Epigenetic tuning of PD-1 expression improves exhausted T cell function and viral control
PD-1 is a key negative regulator of CD8 + T cell activation and is highly expressed by exhausted T cells in cancer and chronic viral infection. Although PD-1 blockade can improve viral and tumor control, physiological PD-1 expression prevents immunopathology and improves memory formation. The mechan...
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creator | Weiss, Sarah A. Huang, Amy Y. Fung, Megan E. Martinez, Daniela Chen, Alex C. Y. LaSalle, Thomas J. Miller, Brian C. Scharer, Christopher D. Hegde, Mudra Nguyen, Thao H. Rowe, Jared H. Osborn, Jossef F. Patterson, Dillon G. Sifnugel, Natalia Mei-An Nolan, C. Davidson, Richard A. Schwartz, Marc A. Bally, Alexander P. R. Neeld, Dennis K. LaFleur, Martin W. Boss, Jeremy M. Doench, John G. Nicholas Haining, W. Sharpe, Arlene H. Sen, Debattama R. |
description | PD-1 is a key negative regulator of CD8
+
T cell activation and is highly expressed by exhausted T cells in cancer and chronic viral infection. Although PD-1 blockade can improve viral and tumor control, physiological PD-1 expression prevents immunopathology and improves memory formation. The mechanisms driving high PD-1 expression in exhaustion are not well understood and could be critical to disentangling its beneficial and detrimental effects. Here, we functionally interrogated the epigenetic regulation of PD-1 using a mouse model with deletion of an exhaustion-specific PD-1 enhancer. Enhancer deletion exclusively alters PD-1 expression in CD8
+
T cells in chronic infection, creating a ‘sweet spot’ of intermediate expression where T cell function is optimized compared to wild-type and
Pdcd1
-knockout cells. This permits improved control of chronic infection without additional immunopathology. Together, these results demonstrate that tuning PD-1 via epigenetic editing can reduce CD8
+
T cell dysfunction while avoiding excess immunopathology.
PD-1 is a critical modulator of CD8
+
T cell activation and exhaustion. Sen and colleagues show that a cell-state-specific enhancer tunes PD-1 expression exclusively in exhaustion and that deletion of this enhancer improves CD8
+
T cell function. |
doi_str_mv | 10.1038/s41590-024-01961-3 |
format | Article |
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+
T cell activation and is highly expressed by exhausted T cells in cancer and chronic viral infection. Although PD-1 blockade can improve viral and tumor control, physiological PD-1 expression prevents immunopathology and improves memory formation. The mechanisms driving high PD-1 expression in exhaustion are not well understood and could be critical to disentangling its beneficial and detrimental effects. Here, we functionally interrogated the epigenetic regulation of PD-1 using a mouse model with deletion of an exhaustion-specific PD-1 enhancer. Enhancer deletion exclusively alters PD-1 expression in CD8
+
T cells in chronic infection, creating a ‘sweet spot’ of intermediate expression where T cell function is optimized compared to wild-type and
Pdcd1
-knockout cells. This permits improved control of chronic infection without additional immunopathology. Together, these results demonstrate that tuning PD-1 via epigenetic editing can reduce CD8
+
T cell dysfunction while avoiding excess immunopathology.
