Novel chiral phthalimides: Antimicrobial evaluation and docking study against Acinetobacter baumannii's OmpA protein
Antibiotics have been a vital component in the fight against microbial diseases for over 75 years, saving countless lives. However, the global rise of multi-drug-resistance (MDR) bacterial infections is pushing us closer to a post-antibiotic era where common infections may once again become lethal....
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description | Antibiotics have been a vital component in the fight against microbial diseases for over 75 years, saving countless lives. However, the global rise of multi-drug-resistance (MDR) bacterial infections is pushing us closer to a post-antibiotic era where common infections may once again become lethal. To combat MDR Acinetobacter baumannii, we investigated chiral phthalimides and used molecular docking to identify potential targets. Outer membrane protein A (OmpA) is crucial for A. baumannii resistant to antibiotics, making it a pathogen of great concern due to its high mortality rate and limited treatment options. In this study, we evaluated three distinct compounds against the OmpA protein: FIA (2-(1,3-dioxoindolin-2yl)-3-phenylpropanoic acid), FIC (2-(1,3-dioxoindolin-2yl)-4-(methylthio) butanoic acid), and FII (3-(1,3-dioxoindolin-2yl)-3-phenylpropanoic acid). Molecular docking results showed that these three compounds exhibited strong interactions with the OmpA protein. Molecular dynamics (MD) simulation analysis further confirmed the stability and binding efficacy of these compounds with OmpA. Their antimicrobial activities were assessed using the agar well diffusion method, revealing that FIA had an optimal zone of inhibition of 24 mm. Additionally, the minimum inhibitory concentrations (MIC) of these compounds were determined, demonstrating their bactericidal properties against A. baumannii, with MICs of 11 μg/μL for FIA, 46 μg/μL for FIC, and 375 μg/μL for FII. In vitro cytotoxicity data indicated that none of the three compounds were hemolytic when exposed to human red blood cells. This finding is particularly significant as it highlights the superior efficacy of FIA against A. baumannii compared to the other compounds. With thorough pharmacokinetic validations, these chiral phthalimides are promising alternative therapeutic options for treating infections caused by A. baumannii, offering new hope in the face of rising antibiotic resistance.
•The study provides new insights into development of alternative antibacterial drug against resistant A. baumannii.•The interaction of FIA, FIC, and FII with the OmpA protein have also been confirmed through molecular docking analysis.•All three compounds showed strong interaction with the OmpA protein.•FIA exhibited superior efficacy against A. baumannii compared to the FIC and FII.•In vitro cytotoxicity tests revealed that none of the compounds were hemolytic to human erythrocytes. |
doi_str_mv | 10.1016/j.compbiomed.2024.109099 |
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•The study provides new insights into development of alternative antibacterial drug against resistant A. baumannii.•The interaction of FIA, FIC, and FII with the OmpA protein have also been confirmed through molecular docking analysis.•All three compounds showed strong interaction with the OmpA protein.•FIA exhibited superior efficacy against A. baumannii compared to the FIC and FII.•In vitro cytotoxicity tests revealed that none of the compounds were hemolytic to human erythrocytes.</description><identifier>ISSN: 0010-4825</identifier><identifier>ISSN: 1879-0534</identifier><identifier>EISSN: 1879-0534</identifier><identifier>DOI: 10.1016/j.compbiomed.2024.109099</identifier><identifier>PMID: 39265475</identifier><language>eng</language><publisher>United States: Elsevier Ltd</publisher><subject>Acinetobacter baumannii ; Acinetobacter baumannii - drug effects ; Anti-Bacterial Agents - chemistry ; Anti-Bacterial Agents - pharmacology ; Antibacterial activity ; Antibiotic resistance ; Antibiotics ; Bacterial Outer Membrane Proteins - chemistry ; Bacterial Outer Membrane Proteins - metabolism ; Biofilms ; Butyric acid ; Chiral phthalimides ; Cytotoxicity ; Drug resistance ; Effectiveness ; Erythrocytes ; Humans ; Hydrocinnamic acid ; Ligands ; MD simulation ; Microorganisms ; Molecular docking ; Molecular Docking Simulation ; Molecular dynamics ; Multidrug resistance ; OmpA protein ; Outer membrane protein A (OmpA) ; Outer membrane proteins ; Pharmacokinetics ; Pharmacology ; Phthalimides ; Phthalimides - chemistry ; Phthalimides - pharmacology ; Pneumonia ; Protein A ; Proteins ; Simulation ; Stability analysis ; Toxicity ; Tumor necrosis factor-TNF ; Virulence</subject><ispartof>Computers in biology and medicine, 2024-11, Vol.182, p.109099, Article 109099</ispartof><rights>2024 Elsevier Ltd</rights><rights>Copyright © 2024 Elsevier Ltd. All rights reserved.