Monte Carlo investigation of the nucleus size effect and cell’s oxygen content on the damage efficiency of protons
Living tissues could suffer different types of DNA damage as a result of being exposed to ionizing radiations. Monte Carlo simulations of the underlying interactions have been instrumental in predicting the damage types and the processes involved. In this work, we employed Geant4-DNA and MCDS for ex...
Gespeichert in:
Veröffentlicht in: | Biomedical physics & engineering express 2024-09, Vol.10 (6), p.65007 |
---|---|
Hauptverfasser: | , , |
Format: | Artikel |
Sprache: | eng |
Schlagworte: | |
Online-Zugang: | Volltext |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
container_end_page | |
---|---|
container_issue | 6 |
container_start_page | 65007 |
container_title | Biomedical physics & engineering express |
container_volume | 10 |
creator | Mokari, Mojtaba Moeini, Hossein Eslamifar, Mina |
description | Living tissues could suffer different types of DNA damage as a result of being exposed to ionizing radiations. Monte Carlo simulations of the underlying interactions have been instrumental in predicting the damage types and the processes involved. In this work, we employed Geant4-DNA and MCDS for extracting the initial DNA damage and investigating the dependence of damage efficiency on the cell's oxygen content. The frequency-mean lineal (y¯F) and specific (z¯F) energies were derived for a spherical volume of water of various diameters between 2 and 11.1 μm. This sphere would serve as the nucleus of a cell of 100 μm diameter, engulfed by a homogeneous beam of protons. These microdosimetric quantities were calculated assuming spherical samples of 1 μm diameter in MCDS. The simulation results showed that for 230 MeV protons, an increase in the oxygen content from 0 by 10% raised the frequency of single- and double-strand breaks and lowered the base damage frequency. The resulting damage frequencies appeared to be independent of nucleus diameter. For proton energies between 2 and 230 MeV,y¯Fshowed no dependence on the cell diameter and an increase of the cell size resulted in a decrease inz¯F.An increase in the proton energy slowed down the decreasing rate ofz¯Fas a function of nucleus diameter. However, the ratio ofy¯Fvalues corresponding to two proton energies of choice showed no dependence on the nucleus size and were equal to the ratio of the correspondingz¯Fvalues. Furthermore, the oxygen content of the cell did not affect these microdosimetric quantities. Contrary to damage frequencies, these quantities appeared to depend only on direct interactions due to deposited energies. Our calculations showed the near independence of DNA damages on the nucleus size of the human cells. The probabilities of different types of single and double-strand breaks increase with the oxygen content. |
doi_str_mv | 10.1088/2057-1976/ad7598 |
format | Article |
fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_3102877496</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>3102877496</sourcerecordid><originalsourceid>FETCH-LOGICAL-c219t-a51900444bdec2f3702f53d518623ec575bbecbae5edf0976418d36ed010d7c23</originalsourceid><addsrcrecordid>eNp1kL1OwzAUhS0EolXpzoQ8MhCwnTg_I6r4k4pYYLYc-6a4Su0SO4gy8Rq8Hk9CQkrFwuQr65xz7_kQOqbknJI8v2CEZxEtsvRC6owX-R4a7772_8wjNPV-SQihKUvTgh-iUVwwzkmcjFG4dzYAnsmmdtjYV_DBLGQwzmJX4fAM2LaqhtZjb94BQ1WBClhajRXU9dfHp8fubbMAi1UfZAPunL1Ny5Vc_BiMMmDVps9bNy4464_QQSVrD9PtO0FP11ePs9to_nBzN7ucR4rRIkSS04KQJElKDYpVcUZYxWPNaZ6yGBTPeFmCKiVw0BXpmiY013EKmlCiM8XiCTodcru9L21XTayM7--WFlzrRUwJy7MsKdJOSgapapz3DVRi3ZiVbDaCEtHjFj1P0fMUA-7OcrJNb8sV6J3hF24nOBsExq3F0rWN7cr-n_cNi9yKrw</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>3102877496</pqid></control><display><type>article</type><title>Monte Carlo investigation of the nucleus size effect and cell’s oxygen content on the damage efficiency of protons</title><source>MEDLINE</source><source>IOP Publishing Journals</source><source>Institute of Physics (IOP) Journals - HEAL-Link</source><creator>Mokari, Mojtaba ; Moeini, Hossein ; Eslamifar, Mina</creator><creatorcontrib>Mokari, Mojtaba ; Moeini, Hossein ; Eslamifar, Mina</creatorcontrib><description>Living