PD-1 is a critical modulator of CD8
+
T cell activation and exhaustion. Sen and colleagues show that a cell-state-specific enhancer tunes PD-1 expression exclusively in exhaustion and that deletion of this enhancer improves CD8
+
T cell function.</description><identifier>ISSN: 1529-2908</identifier><identifier>ISSN: 1529-2916</identifier><identifier>EISSN: 1529-2916</identifier><identifier>DOI: 10.1038/s41590-024-01961-3</identifier><identifier>PMID: 39289557</identifier><language>eng</language><publisher>New York: Nature Publishing Group US</publisher><subject>631/250/1619/554/1834 ; 631/250/2502/2170 ; 631/250/255/2514 ; 631/337/100/102 ; Animals ; Biomedical and Life Sciences ; Biomedicine ; CD8 antigen ; CD8-Positive T-Lymphocytes - immunology ; Cell activation ; Chronic infection ; Clonal deletion ; Enhancer Elements, Genetic - genetics ; Epigenesis, Genetic ; Epigenetics ; Immunological memory ; Immunology ; Infections ; Infectious Diseases ; Lymphocyte Activation - immunology ; Lymphocytes ; Lymphocytes T ; Lymphocytic Choriomeningitis - immunology ; Lymphocytic Choriomeningitis - virology ; Memory cells ; Mice ; Mice, Inbred C57BL ; Mice, Knockout ; PD-1 protein ; Programmed Cell Death 1 Receptor - genetics ; Programmed Cell Death 1 Receptor - metabolism ; Viral infections</subject><ispartof>Nature immunology, 2024-10, Vol.25 (10), p.1871-1883</ispartof><rights>The Author(s), under exclusive licence to Springer Nature America, Inc. 2024. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.</rights><rights>2024. The Author(s), under exclusive licence to Springer Nature America, Inc.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c256t-da6e518d41acccc9b79598501d347a5db7a4acf807e1b79111d02a434db0f0a23</cites><orcidid>0000-0002-6646-6503 ; 0000-0001-7716-8504 ; 0000-0002-3707-9889 ; 0000-0002-9736-2109 ; 0000-0002-4155-0346 ; 0000-0002-8109-7339 ; 0000-0002-8358-5408 ; 0000-0001-7871-3762 ; 0000-0002-2432-1840 ; 0000-0002-5017-774X ; 0000-0002-0947-8284 ; 0000-0003-3869-0150 ; 0000-0002-2767-0528</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1038/s41590-024-01961-3$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1038/s41590-024-01961-3$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/39289557$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Weiss, Sarah A.</creatorcontrib><creatorcontrib>Huang, Amy Y.</creatorcontrib><creatorcontrib>Fung, Megan E.</creatorcontrib><creatorcontrib>Martinez, Daniela</creatorcontrib><creatorcontrib>Chen, Alex C. Y.</creatorcontrib><creatorcontrib>LaSalle, Thomas J.</creatorcontrib><creatorcontrib>Miller, Brian C.</creatorcontrib><creatorcontrib>Scharer, Christopher D.</creatorcontrib><creatorcontrib>Hegde, Mudra</creatorcontrib><creatorcontrib>Nguyen, Thao H.</creatorcontrib><creatorcontrib>Rowe, Jared H.</creatorcontrib><creatorcontrib>Osborn, Jossef F.</creatorcontrib><creatorcontrib>Patterson, Dillon G.</creatorcontrib><creatorcontrib>Sifnugel, Natalia</creatorcontrib><creatorcontrib>Mei-An Nolan, C.</creatorcontrib><creatorcontrib>Davidson, Richard A.</creatorcontrib><creatorcontrib>Schwartz, Marc A.</creatorcontrib><creatorcontrib>Bally, Alexander P. R.</creatorcontrib><creatorcontrib>Neeld, Dennis K.</creatorcontrib><creatorcontrib>LaFleur, Martin W.</creatorcontrib><creatorcontrib>Boss, Jeremy M.</creatorcontrib><creatorcontrib>Doench, John G.</creatorcontrib><creatorcontrib>Nicholas Haining, W.</creatorcontrib><creatorcontrib>Sharpe, Arlene H.</creatorcontrib><creatorcontrib>Sen, Debattama R.</creatorcontrib><title>Epigenetic tuning of PD-1 expression improves exhausted T cell function and viral control</title><title>Nature immunology</title><addtitle>Nat Immunol</addtitle><addtitle>Nat Immunol</addtitle><description>PD-1 is a key negative regulator of CD8
+
T cell activation and is highly expressed by exhausted T cells in cancer and chronic viral infection. Although PD-1 blockade can improve viral and tumor control, physiological PD-1 expression prevents immunopathology and improves memory formation. The mechanisms driving high PD-1 expression in exhaustion are not well understood and could be critical to disentangling its beneficial and detrimental effects. Here, we functionally interrogated the epigenetic regulation of PD-1 using a mouse model with deletion of an exhaustion-specific PD-1 enhancer. Enhancer deletion exclusively alters PD-1 expression in CD8
+
T cells in chronic infection, creating a ‘sweet spot’ of intermediate expression where T cell function is optimized compared to wild-type and
Pdcd1
-knockout cells. This permits improved control of chronic infection without additional immunopathology. Together, these results demonstrate that tuning PD-1 via epigenetic editing can reduce CD8
+
T cell dysfunction while avoiding excess immunopathology.
