk1656, nine specific mutant variants were designed, produced in Escherichia coli, and the purified mutant enzymes were compared with the wild-type. One of the mutants, K299L, displayed >20 % increase in activity at 85 °C. H158S substitution resulted in >5 °C increase in the optimal temperature. Similarly, a mesophilic-like mutation L56D, resulted in >5-fold increase in activity at pH 7.0 and 37 °C compared to that of the wild-type enzyme. The substrate specificity of the mutant variants remained unchanged. These results demonstrate that L56D and K299L variants of Tk1656 are the potent enzymes for therapeutics and acrylamide mitigation applications, respectively.</description><subject>Asparaginase - chemistry</subject><subject>Asparaginase - genetics</subject><subject>Asparaginase - metabolism</subject><subject>Enzyme Stability</subject><subject>Hydrogen-Ion Concentration</subject><subject>Kinetics</subject><subject>l-asparaginase</subject><subject>Models, Molecular</subject><subject>Mutation</subject><subject>Protein engineering</subject><subject>Protein Engineering - methods</subject><subject>Structural analysis</subject><subject>Substrate Specificity</subject><subject>T. kodakarensis</subject><subject>Temperature</subject><subject>Thermococcus - enzymology</subject><subject>Thermococcus - genetics</subject><subject>Thermostability</subject><issn>0141-8130</issn><issn>1879-0003</issn><issn>1879-0003</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkMFu2zAMhoVhw5pme4VCxx7qTLRkWb6tKLqtQIFdsrNAy3SixLYyyQmQt68Dp7vuRJD4-BP8GLsDsQIB-ttu5Xe1Dz26VS5ytQKplco_sAWYssqEEPIjWwhQkBmQ4obdprSbproA85ndyEqaSpl8wU7Pw8YPRNEPG77egy70A0e-9Zttd-boRn8i3mWYDhhxIjERb2Po-XpLsQ8uOHdMfB8a3GOkIfn0wNsQOQ1bHBw1c4Qfp6yh4WnE2ndT94V9arFL9PVal-zPj-f106_s9ffPl6fH18zlqhizSiK2ThmsdS1V3gqVk4IKa9EqowpXNbrMG1kbUZYGSiqdLKEArdraCWhALtn9nHuI4e-R0mh7nxx1HQ4UjslKgKIQQhUXVM-oiyGlSK09RN9jPFsQ9uLc7uy7c3txbmfn0-Ld9cax7qn5t_YueQK-zwBNn548RZucp4sdH8mNtgn-fzfeAC8Nll8</recordid><startdate>202411</startdate><enddate>202411</enddate><creator>Sania, Ayesha</creator><creator>Muhammad, Majida Atta</creator><creator>Sajed, Muhammad</creator><creator>Ahmad, Nasir</creator><creator>Aslam, Mehwish</creator><creator>Tang, Xiao-Feng</creator><creator>Rashid, Naeem</creator><general>Elsevier B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>202411</creationdate><title>Engineering Tk1656, a highly active l-asparaginase from Thermococcus kodakarensis, for enhanced activity and stability</title><author>Sania, Ayesha ; Muhammad, Majida Atta ; Sajed, Muhammad ; Ahmad, Nasir ; Aslam, Mehwish ; Tang, Xiao-Feng ; Rashid, Naeem</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c245t-93aafc48ab6b342f042e419ab0f4845c9d672d3b8077817e7c3715164fbc01d13</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Asparaginase - chemistry</topic><topic>Asparaginase - genetics</topic><topic>Asparaginase - metabolism</topic><topic>Enzyme Stability</topic><topic>Hydrogen-Ion Concentration</topic><topic>Kinetics</topic><topic>l-asparaginase</topic><topic>Models, Molecular</topic><topic>Mutation</topic><topic>Protein engineering</topic><topic>Protein Engineering - methods</topic><topic>Structural analysis</topic><topic>Substrate Specificity</topic><topic>T. kodakarensis</topic><topic>Temperature</topic><topic>Thermococcus - enzymology</topic><topic>Thermococcus - genetics</topic><topic>Thermostability</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Sania, Ayesha</creatorcontrib><creatorcontrib>Muhammad, Majida Atta</creatorcontrib><creatorcontrib>Sajed, Muhammad</creatorcontrib><creatorcontrib>Ahmad, Nasir</creatorcontrib><creatorcontrib>Aslam, Mehwish</creatorcontrib><creatorcontrib>Tang, Xiao-Feng</creatorcontrib><creatorcontrib>Rashid, Naeem</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of biological macromolecules</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Sania, Ayesha</au><au>Muhammad, Majida Atta</au><au>Sajed, Muhammad</au><au>Ahmad, Nasir</au><au>Aslam, Mehwish</au><au>Tang, Xiao-Feng</au><au>Rashid, Naeem</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Engineering Tk1656, a highly active l-asparaginase from Thermococcus kodakarensis, for enhanced activity and stability</atitle><jtitle>International journal of biological macromolecules</jtitle><addtitle>Int J Biol Macromol</addtitle><date>2024-11</date><risdate>2024</risdate><volume>281</volume><issue>Pt 3</issue><spage>136442</spage><pages>136442-</pages><artnum>136442</artnum><issn>0141-8130</issn><issn>1879-0003</issn><eissn>1879-0003</eissn><abstract>l-Asparaginases catalyze the hydrolysis of l-asparagine to l-aspartic acid and ammonia. These enzymes have potential applications in therapeutics and food industry. Tk1656, a highly active and thermostable l-asparaginase from Thermococcus kodakarensis, has been proved effective in selective killing of acute lymphocytic leukemia cells and in reducing acrylamide formation in baked and fried foods. However, it displayed <5 % activity under physiological conditions compared to the optimal activity at 85 °C and pH 9.5. We have attempted engineering of this valuable enzyme to improve the characteristics required for therapeutic and industrial applications. Based on the literature and crystal structure of Tk1656, nine specific mutant variants were designed, produced in Escherichia coli, and the purified mutant enzymes were compared with the wild-type. One of the mutants, K299L, displayed >20 % increase in activity at 85 °C. H158S substitution resulted in >5 °C increase in the optimal temperature. Similarly, a mesophilic-like mutation L56D, resulted in >5-fold increase in activity at pH 7.0 and 37 °C compared to that of the wild-type enzyme. The substrate specificity of the mutant variants remained unchanged. These results demonstrate that L56D and K299L variants of Tk1656 are the potent enzymes for therapeutics and acrylamide mitigation applications, respectively.</abstract><cop>Netherlands</cop><pub>Elsevier B.V</pub><pmid>39389482</pmid><doi>10.1016/j.ijbiomac.2024.136442</doi></addata></record> |
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subjects | Asparaginase - chemistry Asparaginase - genetics Asparaginase - metabolism Enzyme Stability Hydrogen-Ion Concentration Kinetics l-asparaginase Models, Molecular Mutation Protein engineering Protein Engineering - methods Structural analysis Substrate Specificity T. kodakarensis Temperature Thermococcus - enzymology Thermococcus - genetics Thermostability |
title | Engineering Tk1656, a highly active l-asparaginase from Thermococcus kodakarensis, for enhanced activity and stability |
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