tissues could suffer different types of DNA damage as a result of being exposed to ionizing radiations. Monte Carlo simulations of the underlying interactions have been instrumental in predicting the damage types and the processes involved. In this work, we employed Geant4-DNA and MCDS for extracting the initial DNA damage and investigating the dependence of damage efficiency on the cell's oxygen content. The frequency-mean lineal (y¯F) and specific (z¯F) energies were derived for a spherical volume of water of various diameters between 2 and 11.1 μm. This sphere would serve as the nucleus of a cell of 100 μm diameter, engulfed by a homogeneous beam of protons. These microdosimetric quantities were calculated assuming spherical samples of 1 μm diameter in MCDS. The simulation results showed that for 230 MeV protons, an increase in the oxygen content from 0 by 10% raised the frequency of single- and double-strand breaks and lowered the base damage frequency. The resulting damage frequencies appeared to be independent of nucleus diameter. For proton energies between 2 and 230 MeV,y¯Fshowed no dependence on the cell diameter and an increase of the cell size resulted in a decrease inz¯F.An increase in the proton energy slowed down the decreasing rate ofz¯Fas a function of nucleus diameter. However, the ratio ofy¯Fvalues corresponding to two proton energies of choice showed no dependence on the nucleus size and were equal to the ratio of the correspondingz¯Fvalues. Furthermore, the oxygen content of the cell did not affect these microdosimetric quantities. Contrary to damage frequencies, these quantities appeared to depend only on direct interactions due to deposited energies. Our calculations showed the near independence of DNA damages on the nucleus size of the human cells. The probabilities of different types of single and double-strand breaks increase with the oxygen content.</description><identifier>ISSN: 2057-1976</identifier><identifier>EISSN: 2057-1976</identifier><identifier>DOI: 10.1088/2057-1976/ad7598</identifier><identifier>PMID: 39255034</identifier><language>eng</language><publisher>England: IOP Publishing</publisher><subject>Cell Nucleus - metabolism ; Cell Nucleus - radiation effects ; Cell Nucleus Size ; Computer Simulation ; DNA ; DNA Breaks, Double-Stranded - radiation effects ; DNA Damage ; double-strand break ; Geant4-DNA ; Humans ; lineal energy ; MCDS ; Monte Carlo Method ; Oxygen - metabolism ; oxygen content ; Protons ; specific energy ; Water</subject><ispartof>Biomedical physics & engineering express, 2024-09, Vol.10 (6), p.65007</ispartof><rights>2024 IOP Publishing Ltd. All rights, including for text and data mining, AI training, and similar technologies, are reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c219t-a51900444bdec2f3702f53d518623ec575bbecbae5edf0976418d36ed010d7c23</cites><orcidid>0000-0001-6282-1486 ; 0000-0003-3361-7966</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://iopscience.iop.org/article/10.1088/2057-1976/ad7598/pdf$$EPDF$$P50$$Giop$$H</linktopdf><link.rule.ids>314,780,784,27924,27925,53846,53893</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/39255034$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Mokari, Mojtaba</creatorcontrib><creatorcontrib>Moeini, Hossein</creatorcontrib><creatorcontrib>Eslamifar, Mina</creatorcontrib><title>Monte Carlo investigation of the nucleus size effect and cell’s oxygen content on the damage efficiency of protons</title><title>Biomedical physics & engineering express</title><addtitle>BPEX</addtitle><addtitle>Biomed. Phys. Eng. Express</addtitle><description>Living tissues could suffer different types of DNA damage as a result of being exposed to ionizing radiations. Monte Carlo simulations of the underlying interactions have been instrumental in predicting the damage types and the processes involved. In this work, we employed Geant4-DNA and MCDS for extracting the initial DNA damage and investigating the dependence of damage efficiency on the cell's oxygen content. The frequency-mean lineal (y¯F) and specific (z¯F) energies were derived for a spherical volume of