PD-1 is a critical modulator of CD8
+
T cell activation and exhaustion. Sen and colleagues show that a cell-state-specific enhancer tunes PD-1 expression exclusively in exhaustion and that deletion of this enhancer improves CD8
+
T cell function.</description><subject>631/250/1619/554/1834</subject><subject>631/250/2502/2170</subject><subject>631/250/255/2514</subject><subject>631/337/100/102</subject><subject>Animals</subject><subject>Biomedical and Life Sciences</subject><subject>Biomedicine</subject><subject>CD8 antigen</subject><subject>CD8-Positive T-Lymphocytes - immunology</subject><subject>Cell activation</subject><subject>Chronic infection</subject><subject>Clonal deletion</subject><subject>Enhancer Elements, Genetic - genetics</subject><subject>Epigenesis, Genetic</subject><subject>Epigenetics</subject><subject>Immunological memory</subject><subject>Immunology</subject><subject>Infections</subject><subject>Infectious Diseases</subject><subject>Lymphocyte Activation - immunology</subject><subject>Lymphocytes</subject><subject>Lymphocytes T</subject><subject>Lymphocytic Choriomeningitis - immunology</subject><subject>Lymphocytic Choriomeningitis - virology</subject><subject>Memory cells</subject><subject>Mice</subject><subject>Mice, Inbred C57BL</subject><subject>Mice, Knockout</subject><subject>PD-1 protein</subject><subject>Programmed Cell Death 1 Receptor - genetics</subject><subject>Programmed Cell Death 1 Receptor - metabolism</subject><subject>Viral infections</subject><issn>1529-2908</issn><issn>1529-2916</issn><issn>1529-2916</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kD1PwzAQhi0EoqXwBxiQJRaWgM8fSTyiUj6kSjCUgclyY6ekSp1iJxX8exxaQGLgFp98z7336kXoFMglEJZfBQ5CkoRQnhCQKSRsDw1BUJlQCen-T0_yAToKYUkI8Czlh2jAJM2lENkQvUzW1cI621YFbjtXuQVuSvx0kwC272tvQ6gah6vV2jcbG-Lfq-5Caw2e4cLWNS47V7Q9op3Bm8rrGheNa31TH6ODUtfBnuzeEXq-nczG98n08e5hfD1NCirSNjE6tQJyw0EXseQ8k0LmgoBhPNPCzDPNdVHmJLMQZwBgCNWccTMnJdGUjdDFVjdafOtsaNWqCr037WzTBcWApFzIjIqInv9Bl03nXXQXKSBCpIL3FN1ShW9C8LZUa1-ttP9QQFQfvNoGr2Lw6it4xeLS2U66m6-s-Vn5TjoCbAuEOHIL639v_yP7CQdujb8</recordid><startdate>20241001</startdate><enddate>20241001</enddate><creator>Weiss, Sarah A.</creator><creator>Huang, Amy Y.</creator><creator>Fung, Megan E.</creator><creator>Martinez, Daniela</creator><creator>Chen, Alex C. 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Y. ; LaSalle, Thomas J. ; Miller, Brian C. ; Scharer, Christopher D. ; Hegde, Mudra ; Nguyen, Thao H. ; Rowe, Jared H. ; Osborn, Jossef F. ; Patterson, Dillon G. ; Sifnugel, Natalia ; Mei-An Nolan, C. ; Davidson, Richard A. ; Schwartz, Marc A. ; Bally, Alexander P. 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Y.</au><au>LaSalle, Thomas J.</au><au>Miller, Brian C.</au><au>Scharer, Christopher D.</au><au>Hegde, Mudra</au><au>Nguyen, Thao H.</au><au>Rowe, Jared H.</au><au>Osborn, Jossef F.</au><au>Patterson, Dillon G.</au><au>Sifnugel, Natalia</au><au>Mei-An Nolan, C.</au><au>Davidson, Richard A.</au><au>Schwartz, Marc A.</au><au>Bally, Alexander P. R.</au><au>Neeld, Dennis K.</au><au>LaFleur, Martin W.</au><au>Boss, Jeremy M.</au><au>Doench, John G.</au><au>Nicholas Haining, W.</au><au>Sharpe, Arlene H.</au><au>Sen, Debattama R.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Epigenetic tuning of PD-1 expression improves exhausted T cell function and viral control</atitle><jtitle>Nature immunology</jtitle><stitle>Nat Immunol</stitle><addtitle>Nat Immunol</addtitle><date>2024-10-01</date><risdate>2024</risdate><volume>25</volume><issue>10</issue><spage>1871</spage><epage>1883</epage><pages>1871-1883</pages><issn>1529-2908</issn><issn>1529-2916</issn><eissn>1529-2916</eissn><abstract>PD-1 is a key negative regulator of CD8
