Novel chiral phthalimides: Antimicrobial evaluation and docking study against Acinetobacter baumannii's OmpA protein

Antibiotics have been a vital component in the fight against microbial diseases for over 75 years, saving countless lives. However, the global rise of multi-drug-resistance (MDR) bacterial infections is pushing us closer to a post-antibiotic era where common infections may once again become lethal....

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Veröffentlicht in:Computers in biology and medicine 2024-11, Vol.182, p.109099, Article 109099
Hauptverfasser: Abid, Rimsha, Khan, Momin, Siddique, Nayyer, Khan, Sher Wali, Khan, Rahat Ullah, Zahoor, Muhammad, Ullah, Riaz, Alotaibi, Amal
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container_start_page 109099
container_title Computers in biology and medicine
container_volume 182
creator Abid, Rimsha
Khan, Momin
Siddique, Nayyer
Khan, Sher Wali
Khan, Rahat Ullah
Zahoor, Muhammad
Ullah, Riaz
Alotaibi, Amal
description Antibiotics have been a vital component in the fight against microbial diseases for over 75 years, saving countless lives. However, the global rise of multi-drug-resistance (MDR) bacterial infections is pushing us closer to a post-antibiotic era where common infections may once again become lethal. To combat MDR Acinetobacter baumannii, we investigated chiral phthalimides and used molecular docking to identify potential targets. Outer membrane protein A (OmpA) is crucial for A. baumannii resistant to antibiotics, making it a pathogen of great concern due to its high mortality rate and limited treatment options. In this study, we evaluated three distinct compounds against the OmpA protein: FIA (2-(1,3-dioxoindolin-2yl)-3-phenylpropanoic acid), FIC (2-(1,3-dioxoindolin-2yl)-4-(methylthio) butanoic acid), and FII (3-(1,3-dioxoindolin-2yl)-3-phenylpropanoic acid). Molecular docking results showed that these three compounds exhibited strong interactions with the OmpA protein. Molecular dynamics (MD) simulation analysis further confirmed the stability and binding efficacy of these compounds with OmpA. Their antimicrobial activities were assessed using the agar well diffusion method, revealing that FIA had an optimal zone of inhibition of 24 mm. Additionally, the minimum inhibitory concentrations (MIC) of these compounds were determined, demonstrating their bactericidal properties against A. baumannii, with MICs of 11 μg/μL for FIA, 46 μg/μL for FIC, and 375 μg/μL for FII. In vitro cytotoxicity data indicated that none of the three compounds were hemolytic when exposed to human red blood cells. This finding is particularly significant as it highlights the superior efficacy of FIA against A. baumannii compared to the other compounds. With thorough pharmacokinetic validations, these chiral phthalimides are promising alternative therapeutic options for treating infections caused by A. baumannii, offering new hope in the face of rising antibiotic resistance. •The study provides new insights into development of alternative antibacterial drug against resistant A. baumannii.•The interaction of FIA, FIC, and FII with the OmpA protein have also been confirmed through molecular docking analysis.•All three compounds showed strong interaction with the OmpA protein.•FIA exhibited superior efficacy against A. baumannii compared to the FIC and FII.•In vitro cytotoxicity tests revealed that none of the compounds were hemolytic to human erythrocytes.
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However, the global rise of multi-drug-resistance (MDR) bacterial infections is pushing us closer to a post-antibiotic era where common infections may once again become lethal. To combat MDR Acinetobacter baumannii, we investigated chiral phthalimides and used molecular docking to identify potential targets. Outer membrane protein A (OmpA) is crucial for A. baumannii resistant to antibiotics, making it a pathogen of great concern due to its high mortality rate and limited treatment options. In this study, we evaluated three distinct compounds against the OmpA protein: FIA (2-(1,3-dioxoindolin-2yl)-3-phenylpropanoic acid), FIC (2-(1,3-dioxoindolin-2yl)-4-(methylthio) butanoic acid), and FII (3-(1,3-dioxoindolin-2yl)-3-phenylpropanoic acid). Molecular docking results showed that these three compounds exhibited strong interactions with the OmpA protein. Molecular dynamics (MD) simulation analysis further confirmed the stability and binding efficacy of these compounds with OmpA. Their antimicrobial activities were assessed using the agar well diffusion method, revealing that FIA had an optimal zone of inhibition of 24 mm. Additionally, the minimum inhibitory concentrations (MIC) of these compounds were determined, demonstrating their bactericidal properties against A. baumannii, with MICs of 11 μg/μL for FIA, 46 μg/μL for FIC, and 375 μg/μL for FII. In vitro cytotoxicity data indicated that none of the three compounds were hemolytic when exposed to human red blood cells. This finding is particularly significant as it highlights the superior efficacy of FIA against A. baumannii compared to the other compounds. With thorough pharmacokinetic validations, these chiral phthalimides are promising alternative therapeutic options for treating infections caused by A. baumannii, offering new hope in the face of rising antibiotic resistance. •The study provides new insights into development of alternative antibacterial drug against resistant A. baumannii.•The interaction of FIA, FIC, and FII with the OmpA protein have also been confirmed through molecular docking analysis.•All three compounds showed strong interaction with the OmpA protein.•FIA exhibited superior efficacy against A. baumannii compared to the FIC and FII.•In vitro cytotoxicity tests revealed that none of the compounds were hemolytic to human erythrocytes.