water of various diameters between 2 and 11.1 μm. This sphere would serve as the nucleus of a cell of 100 μm diameter, engulfed by a homogeneous beam of protons. These microdosimetric quantities were calculated assuming spherical samples of 1 μm diameter in MCDS. The simulation results showed that for 230 MeV protons, an increase in the oxygen content from 0 by 10% raised the frequency of single- and double-strand breaks and lowered the base damage frequency. The resulting damage frequencies appeared to be independent of nucleus diameter. For proton energies between 2 and 230 MeV,y¯Fshowed no dependence on the cell diameter and an increase of the cell size resulted in a decrease inz¯F.An increase in the proton energy slowed down the decreasing rate ofz¯Fas a function of nucleus diameter. However, the ratio ofy¯Fvalues corresponding to two proton energies of choice showed no dependence on the nucleus size and were equal to the ratio of the correspondingz¯Fvalues. Furthermore, the oxygen content of the cell did not affect these microdosimetric quantities. Contrary to damage frequencies, these quantities appeared to depend only on direct interactions due to deposited energies. Our calculations showed the near independence of DNA damages on the nucleus size of the human cells. The probabilities of different types of single and double-strand breaks increase with the oxygen content.</description><subject>Cell Nucleus - metabolism</subject><subject>Cell Nucleus - radiation effects</subject><subject>Cell Nucleus Size</subject><subject>Computer Simulation</subject><subject>DNA</subject><subject>DNA Breaks, Double-Stranded - radiation effects</subject><subject>DNA Damage</subject><subject>double-strand break</subject><subject>Geant4-DNA</subject><subject>Humans</subject><subject>lineal energy</subject><subject>MCDS</subject><subject>Monte Carlo Method</subject><subject>Oxygen - metabolism</subject><subject>oxygen content</subject><subject>Protons</subject><subject>specific energy</subject><subject>Water</subject><issn>2057-1976</issn><issn>2057-1976</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp1kL1OwzAUhS0EolXpzoQ8MhCwnTg_I6r4k4pYYLYc-6a4Su0SO4gy8Rq8Hk9CQkrFwuQr65xz7_kQOqbknJI8v2CEZxEtsvRC6owX-R4a7772_8wjNPV-SQihKUvTgh-iUVwwzkmcjFG4dzYAnsmmdtjYV_DBLGQwzmJX4fAM2LaqhtZjb94BQ1WBClhajRXU9dfHp8fubbMAi1UfZAPunL1Ny5Vc_BiMMmDVps9bNy4464_QQSVrD9PtO0FP11ePs9to_nBzN7ucR4rRIkSS04KQJElKDYpVcUZYxWPNaZ6yGBTPeFmCKiVw0BXpmiY013EKmlCiM8XiCTodcru9L21XTayM7--WFlzrRUwJy7MsKdJOSgapapz3DVRi3ZiVbDaCEtHjFj1P0fMUA-7OcrJNb8sV6J3hF24nOBsExq3F0rWN7cr-n_cNi9yKrw</recordid><startdate>20240910</startdate><enddate>20240910</enddate><creator>Mokari, Mojtaba</creator><creator>Moeini, Hossein</creator><creator>Eslamifar, Mina</creator><general>IOP Publishing</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0001-6282-1486</orcidid><orcidid>https://orcid.org/0000-0003-3361-7966</orcidid></search><sort><creationdate>20240910</creationdate><title>Monte Carlo investigation of the nucleus size effect and cell’s oxygen content on the damage efficiency of protons</title><author>Mokari, Mojtaba ; Moeini, Hossein ; Eslamifar, Mina</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c219t-a51900444bdec2f3702f53d518623ec575bbecbae5edf0976418d36ed010d7c23</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Cell Nucleus - metabolism</topic><topic>Cell Nucleus - radiation effects</topic><topic>Cell Nucleus Size</topic><topic>Computer Simulation</topic><topic>DNA</topic><topic>DNA Breaks, Double-Stranded - radiation effects</topic><topic>DNA Damage</topic><topic>double-strand break</topic><topic>Geant4-DNA</topic><topic>Humans</topic><topic>lineal energy</topic><topic>MCDS</topic><topic>Monte Carlo Method</topic><topic>Oxygen - metabolism</topic><topic>oxygen content</topic><topic>Protons</topic><topic>specific energy</topic><topic>Water</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Mokari, Mojtaba</creatorcontrib><creatorcontrib>Moeini, Hossein</creatorcontrib><creatorcontrib>Eslamifar, Mina</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Biomedical physics & engineering