</rights><rights>2024. Elsevier Ltd</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c1925-304e387166975f2a7296bf11ffc45d93190baeba99ec87c28636e4cb0b7696163</cites><orcidid>0000-0002-4528-8517</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.compbiomed.2024.109099$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,780,784,3550,27924,27925,45995</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/39265475$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Abid, Rimsha</creatorcontrib><creatorcontrib>Khan, Momin</creatorcontrib><creatorcontrib>Siddique, Nayyer</creatorcontrib><creatorcontrib>Khan, Sher Wali</creatorcontrib><creatorcontrib>Khan, Rahat Ullah</creatorcontrib><creatorcontrib>Zahoor, Muhammad</creatorcontrib><creatorcontrib>Ullah, Riaz</creatorcontrib><creatorcontrib>Alotaibi, Amal</creatorcontrib><title>Novel chiral phthalimides: Antimicrobial evaluation and docking study against Acinetobacter baumannii's OmpA protein</title><title>Computers in biology and medicine</title><addtitle>Comput Biol Med</addtitle><description>Antibiotics have been a vital component in the fight against microbial diseases for over 75 years, saving countless lives. However, the global rise of multi-drug-resistance (MDR) bacterial infections is pushing us closer to a post-antibiotic era where common infections may once again become lethal. To combat MDR Acinetobacter baumannii, we investigated chiral phthalimides and used molecular docking to identify potential targets. Outer membrane protein A (OmpA) is crucial for A. baumannii resistant to antibiotics, making it a pathogen of great concern due to its high mortality rate and limited treatment options. In this study, we evaluated three distinct compounds against the OmpA protein: FIA (2-(1,3-dioxoindolin-2yl)-3-phenylpropanoic acid), FIC (2-(1,3-dioxoindolin-2yl)-4-(methylthio) butanoic acid), and FII (3-(1,3-dioxoindolin-2yl)-3-phenylpropanoic acid). Molecular docking results showed that these three compounds exhibited strong interactions with the OmpA protein. Molecular dynamics (MD) simulation analysis further confirmed the stability and binding efficacy of these compounds with OmpA. Their antimicrobial activities were assessed using the agar well diffusion method, revealing that FIA had an optimal zone of inhibition of 24 mm. Additionally, the minimum inhibitory concentrations (MIC) of these compounds were determined, demonstrating their bactericidal properties against A. baumannii, with MICs of 11 μg/μL for FIA, 46 μg/μL for FIC, and 375 μg/μL for FII. In vitro cytotoxicity data indicated that none of the three compounds were hemolytic when exposed to human red blood cells. This finding is particularly significant as it highlights the superior efficacy of FIA against A. baumannii compared to the other compounds. With thorough pharmacokinetic validations, these chiral phthalimides are promising alternative therapeutic options for treating infections caused by A. baumannii, offering new hope in the face of rising antibiotic resistance.
•The study provides new insights into development of alternative antibacterial drug against resistant A. baumannii.•The interaction of FIA, FIC, and FII with the OmpA protein have also been confirmed through molecular docking analysis.•All three compounds showed strong interaction with the OmpA protein.•FIA exhibited superior efficacy against A. baumannii compared to the FIC and FII.•In vitro cytotoxicity tests revealed that none of the compounds were hemolytic to human erythrocytes.</description><subject>Acinetobacter baumannii</subject><subject>Acinetobacter baumannii - drug effects</subject><subject>Anti-Bacterial Agents - chemistry</subject><subject>Anti-Bacterial Agents - pharmacology</subject><subject>Antibacterial activity</subject><subject>Antibiotic resistance</subject><subject>Antibiotics</subject><subject>Bacterial Outer Membrane Proteins - chemistry</subject><subject>Bacterial Outer Membrane Proteins - metabolism</subject><subject>Biofilms</subject><subject>Butyric acid</subject><subject>Chiral phthalimides</subject><subject>Cytotoxicity</subject><subject>Drug resistance</subject><subject>Effectiveness</subject><subject>Erythrocytes</subject><subject>Humans</subject><subject>Hydrocinnamic acid</subject><subject>Ligands</subject><subject>MD simulation</subject><subject>Microorganisms</subject><subject>Molecular docking</subject><subject>Molecular Docking Simulation</subject><subject>Molecular dynamics</subject><subject>Multidrug resistance</subject><subject>OmpA protein</subject><subject>Outer membrane protein A (OmpA)</subject><subject>Outer membrane proteins</subject><subject>Pharmacokinetics</subject><subject>Pharmacology</subject><subject>Phthalimides</subject><subject>Phthalimides - chemistry</subject><subject>Phthalimides - pharmacology</subject><subject>Pneumonia</subject><subject>Protein A</subject><subject>Proteins</subject><subject>Simulation</subject><subject>Stability analysis</subject><subject>Toxicity</subject><subject>Tumor necrosis