+
T cell activation and is highly expressed by exhausted T cells in cancer and chronic viral infection. Although PD-1 blockade can improve viral and tumor control, physiological PD-1 expression prevents immunopathology and improves memory formation. The mechanisms driving high PD-1 expression in exhaustion are not well understood and could be critical to disentangling its beneficial and detrimental effects. Here, we functionally interrogated the epigenetic regulation of PD-1 using a mouse model with deletion of an exhaustion-specific PD-1 enhancer. Enhancer deletion exclusively alters PD-1 expression in CD8
+
T cells in chronic infection, creating a ‘sweet spot’ of intermediate expression where T cell function is optimized compared to wild-type and
Pdcd1
-knockout cells. This permits improved control of chronic infection without additional immunopathology. Together, these results demonstrate that tuning PD-1 via epigenetic editing can reduce CD8
+
T cell dysfunction while avoiding excess immunopathology.
PD-1 is a critical modulator of CD8
+
T cell activation and exhaustion. Sen and colleagues show that a cell-state-specific enhancer tunes PD-1 expression exclusively in exhaustion and that deletion of this enhancer improves CD8
+
T cell function.</abstract><cop>New York</cop><pub>Nature Publishing Group US</pub><pmid>39289557</pmid><doi>10.1038/s41590-024-01961-3</doi><tpages>13</tpages><orcidid>https://orcid.org/0000-0002-6646-6503</orcidid><orcidid>https://orcid.org/0000-0001-7716-8504</orcidid><orcidid>https://orcid.org/0000-0002-3707-9889</orcidid><orcidid>https://orcid.org/0000-0002-9736-2109</orcidid><orcidid>https://orcid.org/0000-0002-4155-0346</orcidid><orcidid>https://orcid.org/0000-0002-8109-7339</orcidid><orcidid>https://orcid.org/0000-0002-8358-5408</orcidid><orcidid>https://orcid.org/0000-0001-7871-3762</orcidid><orcidid>https://orcid.org/0000-0002-2432-1840</orcidid><orcidid>https://orcid.org/0000-0002-5017-774X</orcidid><orcidid>https://orcid.org/0000-0002-0947-8284</orcidid><orcidid>https://orcid.org/0000-0003-3869-0150</orcidid><orcidid>https://orcid.org/0000-0002-2767-0528</orcidid></addata></record> |
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source | MEDLINE; Springer Nature - Complete Springer Journals; Nature Journals Online |
subjects | 631/250/1619/554/1834 631/250/2502/2170 631/250/255/2514 631/337/100/102 Animals Biomedical and Life Sciences Biomedicine CD8 antigen CD8-Positive T-Lymphocytes - immunology Cell activation Chronic infection Clonal deletion Enhancer Elements, Genetic - genetics Epigenesis, Genetic Epigenetics Immunological memory Immunology Infections Infectious Diseases Lymphocyte Activation - immunology Lymphocytes Lymphocytes T Lymphocytic Choriomeningitis - immunology Lymphocytic Choriomeningitis - virology Memory cells Mice Mice, Inbred C57BL Mice, Knockout PD-1 protein Programmed Cell Death 1 Receptor - genetics Programmed Cell Death 1 Receptor - metabolism Viral infections |
title | Epigenetic tuning of PD-1 expression improves exhausted T cell function and viral control |
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