express</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Mokari, Mojtaba</au><au>Moeini, Hossein</au><au>Eslamifar, Mina</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Monte Carlo investigation of the nucleus size effect and cell’s oxygen content on the damage efficiency of protons</atitle><jtitle>Biomedical physics & engineering express</jtitle><stitle>BPEX</stitle><addtitle>Biomed. Phys. Eng. Express</addtitle><date>2024-09-10</date><risdate>2024</risdate><volume>10</volume><issue>6</issue><spage>65007</spage><pages>65007-</pages><issn>2057-1976</issn><eissn>2057-1976</eissn><abstract>Living tissues could suffer different types of DNA damage as a result of being exposed to ionizing radiations. Monte Carlo simulations of the underlying interactions have been instrumental in predicting the damage types and the processes involved. In this work, we employed Geant4-DNA and MCDS for extracting the initial DNA damage and investigating the dependence of damage efficiency on the cell's oxygen content. The frequency-mean lineal (y¯F) and specific (z¯F) energies were derived for a spherical volume of water of various diameters between 2 and 11.1 μm. This sphere would serve as the nucleus of a cell of 100 μm diameter, engulfed by a homogeneous beam of protons. These microdosimetric quantities were calculated assuming spherical samples of 1 μm diameter in MCDS. The simulation results showed that for 230 MeV protons, an increase in the oxygen content from 0 by 10% raised the frequency of single- and double-strand breaks and lowered the base damage frequency. The resulting damage frequencies appeared to be independent of nucleus diameter. For proton energies between 2 and 230 MeV,y¯Fshowed no dependence on the cell diameter and an increase of the cell size resulted in a decrease inz¯F.An increase in the proton energy slowed down the decreasing rate ofz¯Fas a function of nucleus diameter. However, the ratio ofy¯Fvalues corresponding to two proton energies of choice showed no dependence on the nucleus size and were equal to the ratio of the correspondingz¯Fvalues. Furthermore, the oxygen content of the cell did not affect these microdosimetric quantities. Contrary to damage frequencies, these quantities appeared to depend only on direct interactions due to deposited energies. Our calculations showed the near independence of DNA damages on the nucleus size of the human cells. The probabilities of different types of single and double-strand breaks increase with the oxygen content.</abstract><cop>England</cop><pub>IOP Publishing</pub><pmid>39255034</pmid><doi>10.1088/2057-1976/ad7598</doi><tpages>8</tpages><orcidid>https://orcid.org/0000-0001-6282-1486</orcidid><orcidid>https://orcid.org/0000-0003-3361-7966</orcidid></addata></record> |
fulltext | fulltext |
identifier | ISSN: 2057-1976 |
ispartof | Biomedical physics & engineering express, 2024-09, Vol.10 (6), p.65007 |
issn | 2057-1976 2057-1976 |
language | eng |
recordid | cdi_proquest_miscellaneous_3102877496 |
source | MEDLINE; IOP Publishing Journals; Institute of Physics (IOP) Journals - HEAL-Link |
subjects | Cell Nucleus - metabolism Cell Nucleus - radiation effects Cell Nucleus Size Computer Simulation DNA DNA Breaks, Double-Stranded - radiation effects DNA Damage double-strand break Geant4-DNA Humans lineal energy MCDS Monte Carlo Method Oxygen - metabolism oxygen content Protons specific energy Water |
title | Monte Carlo investigation of the nucleus size effect and cell’s oxygen content on the damage efficiency of protons |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-26T02%3A33%3A06IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Monte%20Carlo%20investigation%20of%20the%20nucleus%20size%20effect%20and%20cell%E2%80%99s%20oxygen%20content%20on%20the%20damage%20efficiency%20of%20protons&rft.jtitle=Biomedical%20physics%20&%20engineering%20express&rft.au=Mokari,%20Mojtaba&rft.date=2024-09-10&rft.volume=10&rft.issue=6&rft.spage=65007&rft.pages=65007-&rft.issn=2057-1976&rft.eissn=2057-1976&rft_id=info:doi/10.1088/2057-1976/ad7598&rft_dat=%3Cproquest_cross%3E3102877496%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=3102877496&rft_id=info:pmid/39255034&rfr_iscdi=true |