Rhodococcus navarretei sp. nov. and Pseudarthrobacter quantipunctorum sp. nov., two novel species with the ability to biosynthesize fluorescent nanoparticles, isolated from soil samples at Union Glacier, Antarctica
Two Gram-stain-positive bacterial strains, EXRC-4A-4 and RC-2-3 , were isolated from soil samples collected at Union Glacier, Antarctica. Based on 16S rRNA gene sequence similarity, strain EXRC-4A-4 was identified as belonging to the genus , and strain RC-2-3 to the genus . Further genomic analyses,...
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| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2024-10, Vol.74 (10) |
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| creator | Carrasco, Valentina Vargas-Reyes, Matías Lagos-Moraga, Sebastián Dietz-Vargas, Claudio Allendes-Ormazábal, Daniela Meza-Inzunza, Juan Rojas-Morales, Fernanda Durán-Villegas, Sebastián Valenzuela-Ibaceta, Felipe Cabrera, Ma Ángeles Pérez-Donoso, José M |
| description | Two Gram-stain-positive bacterial strains, EXRC-4A-4
and RC-2-3
, were isolated from soil samples collected at Union Glacier, Antarctica. Based on 16S rRNA gene sequence similarity, strain EXRC-4A-4
was identified as belonging to the genus
, and strain RC-2-3
to the genus
. Further genomic analyses, including average nucleotide identity and digital DNA-DNA hybridization, suggested that these strains represent new species. Strain EXRC-4A-4
exhibited growth at temperatures ranging from 4 to 28 °C (optimum between 20 and 28 °C), at pH 5.0-9.0 (optimum, pH 6.0), and in the presence of 0-5.0% NaCl (optimum between 0 and 1% NaCl). Strain RC-2-3
grew at 4-28 °C (optimum growth at 28 °C), pH 6.0-10 (optimum, pH 7.0) and in the presence of 0-5.0% NaCl (optimum, 1% NaCl). The fatty acid profile of EXRC-4A-4
was dominated by C
, while that of RC-2-3
was dominated by anteiso-C
. The draft genome sequences revealed a DNA G+C content of 64.6 mol% for EXRC-4A-4
and 65.8 mol% for RC-2-3
. Based on this polyphasic study, EXRC-4A-4
and RC-2-3
represent two novel species within the genera
and
, respectively. We propose the names
sp. nov. and
sp. nov. The type strains are
EXRC-4A-4
and
RC-2-3
. These strains have been deposited deposited in the CChRGM and BCCM/LMG culture collections with entry numbers RGM 3539/LMG 33621 and RGM 3538/LMG 33620, respectively. |
| doi_str_mv | 10.1099/ijsem.0.006536 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_3112856962</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>3112856962</sourcerecordid><originalsourceid>FETCH-LOGICAL-c180t-e6352cc9527a718f82762e2d4690c6d122f48dbf9bbeff389b8cb7a330f3fd953</originalsourceid><addsrcrecordid>eNo9UctuFDEQHCEiEgJXjqiPHHYnfux4Z45RRAJSJBAi55Efba0jjz2xPYmWD8334LBhT92qrq7qVjXNJ0paSobhwt1nnFrSEiI6Lt40Z3QjxLojfPP22DNx2rzP-Z6QChDyrjnlAxe0o_Ssef61iybqqPWSIchHmRIWdJDnFkJ8bEEGAz8zLkamsktRSV0wwcMiQ3HzEnSJaZmO9BWUp_jSoa8YaocZnlzZQdkhSOW8K3soEZSLeR8qmN0fBOuXmDBrDKXeEOJcvZz2mFfgcvSyoAGbYrWJrurKaa4zkAXugosBbrysRmkFl6HIpOuq_NCcWOkzfnyt583d9dffV9_Wtz9uvl9d3q417UlZo-Ad03ro2FZuaW97thUMmdmIgWhhKGN20xtlB6XQWt4PqtdqKzknllszdPy8-XLQnVN8WDCXcXL1D-9lwLjkkVPK-k4MglVqe6DqFHNOaMc5uUmm_UjJ-JLl-C_LkYyHLOvC51ftRU1ojvT_4fG_AhWhww</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>3112856962</pqid></control><display><type>article</type><title>Rhodococcus