</description><identifier>ISSN: 0010-4825</identifier><identifier>ISSN: 1879-0534</identifier><identifier>EISSN: 1879-0534</identifier><identifier>DOI: 10.1016/j.compbiomed.2024.109099</identifier><identifier>PMID: 39265475</identifier><language>eng</language><publisher>United States: Elsevier Ltd</publisher><subject>Acinetobacter baumannii ; Acinetobacter baumannii - drug effects ; Anti-Bacterial Agents - chemistry ; Anti-Bacterial Agents - pharmacology ; Antibacterial activity ; Antibiotic resistance ; Antibiotics ; Bacterial Outer Membrane Proteins - chemistry ; Bacterial Outer Membrane Proteins - metabolism ; Biofilms ; Butyric acid ; Chiral phthalimides ; Cytotoxicity ; Drug resistance ; Effectiveness ; Erythrocytes ; Humans ; Hydrocinnamic acid ; Ligands ; MD simulation ; Microorganisms ; Molecular docking ; Molecular Docking Simulation ; Molecular dynamics ; Multidrug resistance ; OmpA protein ; Outer membrane protein A (OmpA) ; Outer membrane proteins ; Pharmacokinetics ; Pharmacology ; Phthalimides ; Phthalimides - chemistry ; Phthalimides - pharmacology ; Pneumonia ; Protein A ; Proteins ; Simulation ; Stability analysis ; Toxicity ; Tumor necrosis factor-TNF ; Virulence</subject><ispartof>Computers in biology and medicine, 2024-11, Vol.182, p.109099, Article 109099</ispartof><rights>2024 Elsevier Ltd</rights><rights>Copyright © 2024 Elsevier Ltd. 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However, the global rise of multi-drug-resistance (MDR) bacterial infections is pushing us closer to a post-antibiotic era where common infections may once again become lethal. To combat MDR Acinetobacter baumannii, we investigated chiral phthalimides and used molecular docking to identify potential targets. Outer membrane protein A (OmpA) is crucial for A. baumannii resistant to antibiotics, making it a pathogen of great concern due to its high mortality rate and limited treatment options. In this study, we evaluated three distinct compounds against the OmpA protein: FIA (2-(1,3-dioxoindolin-2yl)-3-phenylpropanoic acid), FIC (2-(1,3-dioxoindolin-2yl)-4-(methylthio) butanoic acid), and FII (3-(1,3-dioxoindolin-2yl)-3-phenylpropanoic acid). Molecular docking results showed that these three compounds exhibited strong interactions with the OmpA protein. Molecular dynamics (MD) simulation analysis further confirmed the stability and binding efficacy of these compounds with OmpA. Their antimicrobial activities were assessed using the agar well diffusion method, revealing that FIA had an optimal zone of inhibition of 24 mm. Additionally, the minimum inhibitory concentrations (MIC) of these compounds were determined, demonstrating their bactericidal properties against A. baumannii, with MICs of 11 μg/μL for FIA, 46 μg/μL for FIC, and 375 μg/μL for FII. In vitro cytotoxicity data indicated that none of the three compounds were hemolytic when exposed to human red blood cells. This finding is particularly significant as it highlights the superior efficacy of FIA against A. baumannii compared to the other compounds. 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However, the global rise of multi-drug-resistance (MDR) bacterial infections is pushing us closer to a post-antibiotic era where common infections may once again become lethal. To combat MDR Acinetobacter baumannii, we investigated chiral phthalimides and used molecular docking to identify potential targets. Outer membrane protein A (OmpA) is crucial for A. baumannii resistant to antibiotics, making it a pathogen of great concern due to its high mortality rate and limited treatment options. In this study, we evaluated three distinct compounds against the OmpA protein: FIA (2-(1,3-dioxoindolin-2yl)-3-phenylpropanoic acid), FIC (2-(1,3-dioxoindolin-2yl)-4-(methylthio) butanoic acid), and FII (3-(1,3-dioxoindolin-2yl)-3-phenylpropanoic acid). Molecular docking results showed that these three compounds exhibited strong interactions with the OmpA protein. Molecular dynamics (MD) simulation analysis further confirmed the stability and binding efficacy of these compounds with OmpA. Their antimicrobial activities were assessed using the agar well diffusion method, revealing that FIA had an optimal zone of inhibition of 24 mm. Additionally, the minimum inhibitory concentrations (MIC) of these compounds were determined, demonstrating their bactericidal properties against A. baumannii, with MICs of 11 μg/μL for FIA, 46 μg/μL for FIC, and 375 μg/μL for FII. In vitro cytotoxicity data indicated that none of the three compounds were hemolytic when exposed to human red blood cells. This finding is particularly significant as it highlights the superior efficacy of FIA against A. baumannii compared to the other compounds. 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subjects Acinetobacter baumannii
Acinetobacter baumannii - drug effects
Anti-Bacterial Agents - chemistry
Anti-Bacterial Agents - pharmacology
Antibacterial activity
Antibiotic resistance
Antibiotics
Bacterial Outer Membrane Proteins - chemistry
Bacterial Outer Membrane Proteins - metabolism
Biofilms
Butyric acid
Chiral phthalimides
Cytotoxicity
Drug resistance
Effectiveness
Erythrocytes
Humans
Hydrocinnamic acid
Ligands
MD simulation
Microorganisms
Molecular docking
Molecular Docking Simulation
Molecular dynamics
Multidrug resistance
OmpA protein
Outer membrane protein A (OmpA)
Outer membrane proteins
Pharmacokinetics
Pharmacology
Phthalimides
Phthalimides - chemistry
Phthalimides - pharmacology
Pneumonia
Protein A
Proteins
Simulation
Stability analysis
Toxicity
Tumor necrosis factor-TNF
Virulence
title Novel chiral phthalimides: Antimicrobial evaluation and docking study against Acinetobacter baumannii's OmpA protein
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