factor-TNF</subject><subject>Virulence</subject><issn>0010-4825</issn><issn>1879-0534</issn><issn>1879-0534</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkU9v1DAQxS0EotvCV0CWOMAli__FibktFRSkil7gbNnOpOslsYPtrNRvj1fbCokLJ488v5k3eg8hTMmWEio_HLYuzov1cYZhywgT9VsRpZ6hDe071ZCWi-doQwgljehZe4Eucz4QQgTh5CW64IrJVnTtBpXv8QgTdnufzISXfdmbyc9-gPwR70KppUvR-tqDo5lWU3wM2IQBD9H98uEe57IOD9jcGx9ywTvnA5RojSuQsDXrbELw_l3Gd_Oyw0uKBXx4hV6MZsrw-vG9Qj-_fP5x_bW5vbv5dr27bRxVrG04EcD7jkqpunZkpmNK2pHScXSiHRSnilgD1igFru8c6yWXIJwltpNKUsmv0Pvz3qr7e4Vc9Oyzg2kyAeKaNacnQ3rGSEXf_oMe4ppCva5SrFVKSiEq1Z-pakrOCUa9JD-b9KAp0adk9EH_TUafktHnZOrom0eB1Z56T4NPUVTg0xmA6sjRQ9LZeQgOBp_AFT1E_3-VP-BgpNA</recordid><startdate>202411</startdate><enddate>202411</enddate><creator>Abid, Rimsha</creator><creator>Khan, Momin</creator><creator>Siddique, Nayyer</creator><creator>Khan, Sher Wali</creator><creator>Khan, Rahat Ullah</creator><creator>Zahoor, Muhammad</creator><creator>Ullah, Riaz</creator><creator>Alotaibi, Amal</creator><general>Elsevier Ltd</general><general>Elsevier Limited</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>8FD</scope><scope>FR3</scope><scope>JQ2</scope><scope>K9.</scope><scope>M7Z</scope><scope>NAPCQ</scope><scope>P64</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-4528-8517</orcidid></search><sort><creationdate>202411</creationdate><title>Novel chiral phthalimides: Antimicrobial evaluation and docking study against Acinetobacter baumannii's OmpA protein</title><author>Abid, Rimsha ; 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However, the global rise of multi-drug-resistance (MDR) bacterial infections is pushing us closer to a post-antibiotic era where common infections may once again become lethal. To combat MDR Acinetobacter baumannii, we investigated chiral phthalimides and used molecular docking to identify potential targets. Outer membrane protein A (OmpA) is crucial for A. baumannii resistant to antibiotics, making it a pathogen of great concern due to its high mortality rate and limited treatment options. In this study, we evaluated three distinct compounds against the OmpA protein: FIA (2-(1,3-dioxoindolin-2yl)-3-phenylpropanoic acid), FIC (2-(1,3-dioxoindolin-2yl)-4-(methylthio) butanoic acid), and FII (3-(1,3-dioxoindolin-2yl)-3-phenylpropanoic acid). Molecular docking results showed that these three compounds exhibited strong interactions with the OmpA protein. Molecular dynamics (MD) simulation analysis further confirmed the stability and binding efficacy of these compounds with OmpA. Their antimicrobial activities were assessed using the agar well diffusion method, revealing that FIA had an optimal zone of inhibition of 24 mm. Additionally, the minimum inhibitory concentrations (MIC) of these compounds were determined, demonstrating their bactericidal properties against A. baumannii, with MICs of 11 μg/μL for FIA, 46 μg/μL for FIC, and 375 μg/μL for FII. In vitro cytotoxicity data indicated that none of the three compounds were hemolytic when exposed to human red blood cells. This finding is particularly significant as it highlights the superior efficacy of FIA against A. baumannii compared to the other compounds. With thorough pharmacokinetic validations, these chiral phthalimides are promising alternative therapeutic options for treating infections caused by A. baumannii, offering new hope in the face of rising antibiotic resistance.
•The study provides new insights into development of alternative antibacterial drug against resistant A. baumannii.•The interaction of FIA, FIC, and FII with the OmpA protein have also been confirmed through molecular docking analysis.•All three compounds showed strong interaction with the OmpA protein.•FIA exhibited superior efficacy against A. baumannii compared to the FIC and FII.•In vitro cytotoxicity tests revealed that none of the compounds were hemolytic to human erythrocytes.</abstract><cop>United States</cop><pub>Elsevier Ltd</pub><pmid>39265475</pmid><doi>10.1016/j.compbiomed.2024.109099</doi><orcidid>https://orcid.org/0000-0002-4528-8517</orcidid></addata></record> |
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subjects | Acinetobacter baumannii Acinetobacter baumannii - drug effects Anti-Bacterial Agents - chemistry Anti-Bacterial Agents - pharmacology Antibacterial activity Antibiotic resistance Antibiotics Bacterial Outer Membrane Proteins - chemistry Bacterial Outer Membrane Proteins - metabolism Biofilms Butyric acid Chiral phthalimides Cytotoxicity Drug resistance Effectiveness Erythrocytes Humans Hydrocinnamic acid Ligands MD simulation Microorganisms Molecular docking Molecular Docking Simulation Molecular dynamics Multidrug resistance OmpA protein Outer membrane protein A (OmpA) Outer membrane proteins Pharmacokinetics Pharmacology Phthalimides Phthalimides - chemistry Phthalimides - pharmacology Pneumonia Protein A Proteins Simulation Stability analysis Toxicity Tumor necrosis factor-TNF Virulence |
title | Novel chiral phthalimides: Antimicrobial evaluation and docking study against Acinetobacter baumannii's OmpA protein |
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