navarretei sp. nov. and Pseudarthrobacter quantipunctorum sp. nov., two novel species with the ability to biosynthesize fluorescent nanoparticles, isolated from soil samples at Union Glacier, Antarctica</title><source>MEDLINE</source><source>Microbiology Society</source><creator>Carrasco, Valentina ; Vargas-Reyes, Matías ; Lagos-Moraga, Sebastián ; Dietz-Vargas, Claudio ; Allendes-Ormazábal, Daniela ; Meza-Inzunza, Juan ; Rojas-Morales, Fernanda ; Durán-Villegas, Sebastián ; Valenzuela-Ibaceta, Felipe ; Cabrera, Ma Ángeles ; Pérez-Donoso, José M</creator><creatorcontrib>Carrasco, Valentina ; Vargas-Reyes, Matías ; Lagos-Moraga, Sebastián ; Dietz-Vargas, Claudio ; Allendes-Ormazábal, Daniela ; Meza-Inzunza, Juan ; Rojas-Morales, Fernanda ; Durán-Villegas, Sebastián ; Valenzuela-Ibaceta, Felipe ; Cabrera, Ma Ángeles ; Pérez-Donoso, José M</creatorcontrib><description>Two Gram-stain-positive bacterial strains, EXRC-4A-4
and RC-2-3
, were isolated from soil samples collected at Union Glacier, Antarctica. Based on 16S rRNA gene sequence similarity, strain EXRC-4A-4
was identified as belonging to the genus
, and strain RC-2-3
to the genus
. Further genomic analyses, including average nucleotide identity and digital DNA-DNA hybridization, suggested that these strains represent new species. Strain EXRC-4A-4
exhibited growth at temperatures ranging from 4 to 28 °C (optimum between 20 and 28 °C), at pH 5.0-9.0 (optimum, pH 6.0), and in the presence of 0-5.0% NaCl (optimum between 0 and 1% NaCl). Strain RC-2-3
grew at 4-28 °C (optimum growth at 28 °C), pH 6.0-10 (optimum, pH 7.0) and in the presence of 0-5.0% NaCl (optimum, 1% NaCl). The fatty acid profile of EXRC-4A-4
was dominated by C
, while that of RC-2-3
was dominated by anteiso-C
. The draft genome sequences revealed a DNA G+C content of 64.6 mol% for EXRC-4A-4
and 65.8 mol% for RC-2-3
. Based on this polyphasic study, EXRC-4A-4
and RC-2-3
represent two novel species within the genera
and
, respectively. We propose the names
sp. nov. and
sp. nov. The type strains are
EXRC-4A-4
and
RC-2-3
. These strains have been deposited deposited in the CChRGM and BCCM/LMG culture collections with entry numbers RGM 3539/LMG 33621 and RGM 3538/LMG 33620, respectively.</description><identifier>ISSN: 1466-5026</identifier><identifier>ISSN: 1466-5034</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijsem.0.006536</identifier><identifier>PMID: 39361511</identifier><language>eng</language><publisher>England</publisher><subject>Actinomycetales - classification ; Actinomycetales - genetics ; Actinomycetales - isolation & purification ; Actinomycetales - metabolism ; Antarctic Regions ; Bacterial Typing Techniques ; Base Composition ; DNA, Bacterial - genetics ; Fatty Acids ; Ice Cover - microbiology ; Nucleic Acid Hybridization ; Phylogeny ; Rhodococcus - classification ; Rhodococcus - genetics ; Rhodococcus - isolation & purification ; Rhodococcus - metabolism ; RNA, Ribosomal, 16S - genetics ; Sequence Analysis, DNA ; Soil Microbiology</subject><ispartof>International journal of systematic and evolutionary microbiology, 2024-10, Vol.74 (10)</ispartof><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c180t-e6352cc9527a718f82762e2d4690c6d122f48dbf9bbeff389b8cb7a330f3fd953</cites><orcidid>0000-0002-9506-1716</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,3746,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/39361511$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Carrasco, Valentina</creatorcontrib><creatorcontrib>Vargas-Reyes, Matías</creatorcontrib><creatorcontrib>Lagos-Moraga, Sebastián</creatorcontrib><creatorcontrib>Dietz-Vargas, Claudio</creatorcontrib><creatorcontrib>Allendes-Ormazábal, Daniela</creatorcontrib><creatorcontrib>Meza-Inzunza, Juan</creatorcontrib><creatorcontrib>Rojas-Morales, Fernanda</creatorcontrib><creatorcontrib>Durán-Villegas, Sebastián</creatorcontrib><creatorcontrib>Valenzuela-Ibaceta, Felipe</creatorcontrib><creatorcontrib>Cabrera, Ma Ángeles</creatorcontrib><creatorcontrib>Pérez-Donoso, José M</creatorcontrib><title>Rhodococcus navarretei sp. nov. and Pseudarthrobacter quantipunctorum sp. nov., two novel species with the ability to biosynthesize fluorescent nanoparticles, isolated from soil samples at Union Glacier, Antarctica</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>Two Gram-stain-positive bacterial strains, EXRC-4A-4
and RC-2-3
, were isolated from soil samples collected at Union Glacier, Antarctica. Based on 16S rRNA gene sequence similarity, strain EXRC-4A-4
was identified as belonging to the genus
, and strain RC-2-3
to the genus
. Further genomic analyses, including average nucleotide identity and digital DNA-DNA hybridization, suggested that these strains represent new species. Strain EXRC-4A-4
exhibited growth at temperatures ranging from 4 to 28 °C (optimum between 20 and 28 °C), at pH 5.0-9.0 (optimum, pH 6.0), and in the presence of 0-5.0% NaCl (optimum between 0 and 1% NaCl). Strain RC-2-3
grew at 4-28 °C (optimum growth at 28 °C), pH 6.0-10 (optimum, pH 7.0) and in the presence of 0-5.0% NaCl (optimum, 1% NaCl). The fatty acid profile of EXRC-4A-4
was dominated by C
, while that of RC-2-3
was dominated by anteiso-C
. The draft genome sequences revealed a DNA G+C content of 64.6 mol% for EXRC-4A-4
and 65.8 mol% for RC-2-3
. Based on this polyphasic study, EXRC-4A-4
and RC-2-3
represent two novel species within the genera
and
, respectively. We propose the names
sp. nov. and
sp. nov. The type strains are
EXRC-4A-4
and
RC-2-3
. These strains have been deposited deposited in the CChRGM and BCCM/LMG culture collections with entry numbers RGM 3539/LMG 33621 and RGM 3538/LMG 33620, respectively.</description><subject>Actinomycetales - classification</subject><subject>Actinomycetales - genetics</subject><subject>Actinomycetales - isolation & purification</subject><subject>Actinomycetales - metabolism</subject><subject>Antarctic Regions</subject><subject>Bacterial Typing Techniques</subject><subject>Base Composition</subject><subject>DNA, Bacterial - genetics</subject><subject>Fatty Acids</subject><subject>Ice Cover - microbiology</subject><subject>Nucleic Acid Hybridization</subject><subject>Phylogeny</subject><subject>Rhodococcus - classification</subject><subject>Rhodococcus - genetics</subject><subject>Rhodococcus - isolation & purification</subject><subject>Rhodococcus - metabolism</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Sequence Analysis, DNA</subject><subject>Soil Microbiology</subject><issn>1466-5026</issn><issn>1466-5034</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNo9UctuFDEQHCEiEgJXjqiPHHYnfux4Z45RRAJSJBAi55Efba0jjz2xPYmWD8334LBhT92qrq7qVjXNJ0paSobhwt1nnFrSEiI6Lt40Z3QjxLojfPP22DNx2rzP-Z6QChDyrjnlAxe0o_Ssef61iybqqPWSIchHmRIWdJDnFkJ8bEEGAz8zLkamsktRSV0wwcMiQ3HzEnSJaZmO9BWUp_jSoa8YaocZnlzZQdkhSOW8K3soEZSLeR8qmN0fBOuXmDBrDKXeEOJcvZz2mFfgcvSyoAGbYrWJrurKaa4zkAXugosBbrysRmkFl6HIpOuq_NCcWOkzfnyt583d9dffV9_Wtz9uvl9d3q417UlZo-Ad03ro2FZuaW97thUMmdmIgWhhKGN20xtlB6XQWt4PqtdqKzknllszdPy8-XLQnVN8WDCXcXL1D-9lwLjkkVPK-k4MglVqe6DqFHNOaMc5uUmm_UjJ-JLl-C_LkYyHLOvC51ftRU1ojvT_4fG_AhWhww</recordid><startdate>202410</startdate><enddate>202410</enddate><creator>Carrasco, Valentina</creator><creator>Vargas-Reyes, Matías</creator><creator>Lagos-Moraga, Sebastián</creator><creator>Dietz-Vargas, Claudio</creator><creator>Allendes-Ormazábal, Daniela</creator><creator>Meza-Inzunza, Juan</creator><creator>Rojas-Morales, Fernanda</creator><creator>Durán-Villegas, Sebastián</creator><creator>Valenzuela-Ibaceta, Felipe</creator><creator>Cabrera, Ma Ángeles</creator><creator>Pérez-Donoso, José M</creator><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-9506-1716</orcidid></search><sort><creationdate>202410</creationdate><title>Rhodococcus navarretei sp. nov. and Pseudarthrobacter quantipunctorum sp. nov., two novel species with the ability to biosynthesize fluorescent nanoparticles, isolated from soil samples at Union Glacier, Antarctica</title><author>Carrasco, Valentina ; Vargas-Reyes, Matías ; Lagos-Moraga, Sebastián ; Dietz-Vargas, Claudio ; Allendes-Ormazábal, Daniela ; Meza-Inzunza, Juan ; Rojas-Morales, Fernanda ; Durán-Villegas, Sebastián ; Valenzuela-Ibaceta, Felipe ; Cabrera, Ma Ángeles ; Pérez-Donoso, José M</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c180t-e6352cc9527a718f82762e2d4690c6d122f48dbf9bbeff389b8cb7a330f3fd953</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Actinomycetales - classification</topic><topic>Actinomycetales - genetics</topic><topic>Actinomycetales - isolation & purification</topic><topic>Actinomycetales - metabolism</topic><topic>Antarctic Regions</topic><topic>Bacterial Typing Techniques</topic><topic>Base Composition</topic><topic>DNA, Bacterial - genetics</topic><topic>Fatty Acids</topic><topic>Ice Cover - microbiology</topic><topic>Nucleic Acid Hybridization</topic><topic>Phylogeny</topic><topic>Rhodococcus - classification</topic><topic>Rhodococcus - genetics</topic><topic>Rhodococcus - isolation & purification</topic><topic>Rhodococcus - metabolism</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Sequence Analysis, DNA</topic><topic>Soil Microbiology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Carrasco, Valentina</creatorcontrib><creatorcontrib>Vargas-Reyes, Matías</creatorcontrib><creatorcontrib>Lagos-Moraga, Sebastián</creatorcontrib><creatorcontrib>Dietz-Vargas, Claudio</creatorcontrib><creatorcontrib>Allendes-Ormazábal, Daniela</creatorcontrib><creatorcontrib>Meza-Inzunza, Juan</creatorcontrib><creatorcontrib>Rojas-Morales, Fernanda</creatorcontrib><creatorcontrib>Durán-Villegas, Sebastián</creatorcontrib><creatorcontrib>Valenzuela-Ibaceta, Felipe</creatorcontrib><creatorcontrib>Cabrera, Ma Ángeles</creatorcontrib><creatorcontrib>Pérez-Donoso, José M</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Carrasco, Valentina</au><au>Vargas-Reyes, Matías</au><au>Lagos-Moraga, Sebastián</au><au>Dietz-Vargas, Claudio</au><au>Allendes-Ormazábal, Daniela</au><au>Meza-Inzunza, Juan</au><au>Rojas-Morales, Fernanda</au><au>Durán-Villegas, Sebastián</au><au>Valenzuela-Ibaceta, Felipe</au><au>Cabrera, Ma Ángeles</au><au>Pérez-Donoso, José M</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Rhodococcus navarretei sp. nov. and Pseudarthrobacter quantipunctorum sp. nov., two novel species with the ability to biosynthesize fluorescent nanoparticles, isolated from soil samples at Union Glacier, Antarctica</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2024-10</date><risdate>2024</risdate><volume>74</volume><issue>10</issue><issn>1466-5026</issn><issn>1466-5034</issn><eissn>1466-5034</eissn><abstract>Two Gram-stain-positive bacterial strains, EXRC-4A-4
and RC-2-3
, were isolated from soil samples collected at Union Glacier, Antarctica. Based on 16S rRNA gene sequence similarity, strain EXRC-4A-4
was identified as belonging to the genus
, and strain RC-2-3
to the genus
. Further genomic analyses, including average nucleotide identity and digital DNA-DNA hybridization, suggested that these strains represent new species. Strain EXRC-4A-4
exhibited growth at temperatures ranging from 4 to 28 °C (optimum between 20 and 28 °C), at pH 5.0-9.0 (optimum, pH 6.0), and in the presence of 0-5.0% NaCl (optimum between 0 and 1% NaCl). Strain RC-2-3
grew at 4-28 °C (optimum growth at 28 °C), pH 6.0-10 (optimum, pH 7.0) and in the presence of 0-5.0% NaCl (optimum, 1% NaCl). The fatty acid profile of EXRC-4A-4
was dominated by C
, while that of RC-2-3
was dominated by anteiso-C
. The draft genome sequences revealed a DNA G+C content of 64.6 mol% for EXRC-4A-4
and 65.8 mol% for RC-2-3
. Based on this polyphasic study, EXRC-4A-4
and RC-2-3
represent two novel species within the genera
and
, respectively. We propose the names
sp. nov. and
sp. nov. The type strains are
EXRC-4A-4
and
RC-2-3
. These strains have been deposited deposited in the CChRGM and BCCM/LMG culture collections with entry numbers RGM 3539/LMG 33621 and RGM 3538/LMG 33620, respectively.</abstract><cop>England</cop><pmid>39361511</pmid><doi>10.1099/ijsem.0.006536</doi><orcidid>https://orcid.org/0000-0002-9506-1716</orcidid></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 1466-5026 |
| ispartof | International journal of systematic and evolutionary microbiology, 2024-10, Vol.74 (10) |
| issn | 1466-5026 1466-5034 1466-5034 |
| language | eng |
| recordid | cdi_proquest_miscellaneous_3112856962 |
| source | MEDLINE; Microbiology Society |
| subjects | Actinomycetales - classification Actinomycetales - genetics Actinomycetales - isolation & purification Actinomycetales - metabolism Antarctic Regions Bacterial Typing Techniques Base Composition DNA, Bacterial - genetics Fatty Acids Ice Cover - microbiology Nucleic Acid Hybridization Phylogeny Rhodococcus - classification Rhodococcus - genetics Rhodococcus - isolation & purification Rhodococcus - metabolism RNA, Ribosomal, 16S - genetics Sequence Analysis, DNA Soil Microbiology |
| title | Rhodococcus navarretei sp. nov. and Pseudarthrobacter quantipunctorum sp. nov., two novel species with the ability to biosynthesize fluorescent nanoparticles, isolated from soil samples at Union Glacier, Antarctica |
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